RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W YCF1P39109 1515 aaKnown RBP-0.57□□□□□ -2.5
UPF3YGR072W TEL1P38110 2787 aa-0.57□□□□□ -2.5
UPF3YGR072W MDN1Q12019 4910 aaKnown RBP-0.58□□□□□ -2.5
UPF3YGR072W YPR117WQ06116 2489 aa-0.59□□□□□ -2.5
UPF3YGR072W TOR2P32600 2474 aaKnown RBP-0.59□□□□□ -2.5
UPF3YGR072W FMP27Q06179 2628 aa-0.59□□□□□ -2.5
UPF3YGR072W YPR010C-AA5Z2X5 72 aa-0.62□□□□□ -2.51
UPF3YGR072W GCN1P33892 2672 aaKnown RBP-0.64□□□□□ -2.51
UPF3YGR072W PDR5P33302 1511 aaKnown RBP-0.64□□□□□ -2.51
UPF3YGR072W YBT1P32386 1661 aa-0.66□□□□□ -2.52
UPF3YGR072W MEC1P38111 2368 aa-0.69□□□□□ -2.52
UPF3YGR072W YOR316C-AQ3E806 69 aa-0.71□□□□□ -2.52
UPF3YGR072W FIG2P25653 1609 aa-0.71□□□□□ -2.52
UPF3YGR072W THO2P53552 1597 aaKnown RBP-0.76□□□□□ -2.53
UPF3YGR072W CDC25P04821 1589 aa-0.78□□□□□ -2.53
UPF3YGR072W SSK2P53599 1579 aa-0.8□□□□□ -2.54
UPF3YGR072W Q0017Q9ZZX8 53 aa-0.81□□□□□ -2.54
UPF3YGR072W SPT6P23615 1451 aaKnown RBP-0.82□□□□□ -2.54
UPF3YGR072W YDR034C-AP0C289 58 aa-0.83□□□□□ -2.54
UPF3YGR072W BUD3P25558 1636 aa-0.83□□□□□ -2.54
UPF3YGR072W NUP188P52593 1655 aaKnown RBP-0.85□□□□□ -2.55
UPF3YGR072W FLO1P32768 1537 aa-0.88□□□□□ -2.55
UPF3YGR072W RPL29P05747 59 aaPredicted RBP-0.89□□□□□ -2.55
UPF3YGR072W YML054C-AQ3E809 52 aa-0.91□□□□□ -2.56
UPF3YGR072W TRA1P38811 3744 aa-0.91□□□□□ -2.56
UPF3YGR072W COX9P07255 59 aa-0.92□□□□□ -2.56
UPF3YGR072W NUP192P47054 1683 aa-0.92□□□□□ -2.56
UPF3YGR072W NUP170P38181 1502 aa-0.93□□□□□ -2.56
UPF3YGR072W CSF1Q12150 2958 aa-0.93□□□□□ -2.56
UPF3YGR072W ATG2P53855 1592 aa-0.93□□□□□ -2.56
UPF3YGR072W STU1P38198 1513 aa-0.94□□□□□ -2.56
UPF3YGR072W NUM1Q00402 2748 aa-0.94□□□□□ -2.56
UPF3YGR072W USO1P25386 1790 aa-0.94□□□□□ -2.56
UPF3YGR072W DDR2P89113 61 aa-0.99□□□□□ -2.57
UPF3YGR072W IRA2P19158 3079 aa-1□□□□□ -2.57
UPF3YGR072W PEP1P32319 1579 aa-1□□□□□ -2.57
UPF3YGR072W IRA1P18963 3092 aa-1.02□□□□□ -2.57
UPF3YGR072W ULS1Q08562 1619 aa-1.02□□□□□ -2.57
UPF3YGR072W MON2P48563 1636 aaPredicted RBP-1.03□□□□□ -2.57
UPF3YGR072W YJL133C-AQ3E7A3 74 aa-1.03□□□□□ -2.57
UPF3YGR072W CUP1-1P0CX80 61 aa-1.04□□□□□ -2.58
UPF3YGR072W CUP1-2P0CX81 61 aa-1.04□□□□□ -2.58
UPF3YGR072W GCN2P15442 1659 aa-1.05□□□□□ -2.58
UPF3YGR072W RKR1Q04781 1562 aa-1.07□□□□□ -2.58
UPF3YGR072W YLR342W-AQ3E810 57 aa-1.09□□□□□ -2.58
UPF3YGR072W HIR3P47171 1648 aa-1.11□□□□□ -2.59
UPF3YGR072W VPS13Q07878 3144 aa-1.12□□□□□ -2.59
UPF3YGR072W YHR073W-AP0C5N7 58 aa-1.15□□□□□ -2.59
UPF3YGR072W YMR105W-AQ8TGS8 64 aa-1.29□□□□□ -2.62
UPF3YGR072W SMX2P40204 77 aaKnown RBP-1.33□□□□□ -2.62
UPF3YGR072W YJL127C-BQ3E828 52 aa-1.34□□□□□ -2.62
UPF3YGR072W TOM1Q03280 3268 aa-1.42□□□□□ -2.64
UPF3YGR072W PMP3P87284 55 aa-1.55□□□□□ -2.66
UPF3YGR072W YLL066W-BQ8TGJ7 56 aa-1.6□□□□□ -2.67
UPF3YGR072W CHC1P22137 1653 aaKnown RBP-1.69□□□□□ -2.68
UPF3YGR072W MLP2P40457 1679 aa-1.71□□□□□ -2.68
UPF3YGR072W HOR7Q05827 59 aa-1.72□□□□□ -2.68
UPF3YGR072W TOM7P53507 60 aa-1.8□□□□□ -2.7
UPF3YGR072W NCE101Q02820 53 aa-2.01□□□□□ -2.73
UPF3YGR072W RPL39P04650 51 aa-2.14□□□□□ -2.75
UPF3YGR072W Q0297Q9ZZV8 51 aa-2.18□□□□□ -2.76
UPF3YGR072W YIL046W-AQ3E7Z4 54 aa-2.32□□□□□ -2.78
UPF3YGR072W YDR034W-BQ6Q5X2 51 aa-2.7□□□□□ -2.84
Retrieved 63 of 5,963 RNA–protein pairs in 8.5 ms