RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 ZMYM3Q14202 1370 aa28.34■■■□□ 2.13
LIME1-210ENST00000621325 PDE3BQ13370 1112 aa28.34■■■□□ 2.13
LIME1-210ENST00000621325 PTPRMP28827 1452 aa28.34■■■□□ 2.13
LIME1-210ENST00000621325 PRAM1Q96QH2 718 aa28.33■■■□□ 2.13
LIME1-210ENST00000621325 ESF1Q9H501 851 aaKnown RBP28.33■■■□□ 2.13
LIME1-210ENST00000621325 PUS7Q96PZ0 661 aaKnown RBP28.31■■■□□ 2.12
LIME1-210ENST00000621325 MINK1Q8N4C8 1332 aaPredicted RBP28.3■■■□□ 2.12
LIME1-210ENST00000621325 RIMS2Q9UQ26 1411 aa28.3■■■□□ 2.12
LIME1-210ENST00000621325 B4GALNT3Q6L9W6 998 aa28.3■■■□□ 2.12
LIME1-210ENST00000621325 TNNT2P45379 298 aaPredicted RBP28.29■■■□□ 2.12
LIME1-210ENST00000621325 POGKQ9P215 609 aa28.28■■■□□ 2.12
LIME1-210ENST00000621325 MORC1Q86VD1 984 aa28.28■■■□□ 2.12
LIME1-210ENST00000621325 SRPK2P78362 688 aaKnown RBP28.27■■■□□ 2.12
LIME1-210ENST00000621325 PLEKHH1Q9ULM0 1364 aa28.26■■■□□ 2.11
LIME1-210ENST00000621325 CCDC146Q8IYE0 955 aa28.26■■■□□ 2.11
LIME1-210ENST00000621325 ANKRD36BQ8N2N9 1353 aa28.25■■■□□ 2.11
LIME1-210ENST00000621325 RCAN3Q9UKA8 241 aa28.25■■■□□ 2.11
LIME1-210ENST00000621325 CGNL1Q0VF96 1302 aa28.23■■■□□ 2.11
LIME1-210ENST00000621325 USP32Q8NFA0 1604 aa28.2■■■□□ 2.1
LIME1-210ENST00000621325 RRP1P56182 461 aaKnown RBP28.19■■■□□ 2.1
LIME1-210ENST00000621325 A0A1W2PP64 1363 aa28.18■■■□□ 2.1
LIME1-210ENST00000621325 POLR3AO14802 1390 aaPredicted RBP28.18■■■□□ 2.1
LIME1-210ENST00000621325 WAPLQ7Z5K2 1190 aa28.18■■■□□ 2.1
LIME1-210ENST00000621325 TNRQ92752 1358 aa28.17■■■□□ 2.1
LIME1-210ENST00000621325 ZNF521Q96K83 1311 aa28.17■■■□□ 2.1
LIME1-210ENST00000621325 SETD1AO15047 1707 aaKnown RBP28.16■■■□□ 2.1
LIME1-210ENST00000621325 APAF1O14727 1248 aa28.16■■■□□ 2.1
LIME1-210ENST00000621325 CDK19Q9BWU1 502 aa28.16■■■□□ 2.1
LIME1-210ENST00000621325 ATAD2Q6PL18 1390 aa28.14■■■□□ 2.1
LIME1-210ENST00000621325 NRXN3Q9Y4C0 1643 aa28.13■■■□□ 2.09
LIME1-210ENST00000621325 NINLQ9Y2I6 1382 aa28.13■■■□□ 2.09
LIME1-210ENST00000621325 MTHFSP49914 203 aa28.12■■■□□ 2.09
LIME1-210ENST00000621325 METP08581 1390 aa28.12■■■□□ 2.09
LIME1-210ENST00000621325 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.12■■■□□ 2.09
LIME1-210ENST00000621325 CD163L1Q9NR16 1453 aa28.11■■■□□ 2.09
LIME1-210ENST00000621325 CEBPAP49715 358 aaPredicted RBP28.1■■■□□ 2.09
LIME1-210ENST00000621325 ABCC11Q96J66 1382 aa28.1■■■□□ 2.09
LIME1-210ENST00000621325 DLC1Q96QB1 1528 aa28.09■■■□□ 2.09
LIME1-210ENST00000621325 NSD2O96028 1365 aa28.09■■■□□ 2.09
LIME1-210ENST00000621325 GOLGA2Q08379 1002 aa28.09■■■□□ 2.09
LIME1-210ENST00000621325 DUSP27Q5VZP5 1158 aa28.09■■■□□ 2.09
LIME1-210ENST00000621325 SHPRHQ149N8 1683 aa28.08■■■□□ 2.09
LIME1-210ENST00000621325 GGNBP2Q9H3C7 697 aa28.08■■■□□ 2.09
LIME1-210ENST00000621325 TERF2IPQ9NYB0 399 aa28.07■■■□□ 2.08
LIME1-210ENST00000621325 CABP1Q9NZU7 370 aa28.07■■■□□ 2.08
LIME1-210ENST00000621325 PLIN1O60240 522 aa28.06■■■□□ 2.08
LIME1-210ENST00000621325 CCDC136Q96JN2 1154 aa28.06■■■□□ 2.08
LIME1-210ENST00000621325 EXOC6Q8TAG9 804 aa28.05■■■□□ 2.08
LIME1-210ENST00000621325 TMEM2Q9UHN6 1383 aa28.05■■■□□ 2.08
LIME1-210ENST00000621325 TXNDC2Q86VQ3 553 aa28.04■■■□□ 2.08
LIME1-210ENST00000621325 SPINK5Q9NQ38 1064 aaPredicted RBP28.04■■■□□ 2.08
LIME1-210ENST00000621325 UBR1Q8IWV7 1749 aa28.03■■■□□ 2.08
LIME1-210ENST00000621325 FYB1O15117 783 aa28.03■■■□□ 2.08
LIME1-210ENST00000621325 SLFN5Q08AF3 891 aa28.03■■■□□ 2.08
LIME1-210ENST00000621325 RBM19Q9Y4C8 960 aaKnown RBP28.02■■■□□ 2.08
LIME1-210ENST00000621325 HDGFP51858 240 aaKnown RBP28.01■■■□□ 2.07
LIME1-210ENST00000621325 PLPPR3Q6T4P5 718 aa28.01■■■□□ 2.07
LIME1-210ENST00000621325 DMRT2Q9Y5R5 561 aa28.01■■■□□ 2.07
LIME1-210ENST00000621325 TRHP20396 242 aaPredicted RBP28■■■□□ 2.07
LIME1-210ENST00000621325 HDGFL2Q7Z4V5 671 aaPredicted RBP28■■■□□ 2.07
LIME1-210ENST00000621325 CFAP53Q96M91 514 aa28■■■□□ 2.07
LIME1-210ENST00000621325 NLRP1Q9C000 1473 aa28■■■□□ 2.07
LIME1-210ENST00000621325 TRMT2AQ8IZ69 625 aaKnown RBP27.98■■■□□ 2.07
LIME1-210ENST00000621325 LTKP29376 864 aa27.97■■■□□ 2.07
LIME1-210ENST00000621325 ANO8Q9HCE9 1232 aaPredicted RBP27.96■■■□□ 2.07
LIME1-210ENST00000621325 RRP7AQ9Y3A4 280 aaKnown RBP27.96■■■□□ 2.07
LIME1-210ENST00000621325 WASLO00401 505 aaPredicted RBP27.95■■■□□ 2.06
LIME1-210ENST00000621325 RUNDC1Q96C34 613 aa27.94■■■□□ 2.06
LIME1-210ENST00000621325 NEUROD2Q15784 382 aa27.94■■■□□ 2.06
LIME1-210ENST00000621325 WWC1Q8IX03 1113 aa27.93■■■□□ 2.06
LIME1-210ENST00000621325 ADAMTS13Q76LX8 1427 aa27.93■■■□□ 2.06
LIME1-210ENST00000621325 SUGP2Q8IX01 1082 aaKnown RBP eCLIP27.92■■■□□ 2.06
LIME1-210ENST00000621325 TCP11L2Q8N4U5 519 aa27.92■■■□□ 2.06
LIME1-210ENST00000621325 TECPR2O15040 1411 aa27.92■■■□□ 2.06
LIME1-210ENST00000621325 NGEFQ8N5V2 710 aa27.91■■■□□ 2.06
LIME1-210ENST00000621325 NCKAP5LQ9HCH0 1330 aa27.91■■■□□ 2.06
LIME1-210ENST00000621325 MED14O60244 1454 aa27.91■■■□□ 2.06
LIME1-210ENST00000621325 U2AF1L5P0DN76 240 aaPredicted RBP27.91■■■□□ 2.06
LIME1-210ENST00000621325 U2AF1Q01081 240 aaKnown RBP eCLIP27.91■■■□□ 2.06
LIME1-210ENST00000621325 C20orf194Q5TEA3 1177 aa27.91■■■□□ 2.06
LIME1-210ENST00000621325 FAM135BQ49AJ0 1406 aa27.9■■■□□ 2.06
LIME1-210ENST00000621325 E9PSI1 815 aa27.9■■■□□ 2.06
LIME1-210ENST00000621325 IQSEC2Q5JU85 1478 aa27.9■■■□□ 2.06
LIME1-210ENST00000621325 C3P01024 1663 aa27.9■■■□□ 2.06
LIME1-210ENST00000621325 ROBO2Q9HCK4 1378 aa27.89■■■□□ 2.06
LIME1-210ENST00000621325 ATP7BP35670 1465 aa27.89■■■□□ 2.05
LIME1-210ENST00000621325 CRBNQ96SW2 442 aa27.89■■■□□ 2.05
LIME1-210ENST00000621325 ANKRD26Q9UPS8 1709 aa27.89■■■□□ 2.05
LIME1-210ENST00000621325 KNDC1Q76NI1 1749 aa27.88■■■□□ 2.05
LIME1-210ENST00000621325 SIRT1Q96EB6 747 aa27.88■■■□□ 2.05
LIME1-210ENST00000621325 PPIP5K1Q6PFW1 1433 aa27.87■■■□□ 2.05
LIME1-210ENST00000621325 CPS1P31327 1500 aa27.87■■■□□ 2.05
LIME1-210ENST00000621325 PLEKHG1Q9ULL1 1385 aa27.87■■■□□ 2.05
LIME1-210ENST00000621325 NKTRP30414 1462 aaKnown RBP27.86■■■□□ 2.05
LIME1-210ENST00000621325 NUDT16Q96DE0 195 aaKnown RBP27.86■■■□□ 2.05
LIME1-210ENST00000621325 SLC26A8Q96RN1 970 aa27.86■■■□□ 2.05
LIME1-210ENST00000621325 FBLN1P23142 703 aa27.86■■■□□ 2.05
LIME1-210ENST00000621325 COL3A1P02461 1466 aaPredicted RBP27.86■■■□□ 2.05
LIME1-210ENST00000621325 KIF20BQ96Q89 1820 aa27.84■■■□□ 2.05
LIME1-210ENST00000621325 FER1L4A9Z1Z3 1794 aa27.84■■■□□ 2.05
Retrieved 100 of 20,778 RNA–protein pairs in 198.5 ms