RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 ZRANB1Q9UGI0 708 aa14.84□□□□□ -0.03
SS18-210ENST00000578700 XPCQ01831 940 aaPredicted RBP14.83□□□□□ -0.04
SS18-210ENST00000578700 SOS2Q07890 1332 aaPredicted RBP14.83□□□□□ -0.04
SS18-210ENST00000578700 NUTM2FA1L443 756 aa14.82□□□□□ -0.04
SS18-210ENST00000578700 FNBP4Q8N3X1 1017 aaPredicted RBP14.82□□□□□ -0.04
SS18-210ENST00000578700 ROBO2Q9HCK4 1378 aa14.82□□□□□ -0.04
SS18-210ENST00000578700 PTCH1Q13635 1447 aa14.81□□□□□ -0.04
SS18-210ENST00000578700 COL22A1Q8NFW1 1626 aaPredicted RBP14.81□□□□□ -0.04
SS18-210ENST00000578700 FOXO3O43524 673 aa14.8□□□□□ -0.04
SS18-210ENST00000578700 CLSPNQ9HAW4 1339 aa14.8□□□□□ -0.04
SS18-210ENST00000578700 MARF1Q9Y4F3 1742 aaKnown RBP14.8□□□□□ -0.04
SS18-210ENST00000578700 STK26Q9P289 416 aa14.79□□□□□ -0.04
SS18-210ENST00000578700 PRAG1Q86YV5 1406 aa14.78□□□□□ -0.04
SS18-210ENST00000578700 RAB3GAP2Q9H2M9 1393 aa14.78□□□□□ -0.04
SS18-210ENST00000578700 ACIN1Q9UKV3 1341 aaKnown RBP14.78□□□□□ -0.04
SS18-210ENST00000578700 PLEKHG5O94827 1062 aa14.78□□□□□ -0.04
SS18-210ENST00000578700 NPHP3Q7Z494 1330 aa14.77□□□□□ -0.04
SS18-210ENST00000578700 GJD4Q96KN9 370 aaPredicted RBP14.77□□□□□ -0.05
SS18-210ENST00000578700 ATRNO75882 1429 aa14.76□□□□□ -0.05
SS18-210ENST00000578700 PPLO60437 1756 aa14.76□□□□□ -0.05
SS18-210ENST00000578700 HFM1A2PYH4 1435 aa14.75□□□□□ -0.05
SS18-210ENST00000578700 WAPLQ7Z5K2 1190 aa14.75□□□□□ -0.05
SS18-210ENST00000578700 CCDC125Q86Z20 511 aa14.75□□□□□ -0.05
SS18-210ENST00000578700 SLC4A1APQ9BWU0 796 aaKnown RBP14.75□□□□□ -0.05
SS18-210ENST00000578700 RPGRIP1LQ68CZ1 1315 aa14.74□□□□□ -0.05
SS18-210ENST00000578700 RGL3Q3MIN7 710 aa14.74□□□□□ -0.05
SS18-210ENST00000578700 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.73□□□□□ -0.05
SS18-210ENST00000578700 HAP1P54257 671 aaPredicted RBP14.73□□□□□ -0.05
SS18-210ENST00000578700 MYOM2P54296 1465 aa14.73□□□□□ -0.05
SS18-210ENST00000578700 CDC42BPGQ6DT37 1551 aa14.73□□□□□ -0.05
SS18-210ENST00000578700 DHX57Q6P158 1386 aaKnown RBP14.73□□□□□ -0.05
SS18-210ENST00000578700 BCL9LQ86UU0 1499 aa14.71□□□□□ -0.05
SS18-210ENST00000578700 TMEM132EQ6IEE7 984 aa14.71□□□□□ -0.05
SS18-210ENST00000578700 DEFB132Q7Z7B7 95 aa14.71□□□□□ -0.05
SS18-210ENST00000578700 UNC5CLQ8IV45 518 aa14.71□□□□□ -0.05
SS18-210ENST00000578700 CCDC9Q9Y3X0 531 aaKnown RBP14.71□□□□□ -0.05
SS18-210ENST00000578700 LRPPRCP42704 1394 aaKnown RBP14.71□□□□□ -0.06
SS18-210ENST00000578700 PXDNQ92626 1479 aa14.7□□□□□ -0.06
SS18-210ENST00000578700 ADGRF5Q8IZF2 1346 aa14.7□□□□□ -0.06
SS18-210ENST00000578700 SF3B2Q13435 895 aaKnown RBP14.7□□□□□ -0.06
SS18-210ENST00000578700 NAIPQ13075 1403 aa14.69□□□□□ -0.06
SS18-210ENST00000578700 LMOD2Q6P5Q4 547 aa14.69□□□□□ -0.06
SS18-210ENST00000578700 KRT28Q7Z3Y7 464 aa14.69□□□□□ -0.06
SS18-210ENST00000578700 SEPT12Q8IYM1 358 aa14.67□□□□□ -0.06
SS18-210ENST00000578700 CABLES1Q8TDN4 633 aa14.67□□□□□ -0.06
SS18-210ENST00000578700 BRWD3Q6RI45 1802 aa14.66□□□□□ -0.06
SS18-210ENST00000578700 PLEKHH1Q9ULM0 1364 aa14.66□□□□□ -0.06
SS18-210ENST00000578700 A0A0G2JS52 829 aa14.66□□□□□ -0.06
SS18-210ENST00000578700 MYT1Q01538 1121 aa14.66□□□□□ -0.06
SS18-210ENST00000578700 SPATA31A3Q5VYP0 1347 aa14.66□□□□□ -0.06
SS18-210ENST00000578700 KNDC1Q76NI1 1749 aa14.65□□□□□ -0.06
SS18-210ENST00000578700 KIF1AQ12756 1690 aa14.65□□□□□ -0.06
SS18-210ENST00000578700 RALGAPBQ86X10 1494 aa14.64□□□□□ -0.07
SS18-210ENST00000578700 IFT172Q9UG01 1749 aa14.64□□□□□ -0.07
SS18-210ENST00000578700 PSME1Q06323 249 aa14.64□□□□□ -0.07
SS18-210ENST00000578700 TECPR2O15040 1411 aa14.64□□□□□ -0.07
SS18-210ENST00000578700 BLMP54132 1417 aaPredicted RBP14.64□□□□□ -0.07
SS18-210ENST00000578700 GLI3P10071 1580 aa14.64□□□□□ -0.07
SS18-210ENST00000578700 FMN2Q9NZ56 1722 aa14.63□□□□□ -0.07
SS18-210ENST00000578700 SAFB2Q14151 953 aaKnown RBP eCLIP14.63□□□□□ -0.07
SS18-210ENST00000578700 SLIT2O94813 1529 aa14.62□□□□□ -0.07
SS18-210ENST00000578700 KRT27Q7Z3Y8 459 aa14.62□□□□□ -0.07
SS18-210ENST00000578700 PHF8Q9UPP1 1060 aa14.62□□□□□ -0.07
SS18-210ENST00000578700 RGPD8O14715 1765 aaPredicted RBP14.62□□□□□ -0.07
SS18-210ENST00000578700 USP32Q8NFA0 1604 aa14.62□□□□□ -0.07
SS18-210ENST00000578700 PSDA5PKW4 1024 aaPredicted RBP14.61□□□□□ -0.07
SS18-210ENST00000578700 VPS72Q15906 364 aa14.61□□□□□ -0.07
SS18-210ENST00000578700 NWD2Q9ULI1 1742 aa14.61□□□□□ -0.07
SS18-210ENST00000578700 ABCC11Q96J66 1382 aa14.6□□□□□ -0.07
SS18-210ENST00000578700 CCDC144AA2RUR9 1427 aa14.6□□□□□ -0.07
SS18-210ENST00000578700 PMFBP1Q8TBY8 1022 aa14.6□□□□□ -0.07
SS18-210ENST00000578700 PLCH1Q4KWH8 1693 aa14.58□□□□□ -0.07
SS18-210ENST00000578700 FAM83GA6ND36 823 aa14.58□□□□□ -0.08
SS18-210ENST00000578700 FAM98CQ17RN3 349 aaKnown RBP14.58□□□□□ -0.08
SS18-210ENST00000578700 MPHOSPH9Q99550 1183 aa14.58□□□□□ -0.08
SS18-210ENST00000578700 ANKRD30BQ9BXX2 1392 aa14.58□□□□□ -0.08
SS18-210ENST00000578700 BAG6P46379 1132 aa14.57□□□□□ -0.08
SS18-210ENST00000578700 CFAP70Q5T0N1 1121 aa14.57□□□□□ -0.08
SS18-210ENST00000578700 ABCA3Q99758 1704 aa14.57□□□□□ -0.08
SS18-210ENST00000578700 YTHDC2Q9H6S0 1430 aaKnown RBP14.57□□□□□ -0.08
SS18-210ENST00000578700 LRP5O75197 1615 aa14.56□□□□□ -0.08
SS18-210ENST00000578700 FAM182BQ5T319 152 aa14.56□□□□□ -0.08
SS18-210ENST00000578700 PRAM1Q96QH2 718 aa14.56□□□□□ -0.08
SS18-210ENST00000578700 POGKQ9P215 609 aa14.56□□□□□ -0.08
SS18-210ENST00000578700 SPATA31E1Q6ZUB1 1445 aa14.56□□□□□ -0.08
SS18-210ENST00000578700 ONECUT3O60422 494 aaPredicted RBP14.55□□□□□ -0.08
SS18-210ENST00000578700 BTG4Q9NY30 223 aa14.55□□□□□ -0.08
SS18-210ENST00000578700 TIMELESSQ9UNS1 1208 aa14.55□□□□□ -0.08
SS18-210ENST00000578700 TNS3Q68CZ2 1445 aa14.55□□□□□ -0.08
SS18-210ENST00000578700 EN1Q05925 392 aaPredicted RBP14.54□□□□□ -0.08
SS18-210ENST00000578700 SIRT1Q96EB6 747 aa14.54□□□□□ -0.08
SS18-210ENST00000578700 C14orf93Q9H972 538 aaKnown RBP14.54□□□□□ -0.08
SS18-210ENST00000578700 PIK3C2GO75747 1445 aa14.54□□□□□ -0.08
SS18-210ENST00000578700 SBNO1A3KN83 1393 aa14.52□□□□□ -0.08
SS18-210ENST00000578700 PIAS4Q8N2W9 510 aaPredicted RBP14.52□□□□□ -0.09
SS18-210ENST00000578700 HIRIP3Q9BW71 556 aaPredicted RBP14.52□□□□□ -0.09
SS18-210ENST00000578700 ARHGEF10O15013 1369 aa14.51□□□□□ -0.09
SS18-210ENST00000578700 MSH5O43196 834 aa14.51□□□□□ -0.09
SS18-210ENST00000578700 PAK3O75914 559 aaPredicted RBP14.51□□□□□ -0.09
SS18-210ENST00000578700 NRXN1Q9ULB1 1477 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 60.3 ms