RNA–Protein interactions for RNA: YML112W

CTK3, Transcript of Gamma subunit of C-terminal domain kinase I, yeast

Gene CTK3, Length 891 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CTK3	YML112W	SUV3	P32580	737 aa		5.26	□□□□□ -1.57
CTK3	YML112W	SCD5	P34758	872 aa		5.26	□□□□□ -1.57
CTK3	YML112W	BOI2	P39969	1040 aa		5.26	□□□□□ -1.57
CTK3	YML112W	YML083C	Q04526	418 aa		5.26	□□□□□ -1.57
CTK3	YML112W	UTP4	Q06679	776 aa	Known RBP	5.26	□□□□□ -1.57
CTK3	YML112W	GPM1	P00950	247 aa	Known RBP	5.25	□□□□□ -1.57
CTK3	YML112W	MTO1	P53070	669 aa		5.25	□□□□□ -1.57
CTK3	YML112W	PUF6	Q04373	656 aa	Known RBP	5.25	□□□□□ -1.57
CTK3	YML112W	PUN1	Q06991	263 aa		5.24	□□□□□ -1.57
CTK3	YML112W	KAP122	P32767	1081 aa		5.23	□□□□□ -1.57
CTK3	YML112W	ALO1	P54783	526 aa	Known RBP	5.23	□□□□□ -1.57
CTK3	YML112W	SUB2	Q07478	446 aa	Known RBP	5.23	□□□□□ -1.57
CTK3	YML112W	RPP1A	P05318	106 aa	Predicted RBP	5.22	□□□□□ -1.57
CTK3	YML112W	YBR197C	P38306	217 aa		5.22	□□□□□ -1.57
CTK3	YML112W	IRC24	P40580	263 aa		5.22	□□□□□ -1.57
CTK3	YML112W	CAB1	Q04430	367 aa		5.22	□□□□□ -1.57
CTK3	YML112W	ALD4	P46367	519 aa	Known RBP	5.21	□□□□□ -1.58
CTK3	YML112W	CWC15	Q03772	175 aa	Known RBP	5.21	□□□□□ -1.58
CTK3	YML112W	TY1A-DR2	Q03964	440 aa	Known RBP	5.21	□□□□□ -1.58
CTK3	YML112W	SRS2	P12954	1174 aa		5.2	□□□□□ -1.58
CTK3	YML112W	QDR2	P40474	542 aa		5.2	□□□□□ -1.58
CTK3	YML112W	PRY1	P47032	299 aa		5.2	□□□□□ -1.58
CTK3	YML112W	SKP1	P52286	194 aa		5.2	□□□□□ -1.58
CTK3	YML112W	FOX2	Q02207	900 aa	Known RBP	5.2	□□□□□ -1.58
CTK3	YML112W	YPL034W	Q03083	165 aa		5.2	□□□□□ -1.58
CTK3	YML112W	MRPL33	P20084	86 aa		5.19	□□□□□ -1.58
CTK3	YML112W	VMA3	P25515	160 aa		5.19	□□□□□ -1.58
CTK3	YML112W	TAT1	P38085	619 aa		5.19	□□□□□ -1.58
CTK3	YML112W	MSC7	P38694	644 aa		5.19	□□□□□ -1.58
CTK3	YML112W	CUS1	Q02554	436 aa	Predicted RBP	5.19	□□□□□ -1.58
CTK3	YML112W	RPC31	P17890	251 aa		5.18	□□□□□ -1.58
CTK3	YML112W	NCL1	P38205	684 aa	Known RBP	5.18	□□□□□ -1.58
CTK3	YML112W	HEH2	Q03281	663 aa		5.18	□□□□□ -1.58
CTK3	YML112W	ISC10	P32645	267 aa		5.17	□□□□□ -1.58
CTK3	YML112W	APM2	P38700	605 aa		5.17	□□□□□ -1.58
CTK3	YML112W	YNR040W	P53736	256 aa		5.17	□□□□□ -1.58
CTK3	YML112W	PNP1	Q05788	311 aa		5.17	□□□□□ -1.58
CTK3	YML112W	PDC5	P16467	563 aa	Known RBP	5.16	□□□□□ -1.58
CTK3	YML112W	KNS1	P32350	737 aa	Predicted RBP	5.16	□□□□□ -1.58
CTK3	YML112W	LDH1	P38139	375 aa		5.16	□□□□□ -1.58
CTK3	YML112W	DYS1	P38791	387 aa		5.16	□□□□□ -1.58
CTK3	YML112W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	5.15	□□□□□ -1.59	not detected
CTK3	YML112W	INP52	P50942	1183 aa		5.15	□□□□□ -1.59
CTK3	YML112W	RRN6	P32786	894 aa		5.14	□□□□□ -1.59
CTK3	YML112W	TPS3	P38426	1054 aa	Known RBP	5.14	□□□□□ -1.59
CTK3	YML112W	MET1	P36150	593 aa		5.13	□□□□□ -1.59
CTK3	YML112W	OMA1	P36163	345 aa		5.13	□□□□□ -1.59
CTK3	YML112W	PRK1	P40494	810 aa		5.13	□□□□□ -1.59
CTK3	YML112W	YOR296W	Q08748	1289 aa		5.13	□□□□□ -1.59
CTK3	YML112W	GIP1	P38229	639 aa		5.12	□□□□□ -1.59
CTK3	YML112W	ITC1	P53125	1264 aa		5.12	□□□□□ -1.59
CTK3	YML112W	RPL34A	P87262	121 aa	Predicted RBP	5.12	□□□□□ -1.59
CTK3	YML112W	BSD2	P38356	321 aa		5.11	□□□□□ -1.59
CTK3	YML112W	FUR4	P05316	633 aa	Known RBP	5.1	□□□□□ -1.59
CTK3	YML112W	MSN1	P22148	382 aa		5.1	□□□□□ -1.59
CTK3	YML112W	ISW1	P38144	1129 aa		5.1	□□□□□ -1.59
CTK3	YML112W	LSO1	Q3E827	93 aa		5.1	□□□□□ -1.59
CTK3	YML112W	BOI1	P38041	980 aa	Known RBP	5.09	□□□□□ -1.59
CTK3	YML112W	FIR1	P40020	876 aa		5.09	□□□□□ -1.59
CTK3	YML112W	HXT8	P40886	569 aa		5.09	□□□□□ -1.59
CTK3	YML112W	SSA1	P10591	642 aa	Known RBP	5.08	□□□□□ -1.6
CTK3	YML112W	IDI1	P15496	288 aa		5.08	□□□□□ -1.6
CTK3	YML112W	PGM2	P37012	569 aa	Known RBP	5.08	□□□□□ -1.6
CTK3	YML112W	YBR287W	P38355	427 aa		5.08	□□□□□ -1.6
CTK3	YML112W	YER156C	P40093	338 aa	Known RBP	5.08	□□□□□ -1.6
CTK3	YML112W	SUT1	P53032	299 aa	Known RBP	5.08	□□□□□ -1.6
CTK3	YML112W	APC11	Q12157	165 aa		5.08	□□□□□ -1.6
CTK3	YML112W	MRP10	O75012	95 aa		5.07	□□□□□ -1.6
CTK3	YML112W	ALG14	P38242	237 aa		5.07	□□□□□ -1.6
CTK3	YML112W	BOL3	P39724	118 aa		5.07	□□□□□ -1.6
CTK3	YML112W	YIL165C	P40446	119 aa		5.07	□□□□□ -1.6
CTK3	YML112W	AVT1	P47082	602 aa		5.07	□□□□□ -1.6
CTK3	YML112W	NHA1	Q99271	985 aa		5.07	□□□□□ -1.6
CTK3	YML112W	NAR1	P23503	491 aa	Known RBP	5.06	□□□□□ -1.6
CTK3	YML112W	KTR2	P33550	425 aa		5.05	□□□□□ -1.6
CTK3	YML112W	RGD2	P43556	714 aa		5.05	□□□□□ -1.6
CTK3	YML112W	GIS4	Q04233	774 aa		5.05	□□□□□ -1.6
CTK3	YML112W	KAR5	Q04746	504 aa		5.05	□□□□□ -1.6
CTK3	YML112W	EMG1	Q06287	252 aa	Known RBP	5.05	□□□□□ -1.6
CTK3	YML112W	RSC2	Q06488	889 aa		5.05	□□□□□ -1.6
CTK3	YML112W	AIM46	P38885	310 aa		5.04	□□□□□ -1.6
CTK3	YML112W	RPB10	P22139	70 aa		5.03	□□□□□ -1.6
CTK3	YML112W	SMC1	P32908	1225 aa		5.03	□□□□□ -1.6
CTK3	YML112W	NTA1	P40354	457 aa		5.03	□□□□□ -1.6
CTK3	YML112W	YJL181W	P46987	611 aa		5.03	□□□□□ -1.6
CTK3	YML112W	GLO3	P38682	493 aa	Known RBP	5.02	□□□□□ -1.61
CTK3	YML112W	RAD55	P38953	406 aa		5.02	□□□□□ -1.61
CTK3	YML112W	PPT1	P53043	513 aa		5.02	□□□□□ -1.61
CTK3	YML112W	CDC3	P32457	520 aa	Known RBP	5.01	□□□□□ -1.61
CTK3	YML112W	GEF1	P37020	779 aa		5.01	□□□□□ -1.61
CTK3	YML112W	QDR1	P40475	563 aa		5.01	□□□□□ -1.61
CTK3	YML112W	BUD9	P53226	547 aa		5.01	□□□□□ -1.61
CTK3	YML112W	IRS4	P36115	615 aa	Known RBP	5	□□□□□ -1.61
CTK3	YML112W	PSY2	P40164	858 aa		5	□□□□□ -1.61
CTK3	YML112W	INP51	P40559	946 aa	Known RBP	5	□□□□□ -1.61
CTK3	YML112W	SOK2	P53438	785 aa	Predicted RBP	5	□□□□□ -1.61
CTK3	YML112W	SLP1	Q12232	587 aa		5	□□□□□ -1.61
CTK3	YML112W	TIF6	Q12522	245 aa	Known RBP	5	□□□□□ -1.61
CTK3	YML112W	TY4B-P	A0A0B7P3V8	1104 aa		4.99	□□□□□ -1.61
CTK3	YML112W	RRM3	P38766	723 aa		4.99	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms