RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TMF1P82094 1093 aa12.94□□□□□ -0.34
VPS39-214ENST00000614932 E9PCH4 1651 aa12.93□□□□□ -0.34
VPS39-214ENST00000614932 CD109Q6YHK3 1445 aa12.93□□□□□ -0.34
VPS39-214ENST00000614932 DYNC1I1O14576 645 aa12.93□□□□□ -0.34
VPS39-214ENST00000614932 MAGI2Q86UL8 1455 aa12.93□□□□□ -0.34
VPS39-214ENST00000614932 RTEL1-TNFRSF6BF6WH68 1400 aa12.92□□□□□ -0.34
VPS39-214ENST00000614932 BECN1Q14457 450 aa12.92□□□□□ -0.34
VPS39-214ENST00000614932 MYBBP1AQ9BQG0 1328 aaKnown RBP12.92□□□□□ -0.34
VPS39-214ENST00000614932 ADGRF5Q8IZF2 1346 aa12.92□□□□□ -0.34
VPS39-214ENST00000614932 PER1O15534 1290 aaPredicted RBP12.91□□□□□ -0.34
VPS39-214ENST00000614932 SLKQ9H2G2 1235 aaPredicted RBP12.91□□□□□ -0.34
VPS39-214ENST00000614932 R3HCC1Q9Y3T6 440 aaKnown RBP12.91□□□□□ -0.34
VPS39-214ENST00000614932 UQCRHLA0A096LP55 91 aa12.91□□□□□ -0.34
VPS39-214ENST00000614932 UQCRHP07919 91 aa12.91□□□□□ -0.34
VPS39-214ENST00000614932 ZSCAN30Q86W11 494 aa12.91□□□□□ -0.34
VPS39-214ENST00000614932 DNTTIP2Q5QJE6 756 aaKnown RBP12.9□□□□□ -0.34
VPS39-214ENST00000614932 CFAP65Q6ZU64 1925 aaKnown RBP12.9□□□□□ -0.34
VPS39-214ENST00000614932 IRX3P78415 501 aaPredicted RBP12.9□□□□□ -0.34
VPS39-214ENST00000614932 KTN1Q86UP2 1357 aaKnown RBP12.9□□□□□ -0.34
VPS39-214ENST00000614932 ABCA9Q8IUA7 1624 aa12.9□□□□□ -0.34
VPS39-214ENST00000614932 RGS22Q8NE09 1264 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 ANTXR1Q9H6X2 564 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 RCAN3Q9UKA8 241 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 GPRASP1Q5JY77 1395 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 MCM4P33991 863 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 RALBP1Q15311 655 aa12.89□□□□□ -0.35
VPS39-214ENST00000614932 CLTCL1P53675 1640 aa12.88□□□□□ -0.35
VPS39-214ENST00000614932 MSNP26038 577 aaKnown RBP12.88□□□□□ -0.35
VPS39-214ENST00000614932 TRAK2O60296 914 aa12.88□□□□□ -0.35
VPS39-214ENST00000614932 TMEM132EQ6IEE7 984 aa12.87□□□□□ -0.35
VPS39-214ENST00000614932 SAMD1Q6SPF0 538 aaPredicted RBP12.87□□□□□ -0.35
VPS39-214ENST00000614932 COL17A1Q9UMD9 1497 aaPredicted RBP12.87□□□□□ -0.35
VPS39-214ENST00000614932 INO80Q9ULG1 1556 aaPredicted RBP12.86□□□□□ -0.35
VPS39-214ENST00000614932 PRDM15P57071 1507 aaPredicted RBP12.86□□□□□ -0.35
VPS39-214ENST00000614932 NLRP13Q86W25 1043 aa12.86□□□□□ -0.35
VPS39-214ENST00000614932 RNF216Q9NWF9 866 aaPredicted RBP12.86□□□□□ -0.35
VPS39-214ENST00000614932 BCCIPQ9P287 314 aaKnown RBP eCLIP12.86□□□□□ -0.35
VPS39-214ENST00000614932 TRAK1Q9UPV9 953 aa12.85□□□□□ -0.35
VPS39-214ENST00000614932 ARAP3Q8WWN8 1544 aa12.85□□□□□ -0.35
VPS39-214ENST00000614932 TRPM2O94759 1503 aa12.85□□□□□ -0.35
VPS39-214ENST00000614932 CCDC173Q0VFZ6 552 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 KNSTRNQ9Y448 316 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 PTPRTO14522 1441 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 CDCA7LQ96GN5 454 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 SPHKAPQ2M3C7 1700 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 ZNF518AQ6AHZ1 1483 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 KIDINS220Q9ULH0 1771 aa12.84□□□□□ -0.35
VPS39-214ENST00000614932 BRD4O60885 1362 aaPredicted RBP12.84□□□□□ -0.35
VPS39-214ENST00000614932 KDM2BQ8NHM5 1336 aa12.83□□□□□ -0.36
VPS39-214ENST00000614932 ZBTB22O15209 634 aa12.83□□□□□ -0.36
VPS39-214ENST00000614932 PARD3Q8TEW0 1356 aa12.83□□□□□ -0.36
VPS39-214ENST00000614932 SAFB2Q14151 953 aaKnown RBP eCLIP12.83□□□□□ -0.36
VPS39-214ENST00000614932 CENPQQ7L2Z9 268 aaPredicted RBP12.83□□□□□ -0.36
VPS39-214ENST00000614932 PPP1R9BQ96SB3 815 aa12.83□□□□□ -0.36
VPS39-214ENST00000614932 MADDQ8WXG6 1647 aa12.82□□□□□ -0.36
VPS39-214ENST00000614932 CGNQ9P2M7 1197 aaKnown RBP12.82□□□□□ -0.36
VPS39-214ENST00000614932 EIF2AK4Q9P2K8 1649 aaKnown RBP12.82□□□□□ -0.36
VPS39-214ENST00000614932 SLC20A2Q08357 652 aa12.81□□□□□ -0.36
VPS39-214ENST00000614932 AMER1Q5JTC6 1135 aaPredicted RBP12.81□□□□□ -0.36
VPS39-214ENST00000614932 MROH1Q8NDA8 1641 aa12.81□□□□□ -0.36
VPS39-214ENST00000614932 TET3O43151 1660 aa12.81□□□□□ -0.36
VPS39-214ENST00000614932 NOS1P29475 1434 aa12.81□□□□□ -0.36
VPS39-214ENST00000614932 POGZQ7Z3K3 1410 aa12.81□□□□□ -0.36
VPS39-214ENST00000614932 USP19O94966 1318 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 DEPDC5O75140 1603 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 CBX1P83916 185 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 CRBNQ96SW2 442 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 CEP152O94986 1710 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 FAM69CQ0P6D2 419 aa12.8□□□□□ -0.36
VPS39-214ENST00000614932 SCAF11Q99590 1463 aaKnown RBP12.79□□□□□ -0.36
VPS39-214ENST00000614932 ZNF500O60304 480 aaPredicted RBP12.79□□□□□ -0.36
VPS39-214ENST00000614932 ADAMTS8Q9UP79 889 aa12.79□□□□□ -0.36
VPS39-214ENST00000614932 LRPPRCP42704 1394 aaKnown RBP12.79□□□□□ -0.36
VPS39-214ENST00000614932 E9PSI1 815 aa12.79□□□□□ -0.36
VPS39-214ENST00000614932 DNAJC2Q99543 621 aaKnown RBP12.79□□□□□ -0.36
VPS39-214ENST00000614932 NPATQ14207 1427 aa12.78□□□□□ -0.36
VPS39-214ENST00000614932 PPRC1Q5VV67 1664 aaKnown RBP12.78□□□□□ -0.36
VPS39-214ENST00000614932 IRX5P78411 483 aaPredicted RBP12.78□□□□□ -0.36
VPS39-214ENST00000614932 MLECQ14165 292 aa12.78□□□□□ -0.36
VPS39-214ENST00000614932 CSPP1Q1MSJ5 1256 aa12.78□□□□□ -0.36
VPS39-214ENST00000614932 SASS6Q6UVJ0 657 aa12.78□□□□□ -0.36
VPS39-214ENST00000614932 CCDC146Q8IYE0 955 aa12.78□□□□□ -0.36
VPS39-214ENST00000614932 VIRMAQ69YN4 1812 aaKnown RBP12.78□□□□□ -0.36
VPS39-214ENST00000614932 DDX11L8A8MPP1 907 aa12.77□□□□□ -0.36
VPS39-214ENST00000614932 PPP2R1AP30153 589 aa12.77□□□□□ -0.36
VPS39-214ENST00000614932 STK26Q9P289 416 aa12.77□□□□□ -0.36
VPS39-214ENST00000614932 VWDEQ8N2E2 1590 aa12.77□□□□□ -0.37
VPS39-214ENST00000614932 YEATS2Q9ULM3 1422 aa12.76□□□□□ -0.37
VPS39-214ENST00000614932 HS1BP3Q53T59 392 aa12.76□□□□□ -0.37
VPS39-214ENST00000614932 GAS2L3Q86XJ1 694 aa12.76□□□□□ -0.37
VPS39-214ENST00000614932 EFCAB6Q5THR3 1501 aa12.76□□□□□ -0.37
VPS39-214ENST00000614932 PLIN1O60240 522 aa12.76□□□□□ -0.37
VPS39-214ENST00000614932 RNF17Q9BXT8 1623 aaKnown RBP12.76□□□□□ -0.37
VPS39-214ENST00000614932 FRMPD1Q5SYB0 1578 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 HAP1P54257 671 aaPredicted RBP12.75□□□□□ -0.37
VPS39-214ENST00000614932 HOMEZQ8IX15 550 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 MMP14P50281 582 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 FBXO31Q5XUX0 539 aaPredicted RBP12.75□□□□□ -0.37
VPS39-214ENST00000614932 MROH2AA6NES4 1674 aa12.75□□□□□ -0.37
VPS39-214ENST00000614932 WDR43Q15061 677 aaKnown RBP eCLIP12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms