RNA–Protein interactions for RNA: YDR425W

SNX41, Transcript of Sorting nexin, yeast

Gene SNX41, Length 1,878 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNX41	YDR425W	CUS1	Q02554	436 aa	Predicted RBP	4.2	□□□□□ -1.74
SNX41	YDR425W	HEH2	Q03281	663 aa		4.2	□□□□□ -1.74
SNX41	YDR425W	TY1A-DR2	Q03964	440 aa	Known RBP	4.2	□□□□□ -1.74
SNX41	YDR425W	LSO1	Q3E827	93 aa		4.2	□□□□□ -1.74
SNX41	YDR425W	GPM1	P00950	247 aa	Known RBP	4.19	□□□□□ -1.74
SNX41	YDR425W	DYS1	P38791	387 aa		4.19	□□□□□ -1.74
SNX41	YDR425W	KNS1	P32350	737 aa	Predicted RBP	4.18	□□□□□ -1.74
SNX41	YDR425W	RRN6	P32786	894 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	KTR2	P33550	425 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	GEF1	P37020	779 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	BOI1	P38041	980 aa	Known RBP	4.18	□□□□□ -1.74
SNX41	YDR425W	APM2	P38700	605 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	BOL3	P39724	118 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	RPL34A	P87262	121 aa	Predicted RBP	4.18	□□□□□ -1.74
SNX41	YDR425W	MTC5	Q03897	1148 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	YOR296W	Q08748	1289 aa		4.18	□□□□□ -1.74
SNX41	YDR425W	LDH1	P38139	375 aa		4.17	□□□□□ -1.74
SNX41	YDR425W	NCL1	P38205	684 aa	Known RBP	4.17	□□□□□ -1.74
SNX41	YDR425W	AI1	P03875	834 aa		4.16	□□□□□ -1.74
SNX41	YDR425W	PDC5	P16467	563 aa	Known RBP	4.16	□□□□□ -1.74
SNX41	YDR425W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.16	□□□□□ -1.74	not detected
SNX41	YDR425W	YER156C	P40093	338 aa	Known RBP	4.16	□□□□□ -1.74
SNX41	YDR425W	YFL066C	P43538	392 aa		4.16	□□□□□ -1.74
SNX41	YDR425W	ITC1	P53125	1264 aa		4.16	□□□□□ -1.74
SNX41	YDR425W	YNR040W	P53736	256 aa		4.16	□□□□□ -1.74
SNX41	YDR425W	FUR4	P05316	633 aa	Known RBP	4.15	□□□□□ -1.74
SNX41	YDR425W	MSN1	P22148	382 aa		4.15	□□□□□ -1.74
SNX41	YDR425W	GIP1	P38229	639 aa		4.15	□□□□□ -1.74
SNX41	YDR425W	ISW1	P38144	1129 aa		4.15	□□□□□ -1.75
SNX41	YDR425W	PRK1	P40494	810 aa		4.15	□□□□□ -1.75
SNX41	YDR425W	HXT8	P40886	569 aa		4.15	□□□□□ -1.75
SNX41	YDR425W	CDC3	P32457	520 aa	Known RBP	4.14	□□□□□ -1.75
SNX41	YDR425W	BSD2	P38356	321 aa		4.14	□□□□□ -1.75
SNX41	YDR425W	IDI1	P15496	288 aa		4.13	□□□□□ -1.75
SNX41	YDR425W	ICP55	P40051	511 aa		4.13	□□□□□ -1.75
SNX41	YDR425W	PHM7	Q12252	991 aa		4.13	□□□□□ -1.75
SNX41	YDR425W	ATG1	P53104	897 aa		4.13	□□□□□ -1.75
SNX41	YDR425W	RPB10	P22139	70 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	MDJ1	P35191	511 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	NTA1	P40354	457 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	YIL165C	P40446	119 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	RGD2	P43556	714 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	KAR5	Q04746	504 aa		4.12	□□□□□ -1.75
SNX41	YDR425W	TRL1	P09880	827 aa	Known RBP	4.11	□□□□□ -1.75
SNX41	YDR425W	YBR287W	P38355	427 aa		4.11	□□□□□ -1.75
SNX41	YDR425W	EMG1	Q06287	252 aa	Known RBP	4.11	□□□□□ -1.75
SNX41	YDR425W	SMC1	P32908	1225 aa		4.11	□□□□□ -1.75
SNX41	YDR425W	MCX1	P38323	520 aa	Predicted RBP	4.11	□□□□□ -1.75
SNX41	YDR425W	SBE2	P42223	864 aa	Known RBP	4.11	□□□□□ -1.75
SNX41	YDR425W	ACF4	P47129	309 aa		4.11	□□□□□ -1.75
SNX41	YDR425W	NSG2	P53898	299 aa		4.11	□□□□□ -1.75
SNX41	YDR425W	THI72	Q08579	599 aa		4.11	□□□□□ -1.75
SNX41	YDR425W	MET1	P36150	593 aa		4.1	□□□□□ -1.75
SNX41	YDR425W	FIR1	P40020	876 aa		4.1	□□□□□ -1.75
SNX41	YDR425W	QDR1	P40475	563 aa		4.1	□□□□□ -1.75
SNX41	YDR425W	SUT1	P53032	299 aa	Known RBP	4.1	□□□□□ -1.75
SNX41	YDR425W	GLO3	P38682	493 aa	Known RBP	4.09	□□□□□ -1.75
SNX41	YDR425W	RSC2	Q06488	889 aa		4.09	□□□□□ -1.75
SNX41	YDR425W	MRP10	O75012	95 aa		4.09	□□□□□ -1.76
SNX41	YDR425W	NAR1	P23503	491 aa	Known RBP	4.09	□□□□□ -1.76
SNX41	YDR425W	IRS4	P36115	615 aa	Known RBP	4.09	□□□□□ -1.76
SNX41	YDR425W	RAD55	P38953	406 aa		4.09	□□□□□ -1.76
SNX41	YDR425W	UFD2	P54860	961 aa		4.09	□□□□□ -1.76
SNX41	YDR425W	GIS4	Q04233	774 aa		4.09	□□□□□ -1.76
SNX41	YDR425W	TDA6	Q06466	467 aa		4.09	□□□□□ -1.76
SNX41	YDR425W	AIM46	P38885	310 aa		4.08	□□□□□ -1.76
SNX41	YDR425W	PUS1	Q12211	544 aa	Known RBP	4.08	□□□□□ -1.76
SNX41	YDR425W	TIF6	Q12522	245 aa	Known RBP	4.08	□□□□□ -1.76
SNX41	YDR425W	ERP5	P38819	212 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	BOI2	P39969	1040 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	PSY2	P40164	858 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	MDJ2	P42834	146 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	PPT1	P53043	513 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	YNR014W	P53719	212 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	RSC4	Q02206	625 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	SLP1	Q12232	587 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	PGM2	P37012	569 aa	Known RBP	4.07	□□□□□ -1.76
SNX41	YDR425W	SKN7	P38889	622 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	TRS120	Q04183	1289 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	MNL2	Q12205	849 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	HAT1	Q12341	374 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	YPR053C	Q6Q5F3	151 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	YBL113C	Q7M4S9	792 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	NHA1	Q99271	985 aa		4.07	□□□□□ -1.76
SNX41	YDR425W	ALG14	P38242	237 aa		4.06	□□□□□ -1.76
SNX41	YDR425W	INP51	P40559	946 aa	Known RBP	4.05	□□□□□ -1.76
SNX41	YDR425W	BIO5	P53744	561 aa	Known RBP	4.05	□□□□□ -1.76
SNX41	YDR425W	HVG1	P0CE11	249 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	FUS1	P11710	512 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	YCK2	P23292	546 aa	Known RBP	4.05	□□□□□ -1.76
SNX41	YDR425W	AMN1	P38285	549 aa	Predicted RBP	4.05	□□□□□ -1.76
SNX41	YDR425W	SSF1	P38789	453 aa	Predicted RBP	4.05	□□□□□ -1.76
SNX41	YDR425W	ALD3	P54114	506 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	YMR187C	Q03236	431 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	SOG2	Q08817	791 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	YDR215C	Q12240	137 aa		4.05	□□□□□ -1.76
SNX41	YDR425W	CTR9	P89105	1077 aa		4.04	□□□□□ -1.76
SNX41	YDR425W	PYC2	P32327	1180 aa	Known RBP	4.03	□□□□□ -1.76
SNX41	YDR425W	TFA2	P36145	328 aa		4.03	□□□□□ -1.76
SNX41	YDR425W	GRS1	P38088	690 aa	Known RBP	4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 22.5 ms