RNA–Protein interactions for RNA: YDR077W

SED1, Transcript of Major stress-induced structural GPI-cell wall glycoprotein, yeast

Gene SED1, Length 1,017 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SED1	YDR077W	MGM1	P32266	881 aa		11.22	□□□□□ -0.61
SED1	YDR077W	NUG1	P40010	520 aa	Known RBP	11.22	□□□□□ -0.61
SED1	YDR077W	EAF7	P53911	425 aa	Known RBP	11.22	□□□□□ -0.61
SED1	YDR077W	FIG2	P25653	1609 aa		11.21	□□□□□ -0.61
SED1	YDR077W	SRS2	P12954	1174 aa		11.21	□□□□□ -0.61
SED1	YDR077W	FRD1	P32614	470 aa	Known RBP	11.21	□□□□□ -0.61
SED1	YDR077W	ICP55	P40051	511 aa		11.21	□□□□□ -0.61
SED1	YDR077W	ENP2	P48234	707 aa	Known RBP	11.2	□□□□□ -0.62
SED1	YDR077W	SIT4	P20604	311 aa		11.19	□□□□□ -0.62
SED1	YDR077W	PIB2	P53191	635 aa		11.19	□□□□□ -0.62
SED1	YDR077W	UBX2	Q04228	584 aa		11.19	□□□□□ -0.62
SED1	YDR077W	KRI1	P42846	591 aa	Known RBP	11.18	□□□□□ -0.62
SED1	YDR077W	MSN5	P52918	1224 aa		11.18	□□□□□ -0.62
SED1	YDR077W	ERO1	Q03103	563 aa		11.18	□□□□□ -0.62
SED1	YDR077W	CAF20	P12962	161 aa	Known RBP	11.17	□□□□□ -0.62
SED1	YDR077W	OPI1	P21957	404 aa		11.17	□□□□□ -0.62
SED1	YDR077W	SMY1	P32364	656 aa	Known RBP	11.17	□□□□□ -0.62
SED1	YDR077W	GLO3	P38682	493 aa	Known RBP	11.17	□□□□□ -0.62
SED1	YDR077W	YMR147W	P40218	223 aa	Known RBP	11.17	□□□□□ -0.62
SED1	YDR077W	LSP1	Q12230	341 aa	Known RBP	11.17	□□□□□ -0.62
SED1	YDR077W	TRL1	P09880	827 aa	Known RBP	11.16	□□□□□ -0.62
SED1	YDR077W	YKL222C	P35995	705 aa		11.16	□□□□□ -0.62
SED1	YDR077W	VPS24	P36095	224 aa	Known RBP	11.16	□□□□□ -0.62
SED1	YDR077W	HAL5	P38970	855 aa	Known RBP	11.16	□□□□□ -0.62
SED1	YDR077W	SPO22	P40511	975 aa		11.16	□□□□□ -0.62
SED1	YDR077W	CWH41	P53008	833 aa		11.16	□□□□□ -0.62
SED1	YDR077W	RPT4	P53549	437 aa	Known RBP	11.16	□□□□□ -0.62
SED1	YDR077W	ERT1	P38140	529 aa		11.15	□□□□□ -0.62
SED1	YDR077W	KRE2	P27809	442 aa		11.14	□□□□□ -0.63
SED1	YDR077W	SPL2	P38839	148 aa		11.14	□□□□□ -0.63
SED1	YDR077W	FAS2	P19097	1887 aa	Known RBP	11.13	□□□□□ -0.63
SED1	YDR077W	GEF1	P37020	779 aa		11.13	□□□□□ -0.63
SED1	YDR077W	YIR042C	P40586	236 aa		11.13	□□□□□ -0.63
SED1	YDR077W	BBC1	P47068	1157 aa		11.13	□□□□□ -0.63
SED1	YDR077W	INM2	Q05533	292 aa		11.13	□□□□□ -0.63
SED1	YDR077W	PSF3	Q12146	194 aa		11.13	□□□□□ -0.63
SED1	YDR077W	GRX6	Q12438	231 aa		11.13	□□□□□ -0.63
SED1	YDR077W	HKR1	P41809	1802 aa		11.13	□□□□□ -0.63
SED1	YDR077W	CYB2	P00175	591 aa		11.12	□□□□□ -0.63
SED1	YDR077W	NPL4	P33755	580 aa		11.12	□□□□□ -0.63
SED1	YDR077W	AIM9	P40053	627 aa	Known RBP	11.12	□□□□□ -0.63
SED1	YDR077W	IRC8	P47046	822 aa		11.12	□□□□□ -0.63
SED1	YDR077W	IRC4	Q03036	179 aa		11.12	□□□□□ -0.63
SED1	YDR077W	TAH18	Q12181	623 aa		11.12	□□□□□ -0.63
SED1	YDR077W	LAM4	P38800	1345 aa		11.11	□□□□□ -0.63
SED1	YDR077W	VPS20	Q04272	221 aa		11.11	□□□□□ -0.63
SED1	YDR077W	SSF2	Q12153	453 aa	Predicted RBP	11.11	□□□□□ -0.63
SED1	YDR077W	CTT1	P06115	562 aa		11.1	□□□□□ -0.63
SED1	YDR077W	MET1	P36150	593 aa		11.1	□□□□□ -0.63
SED1	YDR077W	CIC1	P38779	376 aa	Known RBP	11.1	□□□□□ -0.63
SED1	YDR077W	PKH3	Q03306	898 aa	Predicted RBP	11.1	□□□□□ -0.63
SED1	YDR077W	KAR5	Q04746	504 aa		11.1	□□□□□ -0.63
SED1	YDR077W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	11.09	□□□□□ -0.63	not detected
SED1	YDR077W	SIS2	P36024	562 aa		11.09	□□□□□ -0.63
SED1	YDR077W	DJP1	P40564	432 aa		11.09	□□□□□ -0.63
SED1	YDR077W	IOC3	P43596	787 aa		11.09	□□□□□ -0.63
SED1	YDR077W	JJJ2	P46997	583 aa		11.09	□□□□□ -0.63
SED1	YDR077W	EAF6	P47128	113 aa		11.09	□□□□□ -0.63
SED1	YDR077W	LCB1	P25045	558 aa	Known RBP	11.08	□□□□□ -0.64
SED1	YDR077W	BOI1	P38041	980 aa	Known RBP	11.08	□□□□□ -0.64
SED1	YDR077W	GRX7	P38068	203 aa		11.08	□□□□□ -0.64
SED1	YDR077W	RRP8	P38961	392 aa	Known RBP	11.08	□□□□□ -0.64
SED1	YDR077W	TIF4632	P39936	914 aa	Known RBP	11.08	□□□□□ -0.64
SED1	YDR077W	NPA3	P47122	385 aa		11.08	□□□□□ -0.64
SED1	YDR077W	PEP3	P27801	918 aa		11.07	□□□□□ -0.64
SED1	YDR077W	RPT3	P33298	428 aa	Known RBP	11.07	□□□□□ -0.64
SED1	YDR077W	MDL2	P33311	773 aa		11.07	□□□□□ -0.64
SED1	YDR077W	PTK1	P36002	662 aa	Predicted RBP	11.07	□□□□□ -0.64
SED1	YDR077W	SNF7	P39929	240 aa	Known RBP	11.07	□□□□□ -0.64
SED1	YDR077W	YER156C	P40093	338 aa	Known RBP	11.07	□□□□□ -0.64
SED1	YDR077W	YFH7	P43591	353 aa		11.07	□□□□□ -0.64
SED1	YDR077W	RET1	P22276	1149 aa	Known RBP	11.06	□□□□□ -0.64
SED1	YDR077W	CDC27	P38042	758 aa		11.06	□□□□□ -0.64
SED1	YDR077W	ARP5	P53946	755 aa		11.06	□□□□□ -0.64
SED1	YDR077W	ESF1	Q06344	628 aa	Known RBP	11.06	□□□□□ -0.64
SED1	YDR077W	PGA3	Q12746	312 aa	Known RBP	11.06	□□□□□ -0.64
SED1	YDR077W	RPL19A	P0CX82	189 aa	Known RBP	11.05	□□□□□ -0.64
SED1	YDR077W	RPL19B	P0CX83	189 aa	Predicted RBP	11.05	□□□□□ -0.64
SED1	YDR077W	BIK1	P11709	440 aa		11.05	□□□□□ -0.64
SED1	YDR077W	IMP2'	P32351	346 aa		11.05	□□□□□ -0.64
SED1	YDR077W	ROX1	P25042	368 aa		11.04	□□□□□ -0.64
SED1	YDR077W	MSP1	P28737	362 aa		11.04	□□□□□ -0.64
SED1	YDR077W	TTI1	P36097	1038 aa		11.04	□□□□□ -0.64
SED1	YDR077W	SET4	P42948	560 aa		11.04	□□□□□ -0.64
SED1	YDR077W	SPN1	Q06505	410 aa	Predicted RBP	11.04	□□□□□ -0.64
SED1	YDR077W	WRS1	Q12109	432 aa	Known RBP	11.04	□□□□□ -0.64
SED1	YDR077W	YKU70	P32807	602 aa		11.03	□□□□□ -0.64
SED1	YDR077W	CRG1	P38892	291 aa	RIP-Chip data	11.03	□□□□□ -0.64	not detected
SED1	YDR077W	SLN1	P39928	1220 aa	Predicted RBP	11.03	□□□□□ -0.64
SED1	YDR077W	VID28	P40547	921 aa		11.03	□□□□□ -0.64
SED1	YDR077W	YKE2	P52553	114 aa		11.03	□□□□□ -0.64
SED1	YDR077W	PIP2	P52960	996 aa		11.03	□□□□□ -0.64
SED1	YDR077W	KIN4	Q01919	800 aa		11.03	□□□□□ -0.64
SED1	YDR077W	TOS4	Q06266	489 aa		11.03	□□□□□ -0.64
SED1	YDR077W	PPM2	Q08282	695 aa		11.03	□□□□□ -0.64
SED1	YDR077W	ICL1	P28240	557 aa	Predicted RBP	11.02	□□□□□ -0.65
SED1	YDR077W	PEX14	P53112	341 aa		11.02	□□□□□ -0.65
SED1	YDR077W	HST1	P53685	503 aa		11.02	□□□□□ -0.65
SED1	YDR077W	PRP42	Q03776	544 aa	Known RBP	11.02	□□□□□ -0.65
SED1	YDR077W	COG8	Q04632	607 aa		11.02	□□□□□ -0.65

Retrieved 100 of 5,963 RNA–protein pairs in 55.3 ms