RNA–Protein interactions for RNA: YHR012W

VPS29, Transcript of Subunit of the membrane-associated retromer complex, yeastyeast

Gene VPS29, Length 849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS29YHR012W LYS2P07702 1392 aa6.19□□□□□ -1.42
VPS29YHR012W CAF20P12962 161 aaKnown RBP6.19□□□□□ -1.42
VPS29YHR012W ARG8P18544 423 aa6.19□□□□□ -1.42
VPS29YHR012W COQ8P27697 501 aa6.19□□□□□ -1.42
VPS29YHR012W RTR1P40084 226 aaPredicted RBP6.19□□□□□ -1.42
VPS29YHR012W DUS1P53759 423 aaKnown RBP6.19□□□□□ -1.42
VPS29YHR012W RAS1P01119 309 aa6.18□□□□□ -1.42
VPS29YHR012W NMA111P53920 997 aa6.18□□□□□ -1.42
VPS29YHR012W TIM50Q02776 476 aa6.18□□□□□ -1.42
VPS29YHR012W UBP16Q02863 499 aa6.18□□□□□ -1.42
VPS29YHR012W VPS64Q03944 604 aa6.18□□□□□ -1.42
VPS29YHR012W CRF1Q04930 467 aa6.18□□□□□ -1.42
VPS29YHR012W YPR204WQ08995 1032 aa6.18□□□□□ -1.42
VPS29YHR012W AIM7Q12156 149 aa6.18□□□□□ -1.42
VPS29YHR012W PRD1P25375 712 aa6.17□□□□□ -1.42
VPS29YHR012W APL2P36000 726 aaPredicted RBP6.17□□□□□ -1.42
VPS29YHR012W ILV3P39522 585 aaKnown RBP6.17□□□□□ -1.42
VPS29YHR012W PEA2P40091 420 aa6.17□□□□□ -1.42
VPS29YHR012W PKH1Q03407 766 aa6.17□□□□□ -1.42
VPS29YHR012W TYW1Q08960 810 aaKnown RBP6.17□□□□□ -1.42
VPS29YHR012W BMS1Q08965 1183 aaKnown RBP6.17□□□□□ -1.42
VPS29YHR012W RAM2P29703 316 aa6.16□□□□□ -1.42
VPS29YHR012W FET4P40988 552 aa6.16□□□□□ -1.42
VPS29YHR012W RRP46P53256 223 aaPredicted RBP6.16□□□□□ -1.42
VPS29YHR012W DNM1P54861 757 aa6.16□□□□□ -1.42
VPS29YHR012W CWC15Q03772 175 aaKnown RBP6.16□□□□□ -1.42
VPS29YHR012W UBX2Q04228 584 aa6.16□□□□□ -1.42
VPS29YHR012W ETP1P38748 585 aaKnown RBP6.15□□□□□ -1.42
VPS29YHR012W YIL089WP40500 205 aa6.15□□□□□ -1.42
VPS29YHR012W GYP7P48365 746 aa6.15□□□□□ -1.42
VPS29YHR012W YOL057WQ08225 711 aa6.15□□□□□ -1.42
VPS29YHR012W POM152P39685 1337 aa6.15□□□□□ -1.43
VPS29YHR012W PMD1P32634 1753 aa6.15□□□□□ -1.43
VPS29YHR012W COQ4O13525 335 aa6.14□□□□□ -1.43
VPS29YHR012W EMP47P43555 445 aa6.14□□□□□ -1.43
VPS29YHR012W YGR117CP53270 476 aa6.14□□□□□ -1.43
VPS29YHR012W YGR273CP53329 174 aa6.14□□□□□ -1.43
VPS29YHR012W DPH6Q12429 685 aa6.14□□□□□ -1.43
VPS29YHR012W SRF1Q12516 437 aa6.14□□□□□ -1.43
VPS29YHR012W TIF6Q12522 245 aaKnown RBP6.14□□□□□ -1.43
VPS29YHR012W SUP35P05453 685 aaKnown RBP6.13□□□□□ -1.43
VPS29YHR012W BSD2P38356 321 aa6.13□□□□□ -1.43
VPS29YHR012W TRM44Q02648 567 aaKnown RBP6.13□□□□□ -1.43
VPS29YHR012W RRG1Q12167 365 aaPredicted RBP6.13□□□□□ -1.43
VPS29YHR012W TOM1Q03280 3268 aa6.13□□□□□ -1.43
VPS29YHR012W AMS1P22855 1083 aa6.12□□□□□ -1.43
VPS29YHR012W KRE2P27809 442 aa6.12□□□□□ -1.43
VPS29YHR012W CST6P40535 587 aa6.12□□□□□ -1.43
VPS29YHR012W ZDS2P54786 942 aa6.12□□□□□ -1.43
VPS29YHR012W YBR287WP38355 427 aa6.11□□□□□ -1.43
VPS29YHR012W RRT6P53117 311 aaPredicted RBP6.11□□□□□ -1.43
VPS29YHR012W SEN54Q02825 467 aaPredicted RBP6.11□□□□□ -1.43
VPS29YHR012W HPR1P17629 752 aaKnown RBP6.1□□□□□ -1.43
VPS29YHR012W GAP1P19145 602 aaPredicted RBP6.1□□□□□ -1.43
VPS29YHR012W AFG2P32794 780 aa6.1□□□□□ -1.43
VPS29YHR012W RSC30P38781 883 aa6.1□□□□□ -1.43
VPS29YHR012W ICP55P40051 511 aa6.1□□□□□ -1.43
VPS29YHR012W YJR008WP47085 338 aa6.1□□□□□ -1.43
VPS29YHR012W GYP1Q08484 637 aa6.1□□□□□ -1.43
VPS29YHR012W HKR1P41809 1802 aa6.09□□□□□ -1.43
VPS29YHR012W PSF3Q12146 194 aa6.09□□□□□ -1.43
VPS29YHR012W HVG1P0CE11 249 aa6.08□□□□□ -1.44
VPS29YHR012W NUG1P40010 520 aaKnown RBP6.08□□□□□ -1.44
VPS29YHR012W VPS4P52917 437 aa6.08□□□□□ -1.44
VPS29YHR012W PRP42Q03776 544 aaKnown RBP6.08□□□□□ -1.44
VPS29YHR012W THI22Q06490 572 aa6.08□□□□□ -1.44
VPS29YHR012W YPR015CQ12531 247 aa6.08□□□□□ -1.44
VPS29YHR012W SAC3P46674 1301 aa6.07□□□□□ -1.44
VPS29YHR012W SDH2P21801 266 aa6.07□□□□□ -1.44
VPS29YHR012W NCS6P53088 359 aa6.07□□□□□ -1.44
VPS29YHR012W ITC1P53125 1264 aa6.07□□□□□ -1.44
VPS29YHR012W NOP8Q08287 484 aaPredicted RBP6.07□□□□□ -1.44
VPS29YHR012W ISU2Q12056 156 aa6.07□□□□□ -1.44
VPS29YHR012W MRP7P12687 371 aa6.06□□□□□ -1.44
VPS29YHR012W GAL2P13181 574 aa6.06□□□□□ -1.44
VPS29YHR012W MGM1P32266 881 aa6.06□□□□□ -1.44
VPS29YHR012W NUP133P36161 1157 aa6.06□□□□□ -1.44
VPS29YHR012W PCS60P38137 543 aaKnown RBP RIP-Chip data6.06□□□□□ -1.44 RIP-Chip
VPS29YHR012W SET1P38827 1080 aaKnown RBP6.06□□□□□ -1.44
VPS29YHR012W MPP10P47083 593 aaKnown RBP6.06□□□□□ -1.44
VPS29YHR012W RPT4P53549 437 aaKnown RBP6.06□□□□□ -1.44
VPS29YHR012W YPL062WQ02781 134 aa6.06□□□□□ -1.44
VPS29YHR012W SRT1Q03175 343 aa6.06□□□□□ -1.44
VPS29YHR012W FCP1Q03254 732 aa6.06□□□□□ -1.44
VPS29YHR012W MTC5Q03897 1148 aa6.06□□□□□ -1.44
VPS29YHR012W YDR306CQ06640 478 aa6.06□□□□□ -1.44
VPS29YHR012W ACK1Q07622 623 aaPredicted RBP6.06□□□□□ -1.44
VPS29YHR012W RTT109Q07794 436 aa6.06□□□□□ -1.44
VPS29YHR012W PSH1Q12161 406 aa6.06□□□□□ -1.44
VPS29YHR012W SWI1P09547 1314 aa6.05□□□□□ -1.44
VPS29YHR012W CBP1P07252 654 aa6.05□□□□□ -1.44
VPS29YHR012W RAM1P22007 431 aa6.05□□□□□ -1.44
VPS29YHR012W NGR1P32831 672 aaKnown RBP6.05□□□□□ -1.44
VPS29YHR012W GAS5Q08193 484 aa6.05□□□□□ -1.44
VPS29YHR012W SNU66Q12420 587 aaPredicted RBP6.05□□□□□ -1.44
VPS29YHR012W CSR2Q12734 1121 aa6.05□□□□□ -1.44
VPS29YHR012W FIG2P25653 1609 aa6.04□□□□□ -1.44
VPS29YHR012W TPD3P31383 635 aa6.04□□□□□ -1.44
VPS29YHR012W GSM1P42950 618 aa6.04□□□□□ -1.44
VPS29YHR012W JJJ2P46997 583 aa6.04□□□□□ -1.44
Retrieved 100 of 5,963 RNA–protein pairs in 18.5 ms