RNA–Protein interactions for RNA: YDR312W

SSF2, Transcript of Protein required for ribosomal large subunit maturation, yeast

Gene SSF2, Length 1,362 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSF2	YDR312W	PDC5	P16467	563 aa	Known RBP	4.95	□□□□□ -1.62
SSF2	YDR312W	RPC31	P17890	251 aa		4.95	□□□□□ -1.62
SSF2	YDR312W	MRPL33	P20084	86 aa		4.95	□□□□□ -1.62
SSF2	YDR312W	KNS1	P32350	737 aa	Predicted RBP	4.95	□□□□□ -1.62
SSF2	YDR312W	QDR2	P40474	542 aa		4.95	□□□□□ -1.62
SSF2	YDR312W	SBE2	P42223	864 aa	Known RBP	4.95	□□□□□ -1.62
SSF2	YDR312W	LSB3	P43603	459 aa	Known RBP	4.95	□□□□□ -1.62
SSF2	YDR312W	FOX2	Q02207	900 aa	Known RBP	4.95	□□□□□ -1.62
SSF2	YDR312W	HEH2	Q03281	663 aa		4.95	□□□□□ -1.62
SSF2	YDR312W	SRS2	P12954	1174 aa		4.94	□□□□□ -1.62
SSF2	YDR312W	VMA3	P25515	160 aa		4.94	□□□□□ -1.62
SSF2	YDR312W	NCL1	P38205	684 aa	Known RBP	4.94	□□□□□ -1.62
SSF2	YDR312W	CWC15	Q03772	175 aa	Known RBP	4.94	□□□□□ -1.62
SSF2	YDR312W	APM2	P38700	605 aa		4.93	□□□□□ -1.62
SSF2	YDR312W	ISC10	P32645	267 aa		4.92	□□□□□ -1.62
SSF2	YDR312W	YNR014W	P53719	212 aa		4.92	□□□□□ -1.62
SSF2	YDR312W	YNR040W	P53736	256 aa		4.92	□□□□□ -1.62
SSF2	YDR312W	TDA6	Q06466	467 aa		4.92	□□□□□ -1.62
SSF2	YDR312W	MET1	P36150	593 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	DYS1	P38791	387 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	LDH1	P38139	375 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	BOI2	P39969	1040 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	PRK1	P40494	810 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	PNP1	Q05788	311 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	YPR053C	Q6Q5F3	151 aa		4.91	□□□□□ -1.62
SSF2	YDR312W	NAB2	P32505	525 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
SSF2	YDR312W	MCX1	P38323	520 aa	Predicted RBP	4.9	□□□□□ -1.63
SSF2	YDR312W	TPS3	P38426	1054 aa	Known RBP	4.9	□□□□□ -1.63
SSF2	YDR312W	YOR296W	Q08748	1289 aa		4.9	□□□□□ -1.63
SSF2	YDR312W	ITC1	P53125	1264 aa		4.89	□□□□□ -1.63
SSF2	YDR312W	YMR187C	Q03236	431 aa		4.89	□□□□□ -1.63
SSF2	YDR312W	GIP1	P38229	639 aa		4.88	□□□□□ -1.63
SSF2	YDR312W	BSD2	P38356	321 aa		4.88	□□□□□ -1.63
SSF2	YDR312W	SSA1	P10591	642 aa	Known RBP	4.87	□□□□□ -1.63
SSF2	YDR312W	RRN6	P32786	894 aa		4.87	□□□□□ -1.63
SSF2	YDR312W	ISW1	P38144	1129 aa		4.87	□□□□□ -1.63
SSF2	YDR312W	SKN7	P38889	622 aa		4.87	□□□□□ -1.63
SSF2	YDR312W	YER156C	P40093	338 aa	Known RBP	4.87	□□□□□ -1.63
SSF2	YDR312W	IDI1	P15496	288 aa		4.86	□□□□□ -1.63
SSF2	YDR312W	MSN1	P22148	382 aa		4.86	□□□□□ -1.63
SSF2	YDR312W	PGM2	P37012	569 aa	Known RBP	4.86	□□□□□ -1.63
SSF2	YDR312W	ALG14	P38242	237 aa		4.86	□□□□□ -1.63
SSF2	YDR312W	CCT8	P47079	568 aa	Known RBP	4.86	□□□□□ -1.63
SSF2	YDR312W	NHA1	Q99271	985 aa		4.86	□□□□□ -1.63
SSF2	YDR312W	YCK2	P23292	546 aa	Known RBP	4.85	□□□□□ -1.63
SSF2	YDR312W	BOI1	P38041	980 aa	Known RBP	4.85	□□□□□ -1.63
SSF2	YDR312W	NRD1	P53617	575 aa	Known RBP RIP-Chip data	4.85	□□□□□ -1.63	not detected
SSF2	YDR312W	APC11	Q12157	165 aa		4.85	□□□□□ -1.63
SSF2	YDR312W	LSO1	Q3E827	93 aa		4.85	□□□□□ -1.63
SSF2	YDR312W	NAR1	P23503	491 aa	Known RBP	4.84	□□□□□ -1.63
SSF2	YDR312W	HXT8	P40886	569 aa		4.84	□□□□□ -1.63
SSF2	YDR312W	GIS4	Q04233	774 aa		4.84	□□□□□ -1.63
SSF2	YDR312W	YDR215C	Q12240	137 aa		4.84	□□□□□ -1.63
SSF2	YDR312W	MRP10	O75012	95 aa		4.83	□□□□□ -1.64
SSF2	YDR312W	FUR4	P05316	633 aa	Known RBP	4.83	□□□□□ -1.64
SSF2	YDR312W	YBR287W	P38355	427 aa		4.83	□□□□□ -1.64
SSF2	YDR312W	FIR1	P40020	876 aa		4.83	□□□□□ -1.64
SSF2	YDR312W	YIL165C	P40446	119 aa		4.83	□□□□□ -1.64
SSF2	YDR312W	RPL34A	P87262	121 aa	Predicted RBP	4.83	□□□□□ -1.64
SSF2	YDR312W	KTR2	P33550	425 aa		4.82	□□□□□ -1.64
SSF2	YDR312W	GEF1	P37020	779 aa		4.82	□□□□□ -1.64
SSF2	YDR312W	BOL3	P39724	118 aa		4.82	□□□□□ -1.64
SSF2	YDR312W	SLN1	P39928	1220 aa	Predicted RBP	4.82	□□□□□ -1.64
SSF2	YDR312W	SUT1	P53032	299 aa	Known RBP	4.82	□□□□□ -1.64
SSF2	YDR312W	RSC2	Q06488	889 aa		4.82	□□□□□ -1.64
SSF2	YDR312W	EMG1	Q06287	252 aa	Known RBP	4.81	□□□□□ -1.64
SSF2	YDR312W	RPB10	P22139	70 aa		4.8	□□□□□ -1.64
SSF2	YDR312W	RGD2	P43556	714 aa		4.8	□□□□□ -1.64
SSF2	YDR312W	PRY1	P47032	299 aa		4.8	□□□□□ -1.64
SSF2	YDR312W	PPT1	P53043	513 aa		4.8	□□□□□ -1.64
SSF2	YDR312W	TAT1	P38085	619 aa		4.79	□□□□□ -1.64
SSF2	YDR312W	AIM46	P38885	310 aa		4.79	□□□□□ -1.64
SSF2	YDR312W	NTA1	P40354	457 aa		4.79	□□□□□ -1.64
SSF2	YDR312W	BUD9	P53226	547 aa		4.79	□□□□□ -1.64
SSF2	YDR312W	SLP1	Q12232	587 aa		4.79	□□□□□ -1.64
SSF2	YDR312W	SMC1	P32908	1225 aa		4.78	□□□□□ -1.64
SSF2	YDR312W	YJL181W	P46987	611 aa		4.78	□□□□□ -1.64
SSF2	YDR312W	KAR5	Q04746	504 aa		4.78	□□□□□ -1.64
SSF2	YDR312W	AMN1	P38285	549 aa	Predicted RBP	4.78	□□□□□ -1.64
SSF2	YDR312W	RAD55	P38953	406 aa		4.78	□□□□□ -1.64
SSF2	YDR312W	MCA1	Q08601	432 aa		4.78	□□□□□ -1.64
SSF2	YDR312W	IRS4	P36115	615 aa	Known RBP	4.77	□□□□□ -1.65
SSF2	YDR312W	RRM3	P38766	723 aa		4.77	□□□□□ -1.65
SSF2	YDR312W	GIP2	P40036	548 aa		4.77	□□□□□ -1.65
SSF2	YDR312W	INP51	P40559	946 aa	Known RBP	4.77	□□□□□ -1.65
SSF2	YDR312W	SOK2	P53438	785 aa	Predicted RBP	4.77	□□□□□ -1.65
SSF2	YDR312W	TIF6	Q12522	245 aa	Known RBP	4.77	□□□□□ -1.65
SSF2	YDR312W	GLO3	P38682	493 aa	Known RBP	4.76	□□□□□ -1.65
SSF2	YDR312W	PSY2	P40164	858 aa		4.76	□□□□□ -1.65
SSF2	YDR312W	LSB6	P42951	607 aa		4.76	□□□□□ -1.65
SSF2	YDR312W	TY4B-P	A0A0B7P3V8	1104 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	AI3	P03877	415 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	CDC3	P32457	520 aa	Known RBP	4.75	□□□□□ -1.65
SSF2	YDR312W	QDR1	P40475	563 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	TED1	P40533	473 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	ATG1	P53104	897 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	BIO5	P53744	561 aa	Known RBP	4.75	□□□□□ -1.65
SSF2	YDR312W	ALD3	P54114	506 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	YPL034W	Q03083	165 aa		4.75	□□□□□ -1.65
SSF2	YDR312W	GAS5	Q08193	484 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 10.1 ms