RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 CYP4V2Q6ZWL3 525 aaPredicted RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 STRADAQ7RTN6 431 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 LRRTM3Q86VH5 581 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TEKT4Q8WW24 435 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 TRIM43Q96BQ3 446 aaPredicted RBP18.97■□□□□ 0.63
VIM-201ENST00000224237 ULBP1Q9BZM6 244 aa18.97■□□□□ 0.63
VIM-201ENST00000224237 NLRC5Q86WI3 1866 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 MAP2K7O14733 419 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 CAPN2P17655 700 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 PBX3P40426 434 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 SLC11A1P49279 550 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 RABGGTBP53611 331 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 DAOAP59103 153 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 NNTQ13423 1086 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 HLTFQ14527 1009 aaKnown RBP eCLIP18.96■□□□□ 0.634e-7■□□□□ 8.4
VIM-201ENST00000224237 CASP8Q14790 479 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 TRADDQ15628 312 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 DUPD1Q68J44 220 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 SCYL2Q6P3W7 929 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 NECAB2Q7Z6G3 386 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 SPATA2LQ8IUW3 424 aaPredicted RBP18.96■□□□□ 0.63
VIM-201ENST00000224237 DCP1BQ8IZD4 617 aaKnown RBP18.96■□□□□ 0.63
VIM-201ENST00000224237 KRT222Q8N1A0 295 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 ATG4AQ8WYN0 398 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 CAVIN3Q969G5 261 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 TMEM106CQ9BVX2 250 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 RHOBTB2Q9BYZ6 727 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 POPDC2Q9HBU9 364 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.96■□□□□ 0.63
VIM-201ENST00000224237 MARCH5Q9NX47 278 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 STAP1Q9ULZ2 295 aa18.96■□□□□ 0.63
VIM-201ENST00000224237 R3HDM2Q9Y2K5 976 aaKnown RBP18.96■□□□□ 0.63
VIM-201ENST00000224237 SF3B1O75533 1304 aaKnown RBP eCLIP18.96■□□□□ 0.634e-7■■■■■ 40.1
VIM-201ENST00000224237 MDM4O15151 490 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 DAPK3O43293 454 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 NOS2P35228 1153 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 KCNJ1P48048 391 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 DRG2P55039 364 aaKnown RBP18.95■□□□□ 0.62
VIM-201ENST00000224237 ADCY2Q08462 1091 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 ELAVL2Q12926 359 aaKnown RBP18.95■□□□□ 0.62
VIM-201ENST00000224237 SNX1Q13596 522 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 SLC25A52Q3SY17 297 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 RAB6CQ53S08 254 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 VARS2Q5ST30 1063 aaKnown RBP18.95■□□□□ 0.62
VIM-201ENST00000224237 SYDE1Q6ZW31 735 aaPredicted RBP18.95■□□□□ 0.62
VIM-201ENST00000224237 GPRIN1Q7Z2K8 1008 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 DEFB106AQ8N104 65 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 SLC2A13Q96QE2 648 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 ZCWPW1Q9H0M4 648 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 RAB6CQ9H0N0 254 aa18.95■□□□□ 0.62
VIM-201ENST00000224237 ENDOD1O94919 500 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 CSF2RAP15509 400 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 CDH6P55285 790 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 PDK2Q15119 407 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 FAM171A1Q5VUB5 890 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 DRICH1Q6PGQ1 229 aaPredicted RBP18.94■□□□□ 0.62
VIM-201ENST00000224237 TMCO2Q7Z6W1 182 aaPredicted RBP18.94■□□□□ 0.62
VIM-201ENST00000224237 MAP7D3Q8IWC1 876 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 ATL2Q8NHH9 583 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 NDRG1Q92597 394 aaKnown RBP18.94■□□□□ 0.62
VIM-201ENST00000224237 DPH5Q9H2P9 285 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 VWA8A3KMH1 1905 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 PATJQ8NI35 1801 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 GAS8O95995 478 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 ZBED1O96006 694 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 GALTP07902 379 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 CD48P09326 243 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 TFE3P19532 575 aaPredicted RBP18.94■□□□□ 0.62
VIM-201ENST00000224237 ECHS1P30084 290 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 GBP1P32455 592 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 SULT1E1P49888 294 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 PPP1R7Q15435 360 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 NFE2Q16621 373 aaPredicted RBP18.94■□□□□ 0.62
VIM-201ENST00000224237 SLC39A12Q504Y0 691 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 DCAF6Q58WW2 860 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 ZNF280DQ6N043 979 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 FUT10Q6P4F1 479 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 BBS12Q6ZW61 710 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 SND1Q7KZF4 910 aaKnown RBP eCLIP18.94■□□□□ 0.622e-10■■□□□ 12.8
VIM-201ENST00000224237 VSIG1Q86XK7 387 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 DDX42Q86XP3 938 aaKnown RBP eCLIP18.94■□□□□ 0.62
VIM-201ENST00000224237 SCML4Q8N228 414 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 NT5C3BQ969T7 300 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 CCDC114Q96M63 670 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 CALN1Q9BXU9 219 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 TRIM31Q9BZY9 425 aa18.94■□□□□ 0.62
VIM-201ENST00000224237 NT5C1B-RDH14C9J2C7 533 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 USP17L7P0C7H9 530 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 ARSEP51690 589 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 MRPL58Q14197 206 aaKnown RBP18.93■□□□□ 0.62
VIM-201ENST00000224237 KRT81Q14533 505 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 CEP57Q86XR8 500 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 TTC13Q8NBP0 860 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 IRGQQ8WZA9 623 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 FUBP3Q96I24 572 aaKnown RBP eCLIP18.93■□□□□ 0.62
VIM-201ENST00000224237 GDAP1L1Q96MZ0 367 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 SNRNP25Q9BV90 132 aaKnown RBP18.93■□□□□ 0.62
VIM-201ENST00000224237 FRMD8P1Q9BZ68 369 aaPredicted RBP18.93■□□□□ 0.62
VIM-201ENST00000224237 GPR62Q9BZJ7 368 aa18.93■□□□□ 0.62
VIM-201ENST00000224237 VIPAS39Q9H9C1 493 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms