RNA–Protein interactions for RNA: YDR227W

SIR4, Transcript of SIR protein involved in assembly of silent chromatin domains, yeast

Gene SIR4, Length 4,077 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR4	YDR227W	TPO2	P53283	614 aa		2.71	□□□□□ -1.98
SIR4	YDR227W	NUP192	P47054	1683 aa		2.71	□□□□□ -1.98
SIR4	YDR227W	ADR1	P07248	1323 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	NUP145	P49687	1317 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	SER1	P33330	395 aa	Known RBP	2.7	□□□□□ -1.98
SIR4	YDR227W	YHL050C	P38721	697 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	YHR219W	P38900	624 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	TY3A-G	Q12173	290 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	YOL098C	Q12496	1037 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	YEL077C	Q3E7X8	1277 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	TY3A-I	Q99219	290 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	SCJ1	P25303	377 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	THI4	P32318	326 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	RPN12	P32496	274 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	YKR018C	P36114	725 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	OSW7	P43611	510 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	ISA1	Q07821	250 aa	Predicted RBP	2.7	□□□□□ -1.98
SIR4	YDR227W	ESS1	P22696	170 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	AFG2	P32794	780 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	GLO3	P38682	493 aa	Known RBP	2.7	□□□□□ -1.98
SIR4	YDR227W	JIP4	Q03361	876 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	DYN1	P36022	4092 aa		2.7	□□□□□ -1.98
SIR4	YDR227W	TTI1	P36097	1038 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	NIT1	P40447	199 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	FAR11	P53917	953 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	NST1	P53935	1240 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	NOB1	Q08444	459 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	SSB1	P11484	613 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	GAL2	P13181	574 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	ERP5	P38819	212 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	SSB2	P40150	613 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	REF2	P42073	533 aa	Predicted RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	DAK2	P43550	591 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	ADE6	P38972	1358 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	ERT1	P38140	529 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	NMD2	P38798	1089 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	RPN11	P43588	306 aa	Known RBP	2.69	□□□□□ -1.98
SIR4	YDR227W	SND1	Q04007	877 aa		2.69	□□□□□ -1.98
SIR4	YDR227W	POL3	P15436	1097 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	PFF1	P38244	976 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	STM1	P39015	273 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	TUM1	Q08686	304 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	HEM1	P09950	548 aa	Predicted RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	RET1	P22276	1149 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	GRX1	P25373	110 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	NAB3	P38996	802 aa	Known RBP RIP-Chip data	2.68	□□□□□ -1.98	not detected
SIR4	YDR227W	OYE3	P41816	400 aa	Predicted RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	YFR016C	P43597	1233 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	ATG36	P46983	293 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	ALO1	P54783	526 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	PUS1	Q12211	544 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	2.68	□□□□□ -1.98	not detected
SIR4	YDR227W	CRP1	P38845	465 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	FPR4	Q06205	392 aa	Predicted RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	YPR084W	Q06821	456 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	AUS1	Q08409	1394 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	ISF1	P32488	338 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	PAH1	P32567	862 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	TYS1	P36421	394 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	TAF5	P38129	798 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	TPM2	P40414	161 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	SQS1	P53866	767 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	HPC2	Q01448	625 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	YDL121C	Q07541	149 aa		2.68	□□□□□ -1.98
SIR4	YDR227W	AIR2	Q12476	344 aa	Known RBP	2.68	□□□□□ -1.98
SIR4	YDR227W	YDJ1	P25491	409 aa	Known RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	SWI3	P32591	825 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	LDH1	P38139	375 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	SLI15	P38283	698 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	KRI1	P42846	591 aa	Known RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	FOL1	P53848	824 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	YMR111C	Q04461	462 aa	Predicted RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	SPR28	Q04921	423 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	EAF1	Q06337	982 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	ECM30	Q06673	1274 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	RRP5	Q05022	1729 aa	Known RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	ENO1	P00924	437 aa	Known RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	SEC6	P32844	805 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	MSH4	P40965	878 aa	Predicted RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	HLJ1	P48353	224 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	PTP1	P25044	335 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	BCK2	P33306	851 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	DRE2	P36152	348 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	ALG12	P53730	551 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	YNL035C	P53962	389 aa	Known RBP	2.67	□□□□□ -1.98
SIR4	YDR227W	DNM1	P54861	757 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	RAD59	Q12223	238 aa		2.67	□□□□□ -1.98
SIR4	YDR227W	SNF2	P22082	1703 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	NSE3	Q05541	303 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	JNM1	P36224	373 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	DSF2	P38213	736 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	UBP14	P38237	781 aa	Known RBP	2.66	□□□□□ -1.98
SIR4	YDR227W	YHL008C	P38750	627 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	FIR1	P40020	876 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	YER158C	P40095	573 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	MDM1	Q01846	1127 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	CHL1	P22516	861 aa	Predicted RBP	2.66	□□□□□ -1.98
SIR4	YDR227W	SEC20	P28791	383 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	SYN8	P31377	255 aa		2.66	□□□□□ -1.98
SIR4	YDR227W	RPS0B	P46654	252 aa	Known RBP	2.66	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 24.2 ms