RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 GRXCR2A6NFK2 248 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 NRG2O14511 850 aaPredicted RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 CAPN9O14815 690 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ZNF263O14978 683 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ARHGAP6O43182 974 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MBTPS2O43462 519 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MOSPD3O75425 235 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 GRAP2O75791 330 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 LCA5LO95447 670 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 LTFP02788 710 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 GLI1P08151 1106 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 H2AFZP0C0S5 128 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MYBL1P10243 752 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 RALAP11233 206 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 RARGP13631 454 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MAGEA1P43355 309 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 GALCP54803 685 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 RNASE9P60153 205 aaKnown RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 GPC5P78333 572 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 TAF5Q15542 800 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 LEXMQ3ZCV2 418 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 HECTD3Q5T447 861 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 TXNDC8Q6A555 127 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 DNAJC24Q6P3W2 148 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 HFE2Q6ZVN8 426 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 H2AFVQ71UI9 128 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 GET4Q7L5D6 327 aaPredicted RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 C3orf20Q8ND61 904 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ITFG1Q8TB96 612 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 RNF139Q8WU17 664 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ING5Q8WYH8 240 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 SUSD6Q92537 303 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 EDEM1Q92611 657 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ZNF653Q96CK0 615 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MCRS1Q96EZ8 462 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 PIWIL1Q96J94 861 aaKnown RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 TRIM62Q9BVG3 475 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 THAP2Q9H0W7 228 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 POMKQ9H5K3 350 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 SLITRK6Q9H5Y7 841 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 LUC7LQ9NQ29 371 aaKnown RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 PRDM6Q9NQX0 595 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 ASNSD1Q9NWL6 643 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 OSER1Q9NX31 292 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 CLIC5Q9NZA1 410 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 MYO1AQ9UBC5 1043 aa12.15□□□□□ -0.46
YBX3-213ENST00000542641 CNOT8Q9UFF9 292 aaKnown RBP12.15□□□□□ -0.46
YBX3-213ENST00000542641 ANKRD62A6NC57 917 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 HSF2BPO75031 334 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 KRT3P12035 628 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 NCAM1P13591 858 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CEBPBP17676 345 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 DDX6P26196 483 aaKnown RBP eCLIP12.14□□□□□ -0.47
YBX3-213ENST00000542641 SCNN1AP37088 669 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 TUBP50607 506 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 GSCP56915 257 aaPredicted RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 KRT83P78385 493 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CCZ1BP86790 482 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CCZ1P86791 482 aaPredicted RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 TFF2Q03403 129 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 PUS10Q3MIT2 529 aaKnown RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 STXBP5Q5T5C0 1151 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 GPR158Q5T848 1215 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 RSRC2Q7L4I2 434 aaKnown RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 SLC26A9Q7LBE3 791 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 TADA2BQ86TJ2 420 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 MAB21L3Q8N8X9 362 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 CTNNBL1Q8WYA6 563 aaPredicted RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 FGF13Q92913 245 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CYP2S1Q96SQ9 504 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CDK5RAP1Q96SZ6 601 aaKnown RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 SELENOOQ9BVL4 669 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 SLC46A2Q9BY10 475 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 PACSIN1Q9BY11 444 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 NACA2Q9H009 215 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 TASP1Q9H6P5 420 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 CCSER2Q9H7U1 834 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 POPDC2Q9HBU9 364 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 METTL5Q9NRN9 209 aaKnown RBP12.14□□□□□ -0.47
YBX3-213ENST00000542641 PARVAQ9NVD7 372 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 MTPAPQ9NVV4 582 aaKnown RBP eCLIP12.14□□□□□ -0.47
YBX3-213ENST00000542641 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP12.14□□□□□ -0.47
YBX3-213ENST00000542641 PCDHA13Q9Y5I0 950 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 PATJQ8NI35 1801 aa12.14□□□□□ -0.47
YBX3-213ENST00000542641 PRUNE2Q8WUY3 3088 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 TRAV19A0A0A6YYK7 116 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 C2orf78A6NCI8 922 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 SIGLEC16A6NMB1 481 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 SOBPA7XYQ1 873 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 TLR5O60602 858 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 GJB6O95452 261 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 TBX18O95935 607 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 FYNP06241 537 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 HDCP19113 662 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 GBP2P32456 591 aaPredicted RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 ATP5C1P36542 298 aaKnown RBP12.13□□□□□ -0.47
YBX3-213ENST00000542641 MAMLD1Q13495 774 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 DCAF6Q58WW2 860 aa12.13□□□□□ -0.47
YBX3-213ENST00000542641 C10orf120Q5SQS8 335 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms