RNA–Protein interactions for RNA: ENST00000571409.1

CTDNEP1-206, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 5

Gene CTDNEP1, Length 741 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-206ENST00000571409 DDX17Q92841 729 aaKnown RBP44.46■■■■■ 4.71
CTDNEP1-206ENST00000571409 PLEKHH1Q9ULM0 1364 aa44.43■■■■■ 4.7
CTDNEP1-206ENST00000571409 LRP6O75581 1613 aa44.42■■■■■ 4.7
CTDNEP1-206ENST00000571409 ORAI2Q96SN7 254 aa44.42■■■■■ 4.7
CTDNEP1-206ENST00000571409 DHX57Q6P158 1386 aaKnown RBP44.41■■■■■ 4.7
CTDNEP1-206ENST00000571409 DCAF11Q8TEB1 546 aa44.38■■■■■ 4.7
CTDNEP1-206ENST00000571409 LRRC59Q96AG4 307 aaKnown RBP44.38■■■■■ 4.7
CTDNEP1-206ENST00000571409 KDM2AQ9Y2K7 1162 aa44.38■■■■■ 4.7
CTDNEP1-206ENST00000571409 SIRT1Q96EB6 747 aa44.34■■■■■ 4.69
CTDNEP1-206ENST00000571409 MEX3CQ5U5Q3 659 aaKnown RBP44.33■■■■■ 4.69
CTDNEP1-206ENST00000571409 POTEAQ6S8J7 498 aa44.31■■■■■ 4.68
CTDNEP1-206ENST00000571409 ADGRB1O14514 1584 aa44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 NUTM2BA6NNL0 878 aaPredicted RBP44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 NUTM2EB1AL46 878 aaPredicted RBP44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 ESCO1Q5FWF5 840 aa44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 NUTM2AQ8IVF1 878 aaPredicted RBP44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 STAC3Q96MF2 364 aa44.28■■■■■ 4.68
CTDNEP1-206ENST00000571409 NUTM2FA1L443 756 aa44.26■■■■■ 4.68
CTDNEP1-206ENST00000571409 FMN2Q9NZ56 1722 aa44.26■■■■■ 4.68
CTDNEP1-206ENST00000571409 PNPLA6Q8IY17 1366 aa44.26■■■■■ 4.68
CTDNEP1-206ENST00000571409 SOS2Q07890 1332 aaPredicted RBP44.25■■■■■ 4.67
CTDNEP1-206ENST00000571409 DLC1Q96QB1 1528 aa44.24■■■■■ 4.67
CTDNEP1-206ENST00000571409 PRAM1Q96QH2 718 aa44.23■■■■■ 4.67
CTDNEP1-206ENST00000571409 SAFB2Q14151 953 aaKnown RBP eCLIP44.19■■■■■ 4.66
CTDNEP1-206ENST00000571409 NPHP3Q7Z494 1330 aa44.18■■■■■ 4.66
CTDNEP1-206ENST00000571409 POGKQ9P215 609 aa44.16■■■■■ 4.66
CTDNEP1-206ENST00000571409 TRAK1Q9UPV9 953 aa44.15■■■■■ 4.66
CTDNEP1-206ENST00000571409 FOXO3O43524 673 aa44.13■■■■■ 4.66
CTDNEP1-206ENST00000571409 PXDNQ92626 1479 aa44.11■■■■■ 4.65
CTDNEP1-206ENST00000571409 ZNF772Q68DY9 489 aaPredicted RBP44.11■■■■■ 4.65
CTDNEP1-206ENST00000571409 KIF1AQ12756 1690 aa44.09■■■■■ 4.65
CTDNEP1-206ENST00000571409 RGPD8O14715 1765 aaPredicted RBP44.08■■■■■ 4.65
CTDNEP1-206ENST00000571409 XPCQ01831 940 aaPredicted RBP44.07■■■■■ 4.65
CTDNEP1-206ENST00000571409 ADGRB2O60241 1585 aa44.05■■■■■ 4.64
CTDNEP1-206ENST00000571409 COL22A1Q8NFW1 1626 aaPredicted RBP44.03■■■■■ 4.64
CTDNEP1-206ENST00000571409 AFF2P51816 1311 aa44.01■■■■■ 4.64
CTDNEP1-206ENST00000571409 C8orf37Q96NL8 207 aa44.01■■■■■ 4.64
CTDNEP1-206ENST00000571409 ARHGEF28Q8N1W1 1705 aaKnown RBP43.99■■■■■ 4.63
CTDNEP1-206ENST00000571409 ADAMTS2O95450 1211 aa43.98■■■■■ 4.63
CTDNEP1-206ENST00000571409 HIRIP3Q9BW71 556 aaPredicted RBP43.98■■■■■ 4.63
CTDNEP1-206ENST00000571409 MINK1Q8N4C8 1332 aaPredicted RBP43.98■■■■■ 4.63
CTDNEP1-206ENST00000571409 KIAA1210Q9ULL0 1709 aa43.97■■■■■ 4.63
CTDNEP1-206ENST00000571409 PHF8Q9UPP1 1060 aa43.97■■■■■ 4.63
CTDNEP1-206ENST00000571409 USP32Q8NFA0 1604 aa43.95■■■■■ 4.63
CTDNEP1-206ENST00000571409 ANKARQ7Z5J8 1434 aa43.94■■■■■ 4.62
CTDNEP1-206ENST00000571409 KRT28Q7Z3Y7 464 aa43.91■■■■■ 4.62
CTDNEP1-206ENST00000571409 NGLY1Q96IV0 654 aa43.89■■■■■ 4.62
CTDNEP1-206ENST00000571409 SIN3AQ96ST3 1273 aa43.87■■■■■ 4.61
CTDNEP1-206ENST00000571409 SPATA31A3Q5VYP0 1347 aa43.87■■■■■ 4.61
CTDNEP1-206ENST00000571409 EIF3AQ14152 1382 aaKnown RBP43.86■■■■■ 4.61
CTDNEP1-206ENST00000571409 TULP4Q9NRJ4 1543 aa43.85■■■■■ 4.61
CTDNEP1-206ENST00000571409 WASLO00401 505 aaPredicted RBP43.85■■■■■ 4.61
CTDNEP1-206ENST00000571409 RXRBP28702 533 aa43.85■■■■■ 4.61
CTDNEP1-206ENST00000571409 NBPF1Q3BBV0 1214 aa43.83■■■■■ 4.61
CTDNEP1-206ENST00000571409 PMFBP1Q8TBY8 1022 aa43.83■■■■■ 4.61
CTDNEP1-206ENST00000571409 PSME1Q06323 249 aa43.82■■■■■ 4.61
CTDNEP1-206ENST00000571409 L3MBTL2Q969R5 705 aa43.82■■■■■ 4.61
CTDNEP1-206ENST00000571409 PRR36Q9H6K5 1346 aa43.8■■■■■ 4.6
CTDNEP1-206ENST00000571409 MARF1Q9Y4F3 1742 aaKnown RBP43.79■■■■■ 4.6
CTDNEP1-206ENST00000571409 QTRT2Q9H974 415 aaKnown RBP43.79■■■■■ 4.6
CTDNEP1-206ENST00000571409 TNS3Q68CZ2 1445 aa43.79■■■■■ 4.6
CTDNEP1-206ENST00000571409 NEUROD1Q13562 356 aa43.78■■■■■ 4.6
CTDNEP1-206ENST00000571409 SBNO1A3KN83 1393 aa43.75■■■■■ 4.59
CTDNEP1-206ENST00000571409 USP21Q9UK80 565 aa43.74■■■■■ 4.59
CTDNEP1-206ENST00000571409 CDK12Q9NYV4 1490 aaPredicted RBP43.73■■■■■ 4.59
CTDNEP1-206ENST00000571409 FNBP4Q8N3X1 1017 aaPredicted RBP43.72■■■■■ 4.59
CTDNEP1-206ENST00000571409 RBM6P78332 1123 aaKnown RBP43.69■■■■■ 4.58
CTDNEP1-206ENST00000571409 TRIM26Q12899 539 aaPredicted RBP43.69■■■■■ 4.58
CTDNEP1-206ENST00000571409 ITSN1Q15811 1721 aa43.68■■■■■ 4.58
CTDNEP1-206ENST00000571409 ATP7BP35670 1465 aa43.68■■■■■ 4.58
CTDNEP1-206ENST00000571409 LMOD2Q6P5Q4 547 aa43.67■■■■■ 4.58
CTDNEP1-206ENST00000571409 TRPM3Q9HCF6 1732 aaPredicted RBP43.66■■■■■ 4.58
CTDNEP1-206ENST00000571409 ARHGEF10O15013 1369 aa43.66■■■■■ 4.58
CTDNEP1-206ENST00000571409 GPRASP1Q5JY77 1395 aa43.66■■■■■ 4.58
CTDNEP1-206ENST00000571409 CDK19Q9BWU1 502 aa43.65■■■■■ 4.58
CTDNEP1-206ENST00000571409 TRPM1Q7Z4N2 1603 aa43.64■■■■■ 4.58
CTDNEP1-206ENST00000571409 NUDT16Q96DE0 195 aaKnown RBP43.64■■■■■ 4.58
CTDNEP1-206ENST00000571409 TRPC5Q9UL62 973 aaPredicted RBP43.63■■■■■ 4.57
CTDNEP1-206ENST00000571409 PLEKHG5O94827 1062 aa43.62■■■■■ 4.57
CTDNEP1-206ENST00000571409 HAP1P54257 671 aaPredicted RBP43.61■■■■■ 4.57
CTDNEP1-206ENST00000571409 NGDNQ8NEJ9 315 aaKnown RBP43.61■■■■■ 4.57
CTDNEP1-206ENST00000571409 ABCA3Q99758 1704 aa43.6■■■■■ 4.57
CTDNEP1-206ENST00000571409 RGS12O14924 1447 aa43.6■■■■■ 4.57
CTDNEP1-206ENST00000571409 CABLES1Q8TDN4 633 aa43.6■■■■■ 4.57
CTDNEP1-206ENST00000571409 BCL9LQ86UU0 1499 aa43.59■■■■■ 4.57
CTDNEP1-206ENST00000571409 ATRNO75882 1429 aa43.59■■■■■ 4.57
CTDNEP1-206ENST00000571409 CENPJQ9HC77 1338 aaPredicted RBP43.59■■■■■ 4.57
CTDNEP1-206ENST00000571409 ALS2Q96Q42 1657 aa43.57■■■■■ 4.57
CTDNEP1-206ENST00000571409 TOPAZ1Q8N9V7 1692 aa43.56■■■■■ 4.56
CTDNEP1-206ENST00000571409 QRICH2Q9H0J4 1663 aa43.56■■■■■ 4.56
CTDNEP1-206ENST00000571409 SLIT2O94813 1529 aa43.52■■■■■ 4.56
CTDNEP1-206ENST00000571409 TNKS1BP1Q9C0C2 1729 aaKnown RBP43.51■■■■■ 4.56
CTDNEP1-206ENST00000571409 ROCK2O75116 1388 aaKnown RBP43.5■■■■■ 4.55
CTDNEP1-206ENST00000571409 CCDC61Q9Y6R9 512 aa43.49■■■■■ 4.55
CTDNEP1-206ENST00000571409 PAK3O75914 559 aaPredicted RBP43.48■■■■■ 4.55
CTDNEP1-206ENST00000571409 SRPK2P78362 688 aaKnown RBP43.46■■■■■ 4.55
CTDNEP1-206ENST00000571409 UNC5CLQ8IV45 518 aa43.45■■■■■ 4.55
CTDNEP1-206ENST00000571409 UPF1Q92900 1129 aaKnown RBP eCLIP43.45■■■■■ 4.55
CTDNEP1-206ENST00000571409 PLCH1Q4KWH8 1693 aa43.44■■■■■ 4.54
CTDNEP1-206ENST00000571409 POLR3AO14802 1390 aaPredicted RBP43.43■■■■■ 4.54
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms