RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	KIAA0391	O15091	583 aa	Known RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	HCRT	O43612	131 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	ATP2C2	O75185	946 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	RTN3	O95197	1032 aa	Predicted RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	CER1	O95813	267 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	BMP15	O95972	392 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	TAF10	Q12962	218 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	L1TD1	Q5T7N2	865 aa	Known RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	IL27RA	Q6UWB1	636 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	SFR1	Q86XK3	245 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	SCUBE3	Q8IX30	993 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	CHPF	Q8IZ52	775 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	DEFB119	Q8N690	84 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	PNPLA1	Q8N8W4	532 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	BAHD1	Q8TBE0	780 aa	Predicted RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	IPO4	Q8TEX9	1081 aa	Known RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	HNRNPLL	Q8WVV9	542 aa	Known RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	HPDL	Q96IR7	371 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	LRIG1	Q96JA1	1093 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	ZFR	Q96KR1	1074 aa	Known RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	BBC3	Q96PG8	261 aa	Predicted RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	ACCS	Q96QU6	501 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	UBL7	Q96S82	380 aa	Predicted RBP	13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	CDC6	Q99741	560 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	SH3BP1	Q9Y3L3	701 aa		13.22	□□□□□ -0.29
CAPN1-223	ENST00000533079	PCNX2	A6NKB5	2137 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079		E9PAM4	449 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	TK2	O00142	265 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	GFRA2	O00451	464 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	FLRT2	O43155	660 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	DKK1	O94907	266 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	ABL1	P00519	1130 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	PDIA4	P13667	645 aa	Known RBP	13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	GAP43	P17677	238 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	LMO2	P25791	158 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	ZNF132	P52740	706 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	NUCB2	P80303	420 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	SURF1	Q15526	300 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	SNX30	Q5VWJ9	437 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	MCTP1	Q6DN14	999 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	GRAMD4	Q6IC98	578 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	METTL3	Q86U44	580 aa	Known RBP	13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	CADM4	Q8NFZ8	388 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	DNASE2B	Q8WZ79	361 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	SAAL1	Q96ER3	474 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	MRPL44	Q9H9J2	332 aa	Known RBP	13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	OLFML3	Q9NRN5	406 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	PCDHGB2	Q9Y5G2	931 aa		13.21	□□□□□ -0.29
CAPN1-223	ENST00000533079	MEI4	A8MW99	385 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	SCAMP3	O14828	347 aa	Known RBP	13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	COCH	O43405	550 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	CACNG3	O60359	315 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	TACC1	O75410	805 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	TNNC2	P02585	160 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	FAM163B	P0C2L3	166 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	YWHAQ	P27348	245 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	CD6	P30203	668 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	PI4KA	P42356	2102 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	C19orf57	Q0VDD7	668 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	ANO4	Q32M45	955 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	MDH1B	Q5I0G3	518 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	HECTD3	Q5T447	861 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	EGFLAM	Q63HQ2	1017 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	CLEC17A	Q6ZS10	378 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	NUP93	Q8N1F7	819 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	NAT16	Q8N8M0	369 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	ADAM32	Q8TC27	787 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	SCFD1	Q8WVM8	642 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	MRGPRX1	Q96LB2	322 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	XPO6	Q96QU8	1125 aa	Known RBP	13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	INTS13	Q9NVM9	706 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	STK17A	Q9UEE5	414 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	PCDHB13	Q9Y5F0	798 aa		13.2	□□□□□ -0.3
CAPN1-223	ENST00000533079	PLXNB3	Q9ULL4	1909 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	ATP8B3	O60423	1300 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	NPC1	O15118	1278 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	GCNT3	O95395	438 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	MATK	P42679	507 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	NFKBIB	Q15653	356 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	HS2ST1	Q7LGA3	356 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	SLCO6A1	Q86UG4	719 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	MIB1	Q86YT6	1006 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	WDR49	Q8IV35	697 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	BBS7	Q8IWZ6	715 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	GPD1L	Q8N335	351 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	SPRYD3	Q8NCJ5	442 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	ENGASE	Q8NFI3	743 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	SETD7	Q8WTS6	366 aa	Known RBP	13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	FBXO32	Q969P5	355 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	IKZF4	Q9H2S9	585 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	SNX25	Q9H3E2	840 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	PDE11A	Q9HCR9	933 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	TM7SF3	Q9NS93	570 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	DNAJC17	Q9NVM6	304 aa	Known RBP	13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	TOR4A	Q9NXH8	423 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	MARK1	Q9P0L2	795 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	USP36	Q9P275	1121 aa	Known RBP	13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	HCN2	Q9UL51	889 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	PTPRB	P23467	1997 aa		13.19	□□□□□ -0.3
CAPN1-223	ENST00000533079	CACNA1E	Q15878	2313 aa		13.19	□□□□□ -0.3

Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms