RNA–Protein interactions for RNA: YMR223W

UBP8, Transcript of Ubiquitin-specific protease component of the SAGA acetylation complex, yeastyeast

Gene UBP8, Length 1,416 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UBP8YMR223W RPS27AP35997 82 aaKnown RBP1.47□□□□□ -2.17
UBP8YMR223W YOR394C-AQ8TGJ0 55 aa1.46□□□□□ -2.18
UBP8YMR223W CUP1-1P0CX80 61 aa1.42□□□□□ -2.18
UBP8YMR223W CUP1-2P0CX81 61 aa1.42□□□□□ -2.18
UBP8YMR223W RPL43AP0CX25 92 aaKnown RBP1.4□□□□□ -2.18
UBP8YMR223W RPL43BP0CX26 92 aa1.4□□□□□ -2.18
UBP8YMR223W FMP27Q06179 2628 aa1.4□□□□□ -2.18
UBP8YMR223W TRA1P38811 3744 aa1.4□□□□□ -2.19
UBP8YMR223W YPR010C-AA5Z2X5 72 aa1.39□□□□□ -2.19
UBP8YMR223W YGR025WP53216 100 aa1.39□□□□□ -2.19
UBP8YMR223W SEN1Q00416 2231 aaKnown RBP1.37□□□□□ -2.19
UBP8YMR223W GCN1P33892 2672 aaKnown RBP1.37□□□□□ -2.19
UBP8YMR223W CSF1Q12150 2958 aa1.37□□□□□ -2.19
UBP8YMR223W YLR157W-EP0CF00 54 aa1.37□□□□□ -2.19
UBP8YMR223W YDR524C-BQ3E6R4 66 aa1.37□□□□□ -2.19
UBP8YMR223W YOL164W-AQ3E7A5 60 aa1.37□□□□□ -2.19
UBP8YMR223W RPL37AP49166 88 aaKnown RBP1.36□□□□□ -2.19
UBP8YMR223W YLR307C-AQ3E825 87 aa1.36□□□□□ -2.19
UBP8YMR223W RPS27BP38711 82 aa1.35□□□□□ -2.19
UBP8YMR223W OLI1P61829 76 aa1.35□□□□□ -2.19
UBP8YMR223W YBR016WP38216 128 aa1.33□□□□□ -2.2
UBP8YMR223W YBR230W-AQ3E762 66 aa1.32□□□□□ -2.2
UBP8YMR223W YFR009W-AP0C5M9 85 aa1.31□□□□□ -2.2
UBP8YMR223W YBL044WP38194 122 aa1.31□□□□□ -2.2
UBP8YMR223W TOS6P48560 102 aa1.31□□□□□ -2.2
UBP8YMR223W YCR108CQ3E819 63 aa1.31□□□□□ -2.2
UBP8YMR223W PRP8P33334 2413 aaKnown RBP1.3□□□□□ -2.2
UBP8YMR223W YBR056W-AI2HB52 66 aa1.3□□□□□ -2.2
UBP8YMR223W UTP20P35194 2493 aaKnown RBP1.29□□□□□ -2.2
UBP8YMR223W MEC1P38111 2368 aa1.28□□□□□ -2.2
UBP8YMR223W DYN1P36022 4092 aa1.26□□□□□ -2.21
UBP8YMR223W SIP18P50263 79 aa1.23□□□□□ -2.21
UBP8YMR223W RPL37BP51402 88 aaKnown RBP1.23□□□□□ -2.21
UBP8YMR223W COA2Q3E823 68 aa1.23□□□□□ -2.21
UBP8YMR223W YGR146C-AQ8TGT9 53 aa1.23□□□□□ -2.21
UBP8YMR223W YIL046W-AQ3E7Z4 54 aa1.2□□□□□ -2.22
UBP8YMR223W YLR342W-AQ3E810 57 aa1.18□□□□□ -2.22
UBP8YMR223W MDN1Q12019 4910 aaKnown RBP1.18□□□□□ -2.22
UBP8YMR223W YJL133C-AQ3E7A3 74 aa1.15□□□□□ -2.22
UBP8YMR223W TOM7P53507 60 aa1.12□□□□□ -2.23
UBP8YMR223W YOR008C-AQ3E7B9 74 aa1.12□□□□□ -2.23
UBP8YMR223W COX9P07255 59 aa1.08□□□□□ -2.24
UBP8YMR223W YLL006W-AQ3E814 58 aa1.07□□□□□ -2.24
UBP8YMR223W RPS29BP41058 56 aaKnown RBP1.06□□□□□ -2.24
UBP8YMR223W DDR2P89113 61 aa1.06□□□□□ -2.24
UBP8YMR223W YOR316C-AQ3E806 69 aa1.02□□□□□ -2.25
UBP8YMR223W Q0297Q9ZZV8 51 aa1.01□□□□□ -2.25
UBP8YMR223W YOR072W-BQ3E832 53 aa0.99□□□□□ -2.25
UBP8YMR223W RPL29P05747 59 aaPredicted RBP0.98□□□□□ -2.25
UBP8YMR223W YGL258W-AQ3E740 77 aa0.98□□□□□ -2.25
UBP8YMR223W YJL127C-BQ3E828 52 aa0.98□□□□□ -2.25
UBP8YMR223W NCE101Q02820 53 aa0.91□□□□□ -2.26
UBP8YMR223W YDR034C-AP0C289 58 aa0.89□□□□□ -2.27
UBP8YMR223W RPL39P04650 51 aa0.88□□□□□ -2.27
UBP8YMR223W YHR073W-AP0C5N7 58 aa0.88□□□□□ -2.27
UBP8YMR223W RPS29AP41057 56 aaKnown RBP0.86□□□□□ -2.27
UBP8YMR223W YMR105W-AQ8TGS8 64 aa0.85□□□□□ -2.27
UBP8YMR223W HOR7Q05827 59 aa0.8□□□□□ -2.28
UBP8YMR223W PMP3P87284 55 aa0.77□□□□□ -2.29
UBP8YMR223W YLL066W-BQ8TGJ7 56 aa0.71□□□□□ -2.3
UBP8YMR223W YHR050W-AQ05451 56 aa0.69□□□□□ -2.3
UBP8YMR223W YML054C-AQ3E809 52 aa0.62□□□□□ -2.31
UBP8YMR223W Q0017Q9ZZX8 53 aa0.62□□□□□ -2.31
Retrieved 63 of 5,963 RNA–protein pairs in 6.6 ms