RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 TMEM132EQ6IEE7 984 aa19.56■□□□□ 0.72
RPS28-204ENST00000602140 WAPLQ7Z5K2 1190 aa19.56■□□□□ 0.72
RPS28-204ENST00000602140 ESCO1Q5FWF5 840 aa19.55■□□□□ 0.72
RPS28-204ENST00000602140 CDC42BPGQ6DT37 1551 aa19.55■□□□□ 0.72
RPS28-204ENST00000602140 LRPPRCP42704 1394 aaKnown RBP19.55■□□□□ 0.72
RPS28-204ENST00000602140 TECPR2O15040 1411 aa19.54■□□□□ 0.72
RPS28-204ENST00000602140 PIK3C2GO75747 1445 aa19.54■□□□□ 0.72
RPS28-204ENST00000602140 NGLY1Q96IV0 654 aa19.54■□□□□ 0.72
RPS28-204ENST00000602140 QTRT2Q9H974 415 aaKnown RBP19.54■□□□□ 0.72
RPS28-204ENST00000602140 CDK12Q9NYV4 1490 aaPredicted RBP19.54■□□□□ 0.72
RPS28-204ENST00000602140 ACIN1Q9UKV3 1341 aaKnown RBP19.53■□□□□ 0.72
RPS28-204ENST00000602140 UPF1Q92900 1129 aaKnown RBP eCLIP19.53■□□□□ 0.72
RPS28-204ENST00000602140 ABCC11Q96J66 1382 aa19.53■□□□□ 0.72
RPS28-204ENST00000602140 NUTM2FA1L443 756 aa19.52■□□□□ 0.72
RPS28-204ENST00000602140 NPHP3Q7Z494 1330 aa19.51■□□□□ 0.71
RPS28-204ENST00000602140 PLEKHH1Q9ULM0 1364 aa19.51■□□□□ 0.71
RPS28-204ENST00000602140 FOXO3O43524 673 aa19.5■□□□□ 0.71
RPS28-204ENST00000602140 RBM6P78332 1123 aaKnown RBP19.5■□□□□ 0.71
RPS28-204ENST00000602140 YTHDC2Q9H6S0 1430 aaKnown RBP19.5■□□□□ 0.71
RPS28-204ENST00000602140 KNDC1Q76NI1 1749 aa19.49■□□□□ 0.71
RPS28-204ENST00000602140 XPCQ01831 940 aaPredicted RBP19.49■□□□□ 0.71
RPS28-204ENST00000602140 C14orf93Q9H972 538 aaKnown RBP19.48■□□□□ 0.71
RPS28-204ENST00000602140 PXDNQ92626 1479 aa19.48■□□□□ 0.71
RPS28-204ENST00000602140 RAB3GAP2Q9H2M9 1393 aa19.47■□□□□ 0.71
RPS28-204ENST00000602140 COL22A1Q8NFW1 1626 aaPredicted RBP19.47■□□□□ 0.71
RPS28-204ENST00000602140 RGS12O14924 1447 aa19.46■□□□□ 0.71
RPS28-204ENST00000602140 CFAP70Q5T0N1 1121 aa19.46■□□□□ 0.71
RPS28-204ENST00000602140 USP21Q9UK80 565 aa19.46■□□□□ 0.71
RPS28-204ENST00000602140 NRXN1Q9ULB1 1477 aa19.45■□□□□ 0.7
RPS28-204ENST00000602140 MYOM2P54296 1465 aa19.44■□□□□ 0.7
RPS28-204ENST00000602140 FNBP4Q8N3X1 1017 aaPredicted RBP19.44■□□□□ 0.7
RPS28-204ENST00000602140 SIRT1Q96EB6 747 aa19.44■□□□□ 0.7
RPS28-204ENST00000602140 DHX57Q6P158 1386 aaKnown RBP19.44■□□□□ 0.7
RPS28-204ENST00000602140 FMN2Q9NZ56 1722 aa19.43■□□□□ 0.7
RPS28-204ENST00000602140 TRPC5Q9UL62 973 aaPredicted RBP19.42■□□□□ 0.7
RPS28-204ENST00000602140 SAFB2Q14151 953 aaKnown RBP eCLIP19.39■□□□□ 0.69
RPS28-204ENST00000602140 PRAM1Q96QH2 718 aa19.39■□□□□ 0.69
RPS28-204ENST00000602140 KIF1AQ12756 1690 aa19.39■□□□□ 0.69
RPS28-204ENST00000602140 ATRNO75882 1429 aa19.38■□□□□ 0.69
RPS28-204ENST00000602140 SPATA31A3Q5VYP0 1347 aa19.38■□□□□ 0.69
RPS28-204ENST00000602140 KRT28Q7Z3Y7 464 aa19.38■□□□□ 0.69
RPS28-204ENST00000602140 PHF8Q9UPP1 1060 aa19.37■□□□□ 0.69
RPS28-204ENST00000602140 BCL9LQ86UU0 1499 aa19.36■□□□□ 0.69
RPS28-204ENST00000602140 POGKQ9P215 609 aa19.36■□□□□ 0.69
RPS28-204ENST00000602140 MARF1Q9Y4F3 1742 aaKnown RBP19.36■□□□□ 0.69
RPS28-204ENST00000602140 RGPD8O14715 1765 aaPredicted RBP19.34■□□□□ 0.69
RPS28-204ENST00000602140 KDM2AQ9Y2K7 1162 aa19.34■□□□□ 0.69
RPS28-204ENST00000602140 PSME1Q06323 249 aa19.33■□□□□ 0.68
RPS28-204ENST00000602140 DCAF11Q8TEB1 546 aa19.33■□□□□ 0.68
RPS28-204ENST00000602140 DLC1Q96QB1 1528 aa19.33■□□□□ 0.68
RPS28-204ENST00000602140 ATAD2Q6PL18 1390 aa19.32■□□□□ 0.68
RPS28-204ENST00000602140 ADGRB1O14514 1584 aa19.32■□□□□ 0.68
RPS28-204ENST00000602140 TRAK1Q9UPV9 953 aa19.32■□□□□ 0.68
RPS28-204ENST00000602140 GJD4Q96KN9 370 aaPredicted RBP19.31■□□□□ 0.68
RPS28-204ENST00000602140 TNS3Q68CZ2 1445 aa19.31■□□□□ 0.68
RPS28-204ENST00000602140 PLEKHG5O94827 1062 aa19.3■□□□□ 0.68
RPS28-204ENST00000602140 HAP1P54257 671 aaPredicted RBP19.3■□□□□ 0.68
RPS28-204ENST00000602140 PMFBP1Q8TBY8 1022 aa19.3■□□□□ 0.68
RPS28-204ENST00000602140 HRCP23327 699 aa19.29■□□□□ 0.68
RPS28-204ENST00000602140 LMOD2Q6P5Q4 547 aa19.29■□□□□ 0.68
RPS28-204ENST00000602140 UNC5CLQ8IV45 518 aa19.29■□□□□ 0.68
RPS28-204ENST00000602140 CABLES1Q8TDN4 633 aa19.29■□□□□ 0.68
RPS28-204ENST00000602140 HIRIP3Q9BW71 556 aaPredicted RBP19.29■□□□□ 0.68
RPS28-204ENST00000602140 SLIT2O94813 1529 aa19.29■□□□□ 0.68
RPS28-204ENST00000602140 ANKARQ7Z5J8 1434 aa19.28■□□□□ 0.68
RPS28-204ENST00000602140 SBNO1A3KN83 1393 aa19.28■□□□□ 0.68
RPS28-204ENST00000602140 USP32Q8NFA0 1604 aa19.28■□□□□ 0.68
RPS28-204ENST00000602140 ADGRB2O60241 1585 aa19.27■□□□□ 0.68
RPS28-204ENST00000602140 MINK1Q8N4C8 1332 aaPredicted RBP19.27■□□□□ 0.68
RPS28-204ENST00000602140 STAC3Q96MF2 364 aa19.27■□□□□ 0.68
RPS28-204ENST00000602140 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.26■□□□□ 0.67
RPS28-204ENST00000602140 ARHGEF10O15013 1369 aa19.25■□□□□ 0.67
RPS28-204ENST00000602140 RALGAPBQ86X10 1494 aa19.24■□□□□ 0.67
RPS28-204ENST00000602140 EP400Q96L91 3159 aa19.24■□□□□ 0.67
RPS28-204ENST00000602140 WASLO00401 505 aaPredicted RBP19.23■□□□□ 0.67
RPS28-204ENST00000602140 GLI3P10071 1580 aa19.23■□□□□ 0.67
RPS28-204ENST00000602140 PRR36Q9H6K5 1346 aa19.23■□□□□ 0.67
RPS28-204ENST00000602140 EIF3AQ14152 1382 aaKnown RBP19.22■□□□□ 0.67
RPS28-204ENST00000602140 TULP4Q9NRJ4 1543 aa19.21■□□□□ 0.67
RPS28-204ENST00000602140 GPRASP1Q5JY77 1395 aa19.2■□□□□ 0.66
RPS28-204ENST00000602140 ABCA3Q99758 1704 aa19.2■□□□□ 0.66
RPS28-204ENST00000602140 VPS72Q15906 364 aa19.19■□□□□ 0.66
RPS28-204ENST00000602140 CCDC9Q9Y3X0 531 aaKnown RBP19.19■□□□□ 0.66
RPS28-204ENST00000602140 TRPM3Q9HCF6 1732 aaPredicted RBP19.19■□□□□ 0.66
RPS28-204ENST00000602140 PLCH1Q4KWH8 1693 aa19.18■□□□□ 0.66
RPS28-204ENST00000602140 FAM83GA6ND36 823 aa19.18■□□□□ 0.66
RPS28-204ENST00000602140 CCDC125Q86Z20 511 aa19.18■□□□□ 0.66
RPS28-204ENST00000602140 NGDNQ8NEJ9 315 aaKnown RBP19.18■□□□□ 0.66
RPS28-204ENST00000602140 ARHGEF28Q8N1W1 1705 aaKnown RBP19.17■□□□□ 0.66
RPS28-204ENST00000602140 NWD2Q9ULI1 1742 aa19.17■□□□□ 0.66
RPS28-204ENST00000602140 SEPT12Q8IYM1 358 aa19.16■□□□□ 0.66
RPS28-204ENST00000602140 ALS2Q96Q42 1657 aa19.15■□□□□ 0.66
RPS28-204ENST00000602140 PAK3O75914 559 aaPredicted RBP19.15■□□□□ 0.66
RPS28-204ENST00000602140 NUDT16Q96DE0 195 aaKnown RBP19.14■□□□□ 0.65
RPS28-204ENST00000602140 ONECUT3O60422 494 aaPredicted RBP19.13■□□□□ 0.65
RPS28-204ENST00000602140 BTG4Q9NY30 223 aa19.13■□□□□ 0.65
RPS28-204ENST00000602140 ATP7BP35670 1465 aa19.13■□□□□ 0.65
RPS28-204ENST00000602140 BRWD3Q6RI45 1802 aa19.13■□□□□ 0.65
RPS28-204ENST00000602140 CDK19Q9BWU1 502 aa19.12■□□□□ 0.65
RPS28-204ENST00000602140 ZRANB1Q9UGI0 708 aa19.12■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms