RNA–Protein interactions for RNA: ENST00000613547.4

MDC1-209, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 5 BASIC

Gene MDC1, Length 830 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-209ENST00000613547 XIRP1Q702N8 1843 aaKnown RBP18.84■□□□□ 0.61
MDC1-209ENST00000613547 GPRASP1Q5JY77 1395 aa18.83■□□□□ 0.61
MDC1-209ENST00000613547 EIF3AQ14152 1382 aaKnown RBP18.82■□□□□ 0.6
MDC1-209ENST00000613547 PLEKHH1Q9ULM0 1364 aa18.82■□□□□ 0.6
MDC1-209ENST00000613547 SCAF1Q9H7N4 1312 aaKnown RBP18.82■□□□□ 0.6
MDC1-209ENST00000613547 SAFB2Q14151 953 aaKnown RBP eCLIP18.82■□□□□ 0.6
MDC1-209ENST00000613547 PIP4K2BP78356 416 aa18.8■□□□□ 0.6
MDC1-209ENST00000613547 SLAIN2Q9P270 581 aa18.79■□□□□ 0.6
MDC1-209ENST00000613547 CENPJQ9HC77 1338 aaPredicted RBP18.78■□□□□ 0.6
MDC1-209ENST00000613547 NALCNQ8IZF0 1738 aa18.78■□□□□ 0.6
MDC1-209ENST00000613547 SIPA1L2Q9P2F8 1722 aaPredicted RBP18.78■□□□□ 0.6
MDC1-209ENST00000613547 CDC42BPGQ6DT37 1551 aa18.77■□□□□ 0.6
MDC1-209ENST00000613547 MINK1Q8N4C8 1332 aaPredicted RBP18.76■□□□□ 0.59
MDC1-209ENST00000613547 ARHGEF28Q8N1W1 1705 aaKnown RBP18.76■□□□□ 0.59
MDC1-209ENST00000613547 MST1RQ04912 1400 aa18.74■□□□□ 0.59
MDC1-209ENST00000613547 HIRIP3Q9BW71 556 aaPredicted RBP18.73■□□□□ 0.59
MDC1-209ENST00000613547 ADGRB2O60241 1585 aa18.72■□□□□ 0.59
MDC1-209ENST00000613547 WASLO00401 505 aaPredicted RBP18.71■□□□□ 0.59
MDC1-209ENST00000613547 C1orf167Q5SNV9 1468 aa18.7■□□□□ 0.58
MDC1-209ENST00000613547 NUTM2FA1L443 756 aa18.69■□□□□ 0.58
MDC1-209ENST00000613547 USP47Q96K76 1375 aa18.68■□□□□ 0.58
MDC1-209ENST00000613547 ANKARQ7Z5J8 1434 aa18.68■□□□□ 0.58
MDC1-209ENST00000613547 SLC24A1O60721 1099 aa18.68■□□□□ 0.58
MDC1-209ENST00000613547 BRINP3Q76B58 766 aa18.68■□□□□ 0.58
MDC1-209ENST00000613547 ILDR1Q86SU0 546 aaPredicted RBP18.68■□□□□ 0.58
MDC1-209ENST00000613547 ESCO1Q5FWF5 840 aa18.67■□□□□ 0.58
MDC1-209ENST00000613547 EVC2Q86UK5 1308 aa18.67■□□□□ 0.58
MDC1-209ENST00000613547 SBNO2Q9Y2G9 1366 aa18.67■□□□□ 0.58
MDC1-209ENST00000613547 QRICH2Q9H0J4 1663 aa18.66■□□□□ 0.58
MDC1-209ENST00000613547 FMN2Q9NZ56 1722 aa18.66■□□□□ 0.58
MDC1-209ENST00000613547 CDK19Q9BWU1 502 aa18.66■□□□□ 0.58
MDC1-209ENST00000613547 ROBO1Q9Y6N7 1651 aa18.66■□□□□ 0.58
MDC1-209ENST00000613547 ST20-MTHFSA0A0A6YYL1 179 aa18.65■□□□□ 0.58
MDC1-209ENST00000613547 SRPK2P78362 688 aaKnown RBP18.65■□□□□ 0.58
MDC1-209ENST00000613547 ORAI2Q96SN7 254 aa18.65■□□□□ 0.58
MDC1-209ENST00000613547 TULP4Q9NRJ4 1543 aa18.64■□□□□ 0.58
MDC1-209ENST00000613547 EIF4G2P78344 907 aaKnown RBP eCLIP18.63■□□□□ 0.57
MDC1-209ENST00000613547 HSPA1LP34931 641 aa18.62■□□□□ 0.57
MDC1-209ENST00000613547 NUDT16Q96DE0 195 aaKnown RBP18.61■□□□□ 0.57
MDC1-209ENST00000613547 NPHP3Q7Z494 1330 aa18.6■□□□□ 0.57
MDC1-209ENST00000613547 PHF8Q9UPP1 1060 aa18.6■□□□□ 0.57
MDC1-209ENST00000613547 ATP7BP35670 1465 aa18.59■□□□□ 0.57
MDC1-209ENST00000613547 PRR36Q9H6K5 1346 aa18.59■□□□□ 0.57
MDC1-209ENST00000613547 ZEB1P37275 1124 aaPredicted RBP18.59■□□□□ 0.57
MDC1-209ENST00000613547 CABP2Q9NPB3 220 aa18.59■□□□□ 0.57
MDC1-209ENST00000613547 CCDC61Q9Y6R9 512 aa18.59■□□□□ 0.57
MDC1-209ENST00000613547 TMF1P82094 1093 aa18.58■□□□□ 0.56
MDC1-209ENST00000613547 TESK2Q96S53 571 aa18.58■□□□□ 0.56
MDC1-209ENST00000613547 AHDC1Q5TGY3 1603 aaPredicted RBP18.58■□□□□ 0.56
MDC1-209ENST00000613547 FOXO3O43524 673 aa18.57■□□□□ 0.56
MDC1-209ENST00000613547 KIF1AQ12756 1690 aa18.57■□□□□ 0.56
MDC1-209ENST00000613547 ATAD2Q6PL18 1390 aa18.56■□□□□ 0.56
MDC1-209ENST00000613547 CDCA8Q53HL2 280 aa18.56■□□□□ 0.56
MDC1-209ENST00000613547 NGDNQ8NEJ9 315 aaKnown RBP18.56■□□□□ 0.56
MDC1-209ENST00000613547 PMFBP1Q8TBY8 1022 aa18.56■□□□□ 0.56
MDC1-209ENST00000613547 USP32Q8NFA0 1604 aa18.56■□□□□ 0.56
MDC1-209ENST00000613547 HSPA5P11021 654 aaKnown RBP18.55■□□□□ 0.56
MDC1-209ENST00000613547 PUS7Q96PZ0 661 aaKnown RBP18.55■□□□□ 0.56
MDC1-209ENST00000613547 PSME1Q06323 249 aa18.54■□□□□ 0.56
MDC1-209ENST00000613547 DDX17Q92841 729 aaKnown RBP18.54■□□□□ 0.56
MDC1-209ENST00000613547 PHLPP1O60346 1717 aa18.54■□□□□ 0.56
MDC1-209ENST00000613547 NHSL1Q5SYE7 1610 aa18.53■□□□□ 0.56
MDC1-209ENST00000613547 PPIP5K1Q6PFW1 1433 aa18.53■□□□□ 0.56
MDC1-209ENST00000613547 LRRC59Q96AG4 307 aaKnown RBP18.53■□□□□ 0.56
MDC1-209ENST00000613547 SOS2Q07890 1332 aaPredicted RBP18.52■□□□□ 0.56
MDC1-209ENST00000613547 ITSN1Q15811 1721 aa18.52■□□□□ 0.56
MDC1-209ENST00000613547 PLEKHG3A1L390 1219 aa18.52■□□□□ 0.56
MDC1-209ENST00000613547 KRT28Q7Z3Y7 464 aa18.51■□□□□ 0.55
MDC1-209ENST00000613547 COL16A1Q07092 1604 aaPredicted RBP18.5■□□□□ 0.55
MDC1-209ENST00000613547 XPCQ01831 940 aaPredicted RBP18.5■□□□□ 0.55
MDC1-209ENST00000613547 CABP1Q9NZU7 370 aa18.5■□□□□ 0.55
MDC1-209ENST00000613547 JCADQ9P266 1359 aa18.5■□□□□ 0.55
MDC1-209ENST00000613547 DISP3Q9P2K9 1392 aa18.5■□□□□ 0.55
MDC1-209ENST00000613547 ACEP12821 1306 aa18.49■□□□□ 0.55
MDC1-209ENST00000613547 POLR3AO14802 1390 aaPredicted RBP18.49■□□□□ 0.55
MDC1-209ENST00000613547 PXDNQ92626 1479 aa18.49■□□□□ 0.55
MDC1-209ENST00000613547 TOPAZ1Q8N9V7 1692 aa18.49■□□□□ 0.55
MDC1-209ENST00000613547 NINLQ9Y2I6 1382 aa18.48■□□□□ 0.55
MDC1-209ENST00000613547 TMC1Q8TDI8 760 aa18.48■□□□□ 0.55
MDC1-209ENST00000613547 RGPD8O14715 1765 aaPredicted RBP18.47■□□□□ 0.55
MDC1-209ENST00000613547 SBNO1A3KN83 1393 aa18.45■□□□□ 0.54
MDC1-209ENST00000613547 ZNF692Q9BU19 519 aaPredicted RBP18.45■□□□□ 0.54
MDC1-209ENST00000613547 BRD4O60885 1362 aaPredicted RBP18.44■□□□□ 0.54
MDC1-209ENST00000613547 HDGFL2Q7Z4V5 671 aaPredicted RBP18.44■□□□□ 0.54
MDC1-209ENST00000613547 TERF2IPQ9NYB0 399 aa18.44■□□□□ 0.54
MDC1-209ENST00000613547 SPATA31A3Q5VYP0 1347 aa18.44■□□□□ 0.54
MDC1-209ENST00000613547 ARHGEF10O15013 1369 aa18.43■□□□□ 0.54
MDC1-209ENST00000613547 TNS3Q68CZ2 1445 aa18.43■□□□□ 0.54
MDC1-209ENST00000613547 PAK3O75914 559 aaPredicted RBP18.43■□□□□ 0.54
MDC1-209ENST00000613547 LMOD2Q6P5Q4 547 aa18.43■□□□□ 0.54
MDC1-209ENST00000613547 SPATA31A6Q5VVP1 1343 aa18.43■□□□□ 0.54
MDC1-209ENST00000613547 PNPLA6Q8IY17 1366 aa18.42■□□□□ 0.54
MDC1-209ENST00000613547 POLR3GLQ9BT43 218 aa18.42■□□□□ 0.54
MDC1-209ENST00000613547 SLC12A5Q9H2X9 1139 aa18.42■□□□□ 0.54
MDC1-209ENST00000613547 USP6P35125 1406 aa18.41■□□□□ 0.54
MDC1-209ENST00000613547 KTN1Q86UP2 1357 aaKnown RBP18.41■□□□□ 0.54
MDC1-209ENST00000613547 CPSF1Q10570 1443 aaKnown RBP18.4■□□□□ 0.54
MDC1-209ENST00000613547 SHPRHQ149N8 1683 aa18.39■□□□□ 0.53
MDC1-209ENST00000613547 HAP1P54257 671 aaPredicted RBP18.37■□□□□ 0.53
MDC1-209ENST00000613547 ANKRD36BQ8N2N9 1353 aa18.37■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms