RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C YPR010C-AA5Z2X5 72 aa-0.09□□□□□ -2.42
RTR1YER139C TY1B-DR4Q07793 1604 aa-0.09□□□□□ -2.42
RTR1YER139C SPT6P23615 1451 aaKnown RBP-0.1□□□□□ -2.43
RTR1YER139C SSK2P53599 1579 aa-0.11□□□□□ -2.43
RTR1YER139C YOR093CQ12275 1648 aa-0.11□□□□□ -2.43
RTR1YER139C YOR316C-AQ3E806 69 aa-0.11□□□□□ -2.43
RTR1YER139C MEC1P38111 2368 aa-0.13□□□□□ -2.43
RTR1YER139C CDC25P04821 1589 aa-0.14□□□□□ -2.43
RTR1YER139C YPR117WQ06116 2489 aa-0.14□□□□□ -2.43
RTR1YER139C YBT1P32386 1661 aa-0.14□□□□□ -2.43
RTR1YER139C NUP170P38181 1502 aa-0.15□□□□□ -2.43
RTR1YER139C THO2P53552 1597 aaKnown RBP-0.15□□□□□ -2.43
RTR1YER139C COX9P07255 59 aa-0.16□□□□□ -2.44
RTR1YER139C PEP1P32319 1579 aa-0.17□□□□□ -2.44
RTR1YER139C BUD3P25558 1636 aa-0.17□□□□□ -2.44
RTR1YER139C TEL1P38110 2787 aa-0.17□□□□□ -2.44
RTR1YER139C MON2P48563 1636 aaPredicted RBP-0.18□□□□□ -2.44
RTR1YER139C YDR034C-AP0C289 58 aa-0.19□□□□□ -2.44
RTR1YER139C FIG2P25653 1609 aa-0.2□□□□□ -2.44
RTR1YER139C NUP188P52593 1655 aaKnown RBP-0.2□□□□□ -2.44
RTR1YER139C Q0017Q9ZZX8 53 aa-0.2□□□□□ -2.44
RTR1YER139C ATG2P53855 1592 aa-0.2□□□□□ -2.44
RTR1YER139C FLO1P32768 1537 aa-0.21□□□□□ -2.44
RTR1YER139C STU1P38198 1513 aa-0.21□□□□□ -2.44
RTR1YER139C DDR2P89113 61 aa-0.21□□□□□ -2.44
RTR1YER139C YBR056W-AI2HB52 66 aa-0.22□□□□□ -2.44
RTR1YER139C RPL29P05747 59 aaPredicted RBP-0.22□□□□□ -2.44
RTR1YER139C NUP192P47054 1683 aa-0.22□□□□□ -2.44
RTR1YER139C RKR1Q04781 1562 aa-0.23□□□□□ -2.45
RTR1YER139C ULS1Q08562 1619 aa-0.23□□□□□ -2.45
RTR1YER139C YML054C-AQ3E809 52 aa-0.23□□□□□ -2.45
RTR1YER139C YJL133C-AQ3E7A3 74 aa-0.25□□□□□ -2.45
RTR1YER139C YLR342W-AQ3E810 57 aa-0.25□□□□□ -2.45
RTR1YER139C HIR3P47171 1648 aa-0.25□□□□□ -2.45
RTR1YER139C DYN1P36022 4092 aa-0.25□□□□□ -2.45
RTR1YER139C YHR073W-AP0C5N7 58 aa-0.26□□□□□ -2.45
RTR1YER139C USO1P25386 1790 aa-0.29□□□□□ -2.46
RTR1YER139C GCN1P33892 2672 aaKnown RBP-0.29□□□□□ -2.46
RTR1YER139C GCN2P15442 1659 aa-0.32□□□□□ -2.46
RTR1YER139C SMX2P40204 77 aaKnown RBP-0.32□□□□□ -2.46
RTR1YER139C CUP1-1P0CX80 61 aa-0.33□□□□□ -2.46
RTR1YER139C CUP1-2P0CX81 61 aa-0.33□□□□□ -2.46
RTR1YER139C CSF1Q12150 2958 aa-0.33□□□□□ -2.46
RTR1YER139C NUM1Q00402 2748 aa-0.35□□□□□ -2.47
RTR1YER139C MDN1Q12019 4910 aaKnown RBP-0.36□□□□□ -2.47
RTR1YER139C YJL127C-BQ3E828 52 aa-0.37□□□□□ -2.47
RTR1YER139C IRA1P18963 3092 aa-0.39□□□□□ -2.47
RTR1YER139C YMR105W-AQ8TGS8 64 aa-0.4□□□□□ -2.47
RTR1YER139C TRA1P38811 3744 aa-0.41□□□□□ -2.47
RTR1YER139C PMP3P87284 55 aa-0.43□□□□□ -2.48
RTR1YER139C IRA2P19158 3079 aa-0.44□□□□□ -2.48
RTR1YER139C HOR7Q05827 59 aa-0.46□□□□□ -2.48
RTR1YER139C VPS13Q07878 3144 aa-0.51□□□□□ -2.49
RTR1YER139C CHC1P22137 1653 aaKnown RBP-0.53□□□□□ -2.49
RTR1YER139C TOM7P53507 60 aa-0.54□□□□□ -2.5
RTR1YER139C MLP2P40457 1679 aa-0.56□□□□□ -2.5
RTR1YER139C YLL066W-BQ8TGJ7 56 aa-0.57□□□□□ -2.5
RTR1YER139C NCE101Q02820 53 aa-0.66□□□□□ -2.52
RTR1YER139C TOM1Q03280 3268 aa-0.85□□□□□ -2.55
RTR1YER139C RPL39P04650 51 aa-0.95□□□□□ -2.56
RTR1YER139C YIL046W-AQ3E7Z4 54 aa-1.12□□□□□ -2.59
RTR1YER139C Q0297Q9ZZV8 51 aa-1.16□□□□□ -2.6
RTR1YER139C YDR034W-BQ6Q5X2 51 aa-1.79□□□□□ -2.7
Retrieved 63 of 5,963 RNA–protein pairs in 15.9 ms