RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 HFM1A2PYH4 1435 aa24.85■■□□□ 1.57
SHKBP1-215ENST00000597649 ESCO1Q5FWF5 840 aa24.84■■□□□ 1.57
SHKBP1-215ENST00000597649 FOXD1Q16676 465 aa24.83■■□□□ 1.57
SHKBP1-215ENST00000597649 ATRNO75882 1429 aa24.81■■□□□ 1.56
SHKBP1-215ENST00000597649 XPCQ01831 940 aaPredicted RBP24.81■■□□□ 1.56
SHKBP1-215ENST00000597649 ADGRF5Q8IZF2 1346 aa24.81■■□□□ 1.56
SHKBP1-215ENST00000597649 ATAD2Q6PL18 1390 aa24.8■■□□□ 1.56
SHKBP1-215ENST00000597649 FOXO3O43524 673 aa24.8■■□□□ 1.56
SHKBP1-215ENST00000597649 WAPLQ7Z5K2 1190 aa24.8■■□□□ 1.56
SHKBP1-215ENST00000597649 MYOM2P54296 1465 aa24.79■■□□□ 1.56
SHKBP1-215ENST00000597649 NPHP3Q7Z494 1330 aa24.79■■□□□ 1.56
SHKBP1-215ENST00000597649 BCL9LQ86UU0 1499 aa24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 PXDNQ92626 1479 aa24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 COL22A1Q8NFW1 1626 aaPredicted RBP24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 NUTM2FA1L443 756 aa24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 STK26Q9P289 416 aa24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 PPLO60437 1756 aa24.77■■□□□ 1.56
SHKBP1-215ENST00000597649 RGL3Q3MIN7 710 aa24.75■■□□□ 1.55
SHKBP1-215ENST00000597649 TMEM132EQ6IEE7 984 aa24.74■■□□□ 1.55
SHKBP1-215ENST00000597649 CDC42BPGQ6DT37 1551 aa24.73■■□□□ 1.55
SHKBP1-215ENST00000597649 PLEKHH1Q9ULM0 1364 aa24.72■■□□□ 1.55
SHKBP1-215ENST00000597649 GJD4Q96KN9 370 aaPredicted RBP24.71■■□□□ 1.55
SHKBP1-215ENST00000597649 LRPPRCP42704 1394 aaKnown RBP24.7■■□□□ 1.55
SHKBP1-215ENST00000597649 TECPR2O15040 1411 aa24.69■■□□□ 1.54
SHKBP1-215ENST00000597649 SPATA31E1Q6ZUB1 1445 aa24.69■■□□□ 1.54
SHKBP1-215ENST00000597649 ABCC11Q96J66 1382 aa24.69■■□□□ 1.54
SHKBP1-215ENST00000597649 SPATA31A3Q5VYP0 1347 aa24.65■■□□□ 1.54
SHKBP1-215ENST00000597649 CCDC144AA2RUR9 1427 aa24.65■■□□□ 1.54
SHKBP1-215ENST00000597649 ZRANB1Q9UGI0 708 aa24.65■■□□□ 1.54
SHKBP1-215ENST00000597649 ANKRD30BQ9BXX2 1392 aa24.65■■□□□ 1.54
SHKBP1-215ENST00000597649 CCDC125Q86Z20 511 aa24.64■■□□□ 1.54
SHKBP1-215ENST00000597649 UNC5CLQ8IV45 518 aa24.64■■□□□ 1.54
SHKBP1-215ENST00000597649 MPHOSPH9Q99550 1183 aa24.64■■□□□ 1.54
SHKBP1-215ENST00000597649 KRT28Q7Z3Y7 464 aa24.63■■□□□ 1.53
SHKBP1-215ENST00000597649 SLIT2O94813 1529 aa24.61■■□□□ 1.53
SHKBP1-215ENST00000597649 PIK3C2GO75747 1445 aa24.61■■□□□ 1.53
SHKBP1-215ENST00000597649 MARF1Q9Y4F3 1742 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-215ENST00000597649 YTHDC2Q9H6S0 1430 aaKnown RBP24.6■■□□□ 1.53
SHKBP1-215ENST00000597649 RALGAPBQ86X10 1494 aa24.59■■□□□ 1.53
SHKBP1-215ENST00000597649 SIRT1Q96EB6 747 aa24.59■■□□□ 1.53
SHKBP1-215ENST00000597649 CABLES1Q8TDN4 633 aa24.58■■□□□ 1.53
SHKBP1-215ENST00000597649 GLI3P10071 1580 aa24.58■■□□□ 1.52
SHKBP1-215ENST00000597649 C14orf93Q9H972 538 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-215ENST00000597649 IFT172Q9UG01 1749 aa24.55■■□□□ 1.52
SHKBP1-215ENST00000597649 CFAP70Q5T0N1 1121 aa24.55■■□□□ 1.52
SHKBP1-215ENST00000597649 PHF8Q9UPP1 1060 aa24.55■■□□□ 1.52
SHKBP1-215ENST00000597649 FMN2Q9NZ56 1722 aa24.55■■□□□ 1.52
SHKBP1-215ENST00000597649 PLEKHG5O94827 1062 aa24.54■■□□□ 1.52
SHKBP1-215ENST00000597649 KNDC1Q76NI1 1749 aa24.53■■□□□ 1.52
SHKBP1-215ENST00000597649 DEFB132Q7Z7B7 95 aa24.53■■□□□ 1.52
SHKBP1-215ENST00000597649 SEPT12Q8IYM1 358 aa24.53■■□□□ 1.52
SHKBP1-215ENST00000597649 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.52■■□□□ 1.52
SHKBP1-215ENST00000597649 SAFB2Q14151 953 aaKnown RBP eCLIP24.51■■□□□ 1.51
SHKBP1-215ENST00000597649 VPS72Q15906 364 aa24.51■■□□□ 1.51
SHKBP1-215ENST00000597649 BLMP54132 1417 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-215ENST00000597649 ONECUT3O60422 494 aaPredicted RBP24.5■■□□□ 1.51
SHKBP1-215ENST00000597649 PSME1Q06323 249 aa24.5■■□□□ 1.51
SHKBP1-215ENST00000597649 TNS3Q68CZ2 1445 aa24.5■■□□□ 1.51
SHKBP1-215ENST00000597649 USP32Q8NFA0 1604 aa24.5■■□□□ 1.51
SHKBP1-215ENST00000597649 KIF1AQ12756 1690 aa24.5■■□□□ 1.51
SHKBP1-215ENST00000597649 PRAM1Q96QH2 718 aa24.49■■□□□ 1.51
SHKBP1-215ENST00000597649 FAM83GA6ND36 823 aa24.48■■□□□ 1.51
SHKBP1-215ENST00000597649 HAP1P54257 671 aaPredicted RBP24.48■■□□□ 1.51
SHKBP1-215ENST00000597649 DHX57Q6P158 1386 aaKnown RBP24.48■■□□□ 1.51
SHKBP1-215ENST00000597649 NRXN1Q9ULB1 1477 aa24.47■■□□□ 1.51
SHKBP1-215ENST00000597649 SBNO1A3KN83 1393 aa24.47■■□□□ 1.51
SHKBP1-215ENST00000597649 LMOD2Q6P5Q4 547 aa24.47■■□□□ 1.51
SHKBP1-215ENST00000597649 RGPD8O14715 1765 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-215ENST00000597649 PMFBP1Q8TBY8 1022 aa24.46■■□□□ 1.51
SHKBP1-215ENST00000597649 BRWD3Q6RI45 1802 aa24.45■■□□□ 1.5
SHKBP1-215ENST00000597649 CCDC9Q9Y3X0 531 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-215ENST00000597649 KRT27Q7Z3Y8 459 aa24.43■■□□□ 1.5
SHKBP1-215ENST00000597649 ARHGEF10O15013 1369 aa24.41■■□□□ 1.5
SHKBP1-215ENST00000597649 POGKQ9P215 609 aa24.4■■□□□ 1.5
SHKBP1-215ENST00000597649 SF3B2Q13435 895 aaKnown RBP24.39■■□□□ 1.49
SHKBP1-215ENST00000597649 HIRIP3Q9BW71 556 aaPredicted RBP24.38■■□□□ 1.49
SHKBP1-215ENST00000597649 PLCH1Q4KWH8 1693 aa24.37■■□□□ 1.49
SHKBP1-215ENST00000597649 ANKARQ7Z5J8 1434 aa24.36■■□□□ 1.49
SHKBP1-215ENST00000597649 FAM98CQ17RN3 349 aaKnown RBP24.36■■□□□ 1.49
SHKBP1-215ENST00000597649 BTG4Q9NY30 223 aa24.36■■□□□ 1.49
SHKBP1-215ENST00000597649 TRAK1Q9UPV9 953 aa24.36■■□□□ 1.49
SHKBP1-215ENST00000597649 PRR36Q9H6K5 1346 aa24.35■■□□□ 1.49
SHKBP1-215ENST00000597649 NWD2Q9ULI1 1742 aa24.35■■□□□ 1.49
SHKBP1-215ENST00000597649 DLC1Q96QB1 1528 aa24.35■■□□□ 1.49
SHKBP1-215ENST00000597649 ABCA3Q99758 1704 aa24.34■■□□□ 1.49
SHKBP1-215ENST00000597649 MINK1Q8N4C8 1332 aaPredicted RBP24.33■■□□□ 1.48
SHKBP1-215ENST00000597649 ADGRB1O14514 1584 aa24.32■■□□□ 1.48
SHKBP1-215ENST00000597649 ACIN1Q9UKV3 1341 aaKnown RBP24.32■■□□□ 1.48
SHKBP1-215ENST00000597649 A0A0G2JS52 829 aa24.31■■□□□ 1.48
SHKBP1-215ENST00000597649 MYT1Q01538 1121 aa24.31■■□□□ 1.48
SHKBP1-215ENST00000597649 PSDA5PKW4 1024 aaPredicted RBP24.3■■□□□ 1.48
SHKBP1-215ENST00000597649 FAM182BQ5T319 152 aa24.3■■□□□ 1.48
SHKBP1-215ENST00000597649 WASLO00401 505 aaPredicted RBP24.29■■□□□ 1.48
SHKBP1-215ENST00000597649 TRPM3Q9HCF6 1732 aaPredicted RBP24.29■■□□□ 1.48
SHKBP1-215ENST00000597649 GPRASP1Q5JY77 1395 aa24.29■■□□□ 1.48
SHKBP1-215ENST00000597649 KDM2AQ9Y2K7 1162 aa24.28■■□□□ 1.48
SHKBP1-215ENST00000597649 SPATA31A5Q5VU36 1347 aa24.28■■□□□ 1.48
SHKBP1-215ENST00000597649 SPATA31A7Q8IWB4 1347 aa24.28■■□□□ 1.48
SHKBP1-215ENST00000597649 ADGRB2O60241 1585 aa24.28■■□□□ 1.48
SHKBP1-215ENST00000597649 BAG6P46379 1132 aa24.27■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms