RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 TEX14Q8IWB6 1497 aa17.24■□□□□ 0.35
CNOT3-210ENST00000618939 SKAP1Q86WV1 359 aa17.24■□□□□ 0.35
CNOT3-210ENST00000618939 ZRSR1Q15695 479 aaKnown RBP17.23■□□□□ 0.35
CNOT3-210ENST00000618939 ADGRL1O94910 1474 aa17.22■□□□□ 0.35
CNOT3-210ENST00000618939 PARD3Q8TEW0 1356 aa17.22■□□□□ 0.35
CNOT3-210ENST00000618939 FAM135AQ9P2D6 1515 aa17.22■□□□□ 0.35
CNOT3-210ENST00000618939 GOLGA6L4A6NEF3 574 aa17.22■□□□□ 0.35
CNOT3-210ENST00000618939 CT47B1P0C2W7 299 aaPredicted RBP17.22■□□□□ 0.35
CNOT3-210ENST00000618939 CABP1Q9NZU7 370 aa17.21■□□□□ 0.35
CNOT3-210ENST00000618939 SHANK2Q9UPX8 1470 aa17.21■□□□□ 0.35
CNOT3-210ENST00000618939 SYCP2Q9BX26 1530 aa17.21■□□□□ 0.35
CNOT3-210ENST00000618939 CDK19Q9BWU1 502 aa17.2■□□□□ 0.34
CNOT3-210ENST00000618939 ARHGEF12Q9NZN5 1544 aa17.2■□□□□ 0.34
CNOT3-210ENST00000618939 MVPQ14764 893 aaKnown RBP17.2■□□□□ 0.34
CNOT3-210ENST00000618939 NOL8Q76FK4 1167 aaKnown RBP17.2■□□□□ 0.34
CNOT3-210ENST00000618939 TESK2Q96S53 571 aa17.2■□□□□ 0.34
CNOT3-210ENST00000618939 HDAC5Q9UQL6 1122 aa17.2■□□□□ 0.34
CNOT3-210ENST00000618939 NOB1Q9ULX3 412 aaKnown RBP17.19■□□□□ 0.34
CNOT3-210ENST00000618939 NKTRP30414 1462 aaKnown RBP17.19■□□□□ 0.34
CNOT3-210ENST00000618939 NAP1L2Q9ULW6 460 aaPredicted RBP17.19■□□□□ 0.34
CNOT3-210ENST00000618939 ATAD2Q6PL18 1390 aa17.19■□□□□ 0.34
CNOT3-210ENST00000618939 ATF7IPQ6VMQ6 1270 aa17.19■□□□□ 0.34
CNOT3-210ENST00000618939 FRAT2O75474 233 aaPredicted RBP17.18■□□□□ 0.34
CNOT3-210ENST00000618939 NUP160Q12769 1436 aa17.18■□□□□ 0.34
CNOT3-210ENST00000618939 PLCH2O75038 1416 aa17.17■□□□□ 0.34
CNOT3-210ENST00000618939 ADGRL2O95490 1459 aa17.17■□□□□ 0.34
CNOT3-210ENST00000618939 AMER1Q5JTC6 1135 aaPredicted RBP17.17■□□□□ 0.34
CNOT3-210ENST00000618939 RILPL2Q969X0 211 aa17.17■□□□□ 0.34
CNOT3-210ENST00000618939 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.17■□□□□ 0.34
CNOT3-210ENST00000618939 DDX49Q9Y6V7 483 aaKnown RBP17.17■□□□□ 0.34
CNOT3-210ENST00000618939 DUOX2Q9NRD8 1548 aa17.17■□□□□ 0.34
CNOT3-210ENST00000618939 REC8O95072 547 aa17.17■□□□□ 0.34
CNOT3-210ENST00000618939 PBRM1Q86U86 1689 aa17.16■□□□□ 0.34
CNOT3-210ENST00000618939 SYAP1Q96A49 352 aaPredicted RBP17.16■□□□□ 0.34
CNOT3-210ENST00000618939 SKOR2Q2VWA4 1001 aaPredicted RBP17.16■□□□□ 0.34
CNOT3-210ENST00000618939 CSB-PGBD3P0DP91 1061 aa17.16■□□□□ 0.34
CNOT3-210ENST00000618939 GPATCH3Q96I76 525 aa17.16■□□□□ 0.34
CNOT3-210ENST00000618939 FANCAO15360 1455 aa17.16■□□□□ 0.34
CNOT3-210ENST00000618939 UHRF1BP1Q6BDS2 1440 aa17.16■□□□□ 0.34
CNOT3-210ENST00000618939 RARSP54136 660 aaKnown RBP17.15■□□□□ 0.34
CNOT3-210ENST00000618939 EIF4G3O43432 1585 aaKnown RBP17.15■□□□□ 0.34
CNOT3-210ENST00000618939 TMPOP42166 694 aaKnown RBP17.15■□□□□ 0.34
CNOT3-210ENST00000618939 GCC2Q8IWJ2 1684 aa17.15■□□□□ 0.34
CNOT3-210ENST00000618939 LRPPRCP42704 1394 aaKnown RBP17.15■□□□□ 0.34
CNOT3-210ENST00000618939 TWISTNBQ3B726 338 aaPredicted RBP17.15■□□□□ 0.34
CNOT3-210ENST00000618939 TSPYL4Q9UJ04 414 aa17.15■□□□□ 0.34
CNOT3-210ENST00000618939 CD109Q6YHK3 1445 aa17.14■□□□□ 0.33
CNOT3-210ENST00000618939 FKBP5Q13451 457 aaPredicted RBP17.14■□□□□ 0.33
CNOT3-210ENST00000618939 PER1O15534 1290 aaPredicted RBP17.13■□□□□ 0.33
CNOT3-210ENST00000618939 FOXD4L5Q5VV16 416 aaPredicted RBP17.13■□□□□ 0.33
CNOT3-210ENST00000618939 TXNDC2Q86VQ3 553 aa17.13■□□□□ 0.33
CNOT3-210ENST00000618939 FOXD4L4Q8WXT5 416 aaPredicted RBP17.13■□□□□ 0.33
CNOT3-210ENST00000618939 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
CNOT3-210ENST00000618939 NOS1P29475 1434 aa17.13■□□□□ 0.33
CNOT3-210ENST00000618939 CDC45O75419 566 aa17.12■□□□□ 0.33
CNOT3-210ENST00000618939 TEFQ10587 303 aa17.12■□□□□ 0.33
CNOT3-210ENST00000618939 INTS3Q68E01 1043 aaKnown RBP17.12■□□□□ 0.33
CNOT3-210ENST00000618939 C1orf115Q9H7X2 142 aa17.12■□□□□ 0.33
CNOT3-210ENST00000618939 TAOK2Q9UL54 1235 aa17.11■□□□□ 0.33
CNOT3-210ENST00000618939 FCHSD2O94868 740 aa17.11■□□□□ 0.33
CNOT3-210ENST00000618939 C14orf93Q9H972 538 aaKnown RBP17.11■□□□□ 0.33
CNOT3-210ENST00000618939 GCC1Q96CN9 775 aa17.11■□□□□ 0.33
CNOT3-210ENST00000618939 KDM5BQ9UGL1 1544 aa17.1■□□□□ 0.33
CNOT3-210ENST00000618939 RTEL1-TNFRSF6BF6WH68 1400 aa17.1■□□□□ 0.33
CNOT3-210ENST00000618939 EIF2S2P20042 333 aaKnown RBP17.1■□□□□ 0.33
CNOT3-210ENST00000618939 SPATA31E1Q6ZUB1 1445 aa17.1■□□□□ 0.33
CNOT3-210ENST00000618939 TRAPPC8Q9Y2L5 1435 aa17.1■□□□□ 0.33
CNOT3-210ENST00000618939 ASXL1Q8IXJ9 1541 aa17.09■□□□□ 0.33
CNOT3-210ENST00000618939 TARBP1Q13395 1621 aaKnown RBP17.08■□□□□ 0.33
CNOT3-210ENST00000618939 IDI1Q13907 227 aa17.08■□□□□ 0.32
CNOT3-210ENST00000618939 SULT6B1Q6IMI4 303 aa17.07■□□□□ 0.32
CNOT3-210ENST00000618939 ZNF428Q96B54 188 aa17.07■□□□□ 0.32
CNOT3-210ENST00000618939 TMEM57Q8N5G2 664 aa17.07■□□□□ 0.32
CNOT3-210ENST00000618939 SSH1Q8WYL5 1049 aa17.07■□□□□ 0.32
CNOT3-210ENST00000618939 C1orf141Q5JVX7 400 aa17.07■□□□□ 0.32
CNOT3-210ENST00000618939 ZNF692Q9BU19 519 aaPredicted RBP17.06■□□□□ 0.32
CNOT3-210ENST00000618939 ANO2Q9NQ90 1003 aa17.06■□□□□ 0.32
CNOT3-210ENST00000618939 KDM6BO15054 1643 aa17.06■□□□□ 0.32
CNOT3-210ENST00000618939 EIF2AK4Q9P2K8 1649 aaKnown RBP17.06■□□□□ 0.32
CNOT3-210ENST00000618939 COL17A1Q9UMD9 1497 aaPredicted RBP17.06■□□□□ 0.32
CNOT3-210ENST00000618939 NLRP6P59044 892 aa17.06■□□□□ 0.32
CNOT3-210ENST00000618939 NFE2L2Q16236 605 aa17.05■□□□□ 0.32
CNOT3-210ENST00000618939 GPRASP1Q5JY77 1395 aa17.05■□□□□ 0.32
CNOT3-210ENST00000618939 NUCB2P80303 420 aa17.05■□□□□ 0.32
CNOT3-210ENST00000618939 KIAA2012Q0VF49 1180 aa17.05■□□□□ 0.32
CNOT3-210ENST00000618939 A2MP01023 1474 aa17.05■□□□□ 0.32
CNOT3-210ENST00000618939 CHD1LQ86WJ1 897 aa17.04■□□□□ 0.32
CNOT3-210ENST00000618939 CHMP3Q9Y3E7 222 aa17.04■□□□□ 0.32
CNOT3-210ENST00000618939 ABCC11Q96J66 1382 aa17.04■□□□□ 0.32
CNOT3-210ENST00000618939 BRPF3Q9ULD4 1205 aa17.04■□□□□ 0.32
CNOT3-210ENST00000618939 ZNF330Q9Y3S2 320 aaPredicted RBP17.04■□□□□ 0.32
CNOT3-210ENST00000618939 TRAK2O60296 914 aa17.03■□□□□ 0.32
CNOT3-210ENST00000618939 RRS1Q15050 365 aaKnown RBP17.03■□□□□ 0.32
CNOT3-210ENST00000618939 CHAF1AQ13111 956 aaPredicted RBP17.03■□□□□ 0.32
CNOT3-210ENST00000618939 FOXD4L6Q3SYB3 417 aaPredicted RBP17.03■□□□□ 0.32
CNOT3-210ENST00000618939 FOXD4L3Q6VB84 417 aaPredicted RBP17.03■□□□□ 0.32
CNOT3-210ENST00000618939 C9orf78Q9NZ63 289 aaPredicted RBP17.03■□□□□ 0.32
CNOT3-210ENST00000618939 NSD2O96028 1365 aa17.03■□□□□ 0.32
CNOT3-210ENST00000618939 GOLGA6L6A8MZA4 724 aa17.03■□□□□ 0.32
CNOT3-210ENST00000618939 NUTM2GQ5VZR2 741 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms