RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 USP21Q9UK80 565 aa13.16□□□□□ -0.3
SHKBP1-220ENST00000599716 PNPLA6Q8IY17 1366 aa13.16□□□□□ -0.3
SHKBP1-220ENST00000599716 KIF1BO60333 1816 aa13.16□□□□□ -0.3
SHKBP1-220ENST00000599716 ATRNO75882 1429 aa13.15□□□□□ -0.3
SHKBP1-220ENST00000599716 DEFB132Q7Z7B7 95 aa13.15□□□□□ -0.3
SHKBP1-220ENST00000599716 ORAI2Q96SN7 254 aa13.15□□□□□ -0.3
SHKBP1-220ENST00000599716 ROBO2Q9HCK4 1378 aa13.15□□□□□ -0.3
SHKBP1-220ENST00000599716 NAIPQ13075 1403 aa13.14□□□□□ -0.31
SHKBP1-220ENST00000599716 SENP3-EIF4A1A0A087X0R7 540 aa13.14□□□□□ -0.31
SHKBP1-220ENST00000599716 C1orf167Q5SNV9 1468 aa13.13□□□□□ -0.31
SHKBP1-220ENST00000599716 PSDA5PKW4 1024 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-220ENST00000599716 FNBP4Q8N3X1 1017 aaPredicted RBP13.13□□□□□ -0.31
SHKBP1-220ENST00000599716 SF3B2Q13435 895 aaKnown RBP13.12□□□□□ -0.31
SHKBP1-220ENST00000599716 RRBP1Q9P2E9 1410 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-220ENST00000599716 NUTM2FA1L443 756 aa13.09□□□□□ -0.31
SHKBP1-220ENST00000599716 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-220ENST00000599716 PTCH1Q13635 1447 aa13.08□□□□□ -0.32
SHKBP1-220ENST00000599716 PPLO60437 1756 aa13.08□□□□□ -0.32
SHKBP1-220ENST00000599716 SLC4A1APQ9BWU0 796 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-220ENST00000599716 VGFO15240 615 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-220ENST00000599716 STK26Q9P289 416 aa13.06□□□□□ -0.32
SHKBP1-220ENST00000599716 SOS2Q07890 1332 aaPredicted RBP13.06□□□□□ -0.32
SHKBP1-220ENST00000599716 ADGRF5Q8IZF2 1346 aa13.06□□□□□ -0.32
SHKBP1-220ENST00000599716 LAMC1P11047 1609 aa13.06□□□□□ -0.32
SHKBP1-220ENST00000599716 RGL3Q3MIN7 710 aa13.05□□□□□ -0.32
SHKBP1-220ENST00000599716 WAPLQ7Z5K2 1190 aa13.05□□□□□ -0.32
SHKBP1-220ENST00000599716 ESCO1Q5FWF5 840 aa13.04□□□□□ -0.32
SHKBP1-220ENST00000599716 GJD4Q96KN9 370 aaPredicted RBP13.04□□□□□ -0.32
SHKBP1-220ENST00000599716 HFM1A2PYH4 1435 aa13.04□□□□□ -0.32
SHKBP1-220ENST00000599716 PLEKHG5O94827 1062 aa13.03□□□□□ -0.32
SHKBP1-220ENST00000599716 TMEM132EQ6IEE7 984 aa13.03□□□□□ -0.32
SHKBP1-220ENST00000599716 PLEKHH1Q9ULM0 1364 aa13.03□□□□□ -0.32
SHKBP1-220ENST00000599716 DCAF8L1A6NGE4 600 aa13.02□□□□□ -0.33
SHKBP1-220ENST00000599716 FOXO3O43524 673 aa13.02□□□□□ -0.33
SHKBP1-220ENST00000599716 C1QTNF8P60827 252 aa13.01□□□□□ -0.33
SHKBP1-220ENST00000599716 ZNF784Q8NCA9 323 aaPredicted RBP13.01□□□□□ -0.33
SHKBP1-220ENST00000599716 PXDNQ92626 1479 aa13.01□□□□□ -0.33
SHKBP1-220ENST00000599716 COL22A1Q8NFW1 1626 aaPredicted RBP13□□□□□ -0.33
SHKBP1-220ENST00000599716 CDC42BPGQ6DT37 1551 aa13□□□□□ -0.33
SHKBP1-220ENST00000599716 MYOM2P54296 1465 aa13□□□□□ -0.33
SHKBP1-220ENST00000599716 RPGRIP1LQ68CZ1 1315 aa13□□□□□ -0.33
SHKBP1-220ENST00000599716 BAG6P46379 1132 aa13□□□□□ -0.33
SHKBP1-220ENST00000599716 R3HDM1Q15032 1099 aaKnown RBP13□□□□□ -0.33
SHKBP1-220ENST00000599716 PRAG1Q86YV5 1406 aa12.99□□□□□ -0.33
SHKBP1-220ENST00000599716 IFT172Q9UG01 1749 aa12.98□□□□□ -0.33
SHKBP1-220ENST00000599716 CCDC144AA2RUR9 1427 aa12.97□□□□□ -0.33
SHKBP1-220ENST00000599716 MARF1Q9Y4F3 1742 aaKnown RBP12.97□□□□□ -0.33
SHKBP1-220ENST00000599716 NPHP3Q7Z494 1330 aa12.97□□□□□ -0.33
SHKBP1-220ENST00000599716 RALGAPBQ86X10 1494 aa12.97□□□□□ -0.33
SHKBP1-220ENST00000599716 RGPD8O14715 1765 aaPredicted RBP12.97□□□□□ -0.33
SHKBP1-220ENST00000599716 SPATA31E1Q6ZUB1 1445 aa12.96□□□□□ -0.33
SHKBP1-220ENST00000599716 LRPPRCP42704 1394 aaKnown RBP12.95□□□□□ -0.34
SHKBP1-220ENST00000599716 SAFB2Q14151 953 aaKnown RBP eCLIP12.95□□□□□ -0.34
SHKBP1-220ENST00000599716 CABLES1Q8TDN4 633 aa12.95□□□□□ -0.34
SHKBP1-220ENST00000599716 MPHOSPH9Q99550 1183 aa12.95□□□□□ -0.34
SHKBP1-220ENST00000599716 FMN2Q9NZ56 1722 aa12.95□□□□□ -0.34
SHKBP1-220ENST00000599716 NINLQ9Y2I6 1382 aa12.94□□□□□ -0.34
SHKBP1-220ENST00000599716 KNDC1Q76NI1 1749 aa12.93□□□□□ -0.34
SHKBP1-220ENST00000599716 TECPR2O15040 1411 aa12.93□□□□□ -0.34
SHKBP1-220ENST00000599716 PIK3C2GO75747 1445 aa12.93□□□□□ -0.34
SHKBP1-220ENST00000599716 YTHDC2Q9H6S0 1430 aaKnown RBP12.93□□□□□ -0.34
SHKBP1-220ENST00000599716 GLI3P10071 1580 aa12.93□□□□□ -0.34
SHKBP1-220ENST00000599716 CFAP70Q5T0N1 1121 aa12.92□□□□□ -0.34
SHKBP1-220ENST00000599716 SEPT12Q8IYM1 358 aa12.92□□□□□ -0.34
SHKBP1-220ENST00000599716 BRWD3Q6RI45 1802 aa12.92□□□□□ -0.34
SHKBP1-220ENST00000599716 ABCC11Q96J66 1382 aa12.92□□□□□ -0.34
SHKBP1-220ENST00000599716 SPATA31A3Q5VYP0 1347 aa12.91□□□□□ -0.34
SHKBP1-220ENST00000599716 KRT28Q7Z3Y7 464 aa12.91□□□□□ -0.34
SHKBP1-220ENST00000599716 ANKRD30BQ9BXX2 1392 aa12.91□□□□□ -0.34
SHKBP1-220ENST00000599716 DISP2A7MBM2 1401 aa12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 EN1Q05925 392 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 LMOD2Q6P5Q4 547 aa12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 KRT27Q7Z3Y8 459 aa12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 UNC5CLQ8IV45 518 aa12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 USP32Q8NFA0 1604 aa12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.9□□□□□ -0.34
SHKBP1-220ENST00000599716 SLIT2O94813 1529 aa12.89□□□□□ -0.35
SHKBP1-220ENST00000599716 KIF1AQ12756 1690 aa12.89□□□□□ -0.35
SHKBP1-220ENST00000599716 HAP1P54257 671 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 PMFBP1Q8TBY8 1022 aa12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 PRAM1Q96QH2 718 aa12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 PPP1R1BQ9UD71 204 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 PHF8Q9UPP1 1060 aa12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 ABCA3Q99758 1704 aa12.88□□□□□ -0.35
SHKBP1-220ENST00000599716 GOLGB1Q14789 3259 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 PLCH1Q4KWH8 1693 aa12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 HIRIP3Q9BW71 556 aaPredicted RBP12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 C14orf93Q9H972 538 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 CCDC9Q9Y3X0 531 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 TNS3Q68CZ2 1445 aa12.87□□□□□ -0.35
SHKBP1-220ENST00000599716 ONECUT3O60422 494 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-220ENST00000599716 NRXN1Q9ULB1 1477 aa12.84□□□□□ -0.35
SHKBP1-220ENST00000599716 DHX57Q6P158 1386 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 FAM83GA6ND36 823 aa12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 PSME1Q06323 249 aa12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 SPON1Q9HCB6 807 aa12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 POGKQ9P215 609 aa12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 TRAK1Q9UPV9 953 aa12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 MINK1Q8N4C8 1332 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-220ENST00000599716 A0A0G2JS52 829 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms