RNA–Protein interactions for RNA: YDR494W

RSM28, Transcript of Mitochondrial ribosomal protein of the small subunit, yeast

Gene RSM28, Length 1,086 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RSM28	YDR494W	SUV3	P32580	737 aa		6.37	□□□□□ -1.39
RSM28	YDR494W	NCL1	P38205	684 aa	Known RBP	6.37	□□□□□ -1.39
RSM28	YDR494W	CWH41	P53008	833 aa		6.37	□□□□□ -1.39
RSM28	YDR494W	RPC31	P17890	251 aa		6.36	□□□□□ -1.39
RSM28	YDR494W	UBX7	P38349	436 aa		6.36	□□□□□ -1.39
RSM28	YDR494W	CAB1	Q04430	367 aa		6.36	□□□□□ -1.39
RSM28	YDR494W	YDR215C	Q12240	137 aa		6.36	□□□□□ -1.39
RSM28	YDR494W	PUP1	P25043	261 aa		6.35	□□□□□ -1.39
RSM28	YDR494W	PRK1	P40494	810 aa		6.35	□□□□□ -1.39
RSM28	YDR494W	APM2	P38700	605 aa		6.34	□□□□□ -1.39
RSM28	YDR494W	QDR2	P40474	542 aa		6.34	□□□□□ -1.39
RSM28	YDR494W	SLN1	P39928	1220 aa	Predicted RBP	6.33	□□□□□ -1.4
RSM28	YDR494W	YNR040W	P53736	256 aa		6.33	□□□□□ -1.4
RSM28	YDR494W	MRPL33	P20084	86 aa		6.31	□□□□□ -1.4
RSM28	YDR494W	PGM2	P37012	569 aa	Known RBP	6.31	□□□□□ -1.4
RSM28	YDR494W	VMA3	P25515	160 aa		6.3	□□□□□ -1.4
RSM28	YDR494W	ALG14	P38242	237 aa		6.3	□□□□□ -1.4
RSM28	YDR494W	YBR197C	P38306	217 aa		6.3	□□□□□ -1.4
RSM28	YDR494W	FOX2	Q02207	900 aa	Known RBP	6.3	□□□□□ -1.4
RSM28	YDR494W	NHA1	Q99271	985 aa		6.3	□□□□□ -1.4
RSM28	YDR494W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	6.29	□□□□□ -1.4	RIP-Chip
RSM28	YDR494W	PRY1	P47032	299 aa		6.29	□□□□□ -1.4
RSM28	YDR494W	NAR1	P23503	491 aa	Known RBP	6.28	□□□□□ -1.4
RSM28	YDR494W	TAT1	P38085	619 aa		6.28	□□□□□ -1.4
RSM28	YDR494W	TPS3	P38426	1054 aa	Known RBP	6.28	□□□□□ -1.4
RSM28	YDR494W	ALD4	P46367	519 aa	Known RBP	6.28	□□□□□ -1.4
RSM28	YDR494W	ITC1	P53125	1264 aa		6.28	□□□□□ -1.4
RSM28	YDR494W	PUF6	Q04373	656 aa	Known RBP	6.28	□□□□□ -1.4
RSM28	YDR494W	MCA1	Q08601	432 aa		6.28	□□□□□ -1.4
RSM28	YDR494W	AMN1	P38285	549 aa	Predicted RBP	6.27	□□□□□ -1.41
RSM28	YDR494W	DYS1	P38791	387 aa		6.27	□□□□□ -1.41
RSM28	YDR494W	GIS4	Q04233	774 aa		6.27	□□□□□ -1.41
RSM28	YDR494W	YOR296W	Q08748	1289 aa		6.27	□□□□□ -1.41
RSM28	YDR494W	SBP1	P10080	294 aa	Known RBP	6.26	□□□□□ -1.41
RSM28	YDR494W	IDI1	P15496	288 aa		6.26	□□□□□ -1.41
RSM28	YDR494W	YML083C	Q04526	418 aa		6.26	□□□□□ -1.41
RSM28	YDR494W	PUN1	Q06991	263 aa		6.26	□□□□□ -1.41
RSM28	YDR494W	MRP10	O75012	95 aa		6.25	□□□□□ -1.41
RSM28	YDR494W	SSA4	P22202	642 aa	Known RBP	6.25	□□□□□ -1.41
RSM28	YDR494W	ISC10	P32645	267 aa		6.25	□□□□□ -1.41
RSM28	YDR494W	LDH1	P38139	375 aa		6.25	□□□□□ -1.41
RSM28	YDR494W	YER156C	P40093	338 aa	Known RBP	6.25	□□□□□ -1.41
RSM28	YDR494W	LSB6	P42951	607 aa		6.25	□□□□□ -1.41
RSM28	YDR494W	NOB1	Q08444	459 aa	Known RBP	6.25	□□□□□ -1.41
RSM28	YDR494W	GIP1	P38229	639 aa		6.24	□□□□□ -1.41
RSM28	YDR494W	BSD2	P38356	321 aa		6.24	□□□□□ -1.41
RSM28	YDR494W	BUD9	P53226	547 aa		6.24	□□□□□ -1.41
RSM28	YDR494W	SRS2	P12954	1174 aa		6.23	□□□□□ -1.41
RSM28	YDR494W	CWC15	Q03772	175 aa	Known RBP	6.23	□□□□□ -1.41
RSM28	YDR494W	ISW1	P38144	1129 aa		6.21	□□□□□ -1.42
RSM28	YDR494W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	6.21	□□□□□ -1.42	not detected
RSM28	YDR494W	YPL034W	Q03083	165 aa		6.21	□□□□□ -1.42
RSM28	YDR494W	MSN1	P22148	382 aa		6.2	□□□□□ -1.42
RSM28	YDR494W	RRM3	P38766	723 aa		6.19	□□□□□ -1.42
RSM28	YDR494W	AI3	P03877	415 aa		6.18	□□□□□ -1.42
RSM28	YDR494W	YIL165C	P40446	119 aa		6.18	□□□□□ -1.42
RSM28	YDR494W	PNP1	Q05788	311 aa		6.18	□□□□□ -1.42
RSM28	YDR494W	GAS5	Q08193	484 aa		6.18	□□□□□ -1.42
RSM28	YDR494W	SLP1	Q12232	587 aa		6.18	□□□□□ -1.42
RSM28	YDR494W	RSC2	Q06488	889 aa		6.17	□□□□□ -1.42
RSM28	YDR494W	SAC7	P17121	654 aa		6.16	□□□□□ -1.42
RSM28	YDR494W	PPT1	P53043	513 aa		6.16	□□□□□ -1.42
RSM28	YDR494W	GLT1	Q12680	2145 aa	Known RBP	6.16	□□□□□ -1.42
RSM28	YDR494W	HXT8	P40886	569 aa		6.15	□□□□□ -1.42
RSM28	YDR494W	EMG1	Q06287	252 aa	Known RBP	6.15	□□□□□ -1.42
RSM28	YDR494W	TY4B-P	A0A0B7P3V8	1104 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	SFA1	P32771	386 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	BOI1	P38041	980 aa	Known RBP	6.14	□□□□□ -1.43
RSM28	YDR494W	FIR1	P40020	876 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	GIP2	P40036	548 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	TED1	P40533	473 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	YJL181W	P46987	611 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	SOK2	P53438	785 aa	Predicted RBP	6.14	□□□□□ -1.43
RSM28	YDR494W	APC11	Q12157	165 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	TY4A-H	Q6Q5P6	413 aa		6.14	□□□□□ -1.43
RSM28	YDR494W	RRN6	P32786	894 aa		6.13	□□□□□ -1.43
RSM28	YDR494W	KTR2	P33550	425 aa		6.13	□□□□□ -1.43
RSM28	YDR494W	YBR287W	P38355	427 aa		6.13	□□□□□ -1.43
RSM28	YDR494W	ARI1	P53111	347 aa	Known RBP	6.13	□□□□□ -1.43
RSM28	YDR494W	PGM1	P33401	570 aa	Known RBP	6.12	□□□□□ -1.43
RSM28	YDR494W	SUB2	Q07478	446 aa	Known RBP	6.12	□□□□□ -1.43
RSM28	YDR494W	AIM46	P38885	310 aa		6.11	□□□□□ -1.43
RSM28	YDR494W	INP51	P40559	946 aa	Known RBP	6.11	□□□□□ -1.43
RSM28	YDR494W	RGD2	P43556	714 aa		6.11	□□□□□ -1.43
RSM28	YDR494W	SUT1	P53032	299 aa	Known RBP	6.11	□□□□□ -1.43
RSM28	YDR494W	LSO1	Q3E827	93 aa		6.11	□□□□□ -1.43
RSM28	YDR494W	NTA1	P40354	457 aa		6.1	□□□□□ -1.43
RSM28	YDR494W	TAF7	Q05021	590 aa		6.1	□□□□□ -1.43
RSM28	YDR494W	RLF2	Q12495	606 aa		6.1	□□□□□ -1.43
RSM28	YDR494W	RPB10	P22139	70 aa		6.09	□□□□□ -1.43
RSM28	YDR494W	BIO5	P53744	561 aa	Known RBP	6.09	□□□□□ -1.43
RSM28	YDR494W	ALO1	P54783	526 aa	Known RBP	6.09	□□□□□ -1.43
RSM28	YDR494W	TY1A-NL1	Q12391	440 aa	Known RBP	6.09	□□□□□ -1.43
RSM28	YDR494W	RSC6	P25632	483 aa		6.08	□□□□□ -1.44
RSM28	YDR494W	SOG2	Q08817	791 aa		6.08	□□□□□ -1.44
RSM28	YDR494W	FUR4	P05316	633 aa	Known RBP	6.07	□□□□□ -1.44
RSM28	YDR494W	TFA2	P36145	328 aa		6.07	□□□□□ -1.44
RSM28	YDR494W	BOL3	P39724	118 aa		6.07	□□□□□ -1.44
RSM28	YDR494W	GUP1	P53154	560 aa		6.07	□□□□□ -1.44
RSM28	YDR494W	DSE4	P53753	1117 aa		6.07	□□□□□ -1.44

Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms