RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 APLP2Q06481 763 aa28.13■■■□□ 2.09
CLK3-227ENST00000570296 NPHP3Q7Z494 1330 aa28.12■■■□□ 2.09
CLK3-227ENST00000570296 ZNF326Q5BKZ1 582 aaKnown RBP28.11■■■□□ 2.09
CLK3-227ENST00000570296 UNC5CLQ8IV45 518 aa28.11■■■□□ 2.09
CLK3-227ENST00000570296 PXDNQ92626 1479 aa28.1■■■□□ 2.09
CLK3-227ENST00000570296 SLIT2O94813 1529 aa28.09■■■□□ 2.09
CLK3-227ENST00000570296 HRCP23327 699 aa28.09■■■□□ 2.09
CLK3-227ENST00000570296 PRAG1Q86YV5 1406 aa28.08■■■□□ 2.09
CLK3-227ENST00000570296 NEXMIFQ5QGS0 1516 aa28.08■■■□□ 2.08
CLK3-227ENST00000570296 ROBO2Q9HCK4 1378 aa28.07■■■□□ 2.08
CLK3-227ENST00000570296 FAM50AQ14320 339 aaKnown RBP28.06■■■□□ 2.08
CLK3-227ENST00000570296 PSDA5PKW4 1024 aaPredicted RBP28.05■■■□□ 2.08
CLK3-227ENST00000570296 NUP155O75694 1391 aa28.03■■■□□ 2.08
CLK3-227ENST00000570296 SEPT12Q8IYM1 358 aa28.02■■■□□ 2.08
CLK3-227ENST00000570296 HFM1A2PYH4 1435 aa28.01■■■□□ 2.08
CLK3-227ENST00000570296 CDC42BPGQ6DT37 1551 aa28.01■■■□□ 2.07
CLK3-227ENST00000570296 ESCO1Q5FWF5 840 aa28■■■□□ 2.07
CLK3-227ENST00000570296 BAG6P46379 1132 aa27.99■■■□□ 2.07
CLK3-227ENST00000570296 LRPPRCP42704 1394 aaKnown RBP27.99■■■□□ 2.07
CLK3-227ENST00000570296 ROCK1Q13464 1354 aa27.99■■■□□ 2.07
CLK3-227ENST00000570296 USP32Q8NFA0 1604 aa27.97■■■□□ 2.07
CLK3-227ENST00000570296 ONECUT3O60422 494 aaPredicted RBP27.96■■■□□ 2.07
CLK3-227ENST00000570296 KRT27Q7Z3Y8 459 aa27.96■■■□□ 2.07
CLK3-227ENST00000570296 FOXO3O43524 673 aa27.95■■■□□ 2.06
CLK3-227ENST00000570296 XPCQ01831 940 aaPredicted RBP27.94■■■□□ 2.06
CLK3-227ENST00000570296 VPS72Q15906 364 aa27.94■■■□□ 2.06
CLK3-227ENST00000570296 NWD2Q9ULI1 1742 aa27.93■■■□□ 2.06
CLK3-227ENST00000570296 CLTCL1P53675 1640 aa27.92■■■□□ 2.06
CLK3-227ENST00000570296 KIF1BO60333 1816 aa27.92■■■□□ 2.06
CLK3-227ENST00000570296 PLCH1Q4KWH8 1693 aa27.89■■■□□ 2.06
CLK3-227ENST00000570296 RGPD1P0DJD0 1748 aa27.89■■■□□ 2.05
CLK3-227ENST00000570296 SPATA31A3Q5VYP0 1347 aa27.89■■■□□ 2.05
CLK3-227ENST00000570296 LOC105371045A0A1W2PR82 267 aa27.88■■■□□ 2.05
CLK3-227ENST00000570296 YY1P25490 414 aa27.88■■■□□ 2.05
CLK3-227ENST00000570296 VGFO15240 615 aaPredicted RBP27.87■■■□□ 2.05
CLK3-227ENST00000570296 R3HDM1Q15032 1099 aaKnown RBP27.84■■■□□ 2.05
CLK3-227ENST00000570296 KIF1AQ12756 1690 aa27.84■■■□□ 2.05
CLK3-227ENST00000570296 CCDC144AA2RUR9 1427 aa27.84■■■□□ 2.05
CLK3-227ENST00000570296 CCDC9Q9Y3X0 531 aaKnown RBP27.83■■■□□ 2.05
CLK3-227ENST00000570296 NAIPQ13075 1403 aa27.82■■■□□ 2.04
CLK3-227ENST00000570296 EN1Q05925 392 aaPredicted RBP27.81■■■□□ 2.04
CLK3-227ENST00000570296 DISP2A7MBM2 1401 aa27.81■■■□□ 2.04
CLK3-227ENST00000570296 HAP1P54257 671 aaPredicted RBP27.79■■■□□ 2.04
CLK3-227ENST00000570296 ABCA3Q99758 1704 aa27.76■■■□□ 2.03
CLK3-227ENST00000570296 A0A0G2JS52 829 aa27.76■■■□□ 2.03
CLK3-227ENST00000570296 MYT1Q01538 1121 aa27.76■■■□□ 2.03
CLK3-227ENST00000570296 TNS3Q68CZ2 1445 aa27.75■■■□□ 2.03
CLK3-227ENST00000570296 TNS1Q9HBL0 1735 aaKnown RBP27.75■■■□□ 2.03
CLK3-227ENST00000570296 RPGRIP1LQ68CZ1 1315 aa27.75■■■□□ 2.03
CLK3-227ENST00000570296 FMN2Q9NZ56 1722 aa27.75■■■□□ 2.03
CLK3-227ENST00000570296 KRT28Q7Z3Y7 464 aa27.74■■■□□ 2.03
CLK3-227ENST00000570296 PPLO60437 1756 aa27.73■■■□□ 2.03
CLK3-227ENST00000570296 NUTM2FA1L443 756 aa27.73■■■□□ 2.03
CLK3-227ENST00000570296 NRAPQ86VF7 1730 aa27.72■■■□□ 2.03
CLK3-227ENST00000570296 TECPR2O15040 1411 aa27.71■■■□□ 2.03
CLK3-227ENST00000570296 FAM98CQ17RN3 349 aaKnown RBP27.7■■■□□ 2.02
CLK3-227ENST00000570296 CABLES1Q8TDN4 633 aa27.7■■■□□ 2.02
CLK3-227ENST00000570296 ADGRB2O60241 1585 aa27.69■■■□□ 2.02
CLK3-227ENST00000570296 PSME1Q06323 249 aa27.68■■■□□ 2.02
CLK3-227ENST00000570296 ARHGEF10O15013 1369 aa27.66■■■□□ 2.02
CLK3-227ENST00000570296 FAM83GA6ND36 823 aa27.66■■■□□ 2.02
CLK3-227ENST00000570296 SBNO1A3KN83 1393 aa27.65■■■□□ 2.02
CLK3-227ENST00000570296 EZH2Q15910 746 aaKnown RBP27.65■■■□□ 2.02
CLK3-227ENST00000570296 WAPLQ7Z5K2 1190 aa27.65■■■□□ 2.02
CLK3-227ENST00000570296 KNDC1Q76NI1 1749 aa27.64■■■□□ 2.02
CLK3-227ENST00000570296 PARD3Q8TEW0 1356 aa27.64■■■□□ 2.02
CLK3-227ENST00000570296 THSD7AQ9UPZ6 1657 aa27.62■■■□□ 2.01
CLK3-227ENST00000570296 CAMKK2Q96RR4 588 aa27.62■■■□□ 2.01
CLK3-227ENST00000570296 RGPD8O14715 1765 aaPredicted RBP27.61■■■□□ 2.01
CLK3-227ENST00000570296 DCAF8L1A6NGE4 600 aa27.61■■■□□ 2.01
CLK3-227ENST00000570296 FAM182BQ5T319 152 aa27.61■■■□□ 2.01
CLK3-227ENST00000570296 PHF8Q9UPP1 1060 aa27.6■■■□□ 2.01
CLK3-227ENST00000570296 COL14A1Q05707 1796 aaKnown RBP27.6■■■□□ 2.01
CLK3-227ENST00000570296 ABCC11Q96J66 1382 aa27.6■■■□□ 2.01
CLK3-227ENST00000570296 IFT172Q9UG01 1749 aa27.59■■■□□ 2.01
CLK3-227ENST00000570296 STK26Q9P289 416 aa27.59■■■□□ 2.01
CLK3-227ENST00000570296 NRXN1Q9ULB1 1477 aa27.58■■■□□ 2.01
CLK3-227ENST00000570296 PLEKHG5O94827 1062 aa27.58■■■□□ 2.01
CLK3-227ENST00000570296 BTG4Q9NY30 223 aa27.58■■■□□ 2.01
CLK3-227ENST00000570296 RREB1Q92766 1687 aa27.58■■■□□ 2.01
CLK3-227ENST00000570296 PLEKHH1Q9ULM0 1364 aa27.58■■■□□ 2.01
CLK3-227ENST00000570296 LMOD2Q6P5Q4 547 aa27.57■■■□□ 2
CLK3-227ENST00000570296 SPATA31A5Q5VU36 1347 aa27.57■■■□□ 2
CLK3-227ENST00000570296 SPATA31A7Q8IWB4 1347 aa27.57■■■□□ 2
CLK3-227ENST00000570296 NINLQ9Y2I6 1382 aa27.56■■■□□ 2
CLK3-227ENST00000570296 ITGAEP38570 1179 aa27.55■■■□□ 2
CLK3-227ENST00000570296 NUP188Q5SRE5 1749 aa27.53■■■□□ 2
CLK3-227ENST00000570296 FAM196AQ6ZSG2 479 aa27.52■■■□□ 2
CLK3-227ENST00000570296 PPP1R1BQ9UD71 204 aaPredicted RBP27.52■■■□□ 2
CLK3-227ENST00000570296 RRBP1Q9P2E9 1410 aaKnown RBP27.51■■□□□ 1.99
CLK3-227ENST00000570296 TRIM37O94972 964 aa27.51■■□□□ 1.99
CLK3-227ENST00000570296 SPON1Q9HCB6 807 aa27.5■■□□□ 1.99
CLK3-227ENST00000570296 ADGRF5Q8IZF2 1346 aa27.49■■□□□ 1.99
CLK3-227ENST00000570296 APBA3O96018 575 aa27.49■■□□□ 1.99
CLK3-227ENST00000570296 NBPF8Q3BBV2 869 aa27.49■■□□□ 1.99
CLK3-227ENST00000570296 NBPF14Q5TI25 921 aa27.49■■□□□ 1.99
CLK3-227ENST00000570296 SIRT1Q96EB6 747 aa27.47■■□□□ 1.99
CLK3-227ENST00000570296 TRPM3Q9HCF6 1732 aaPredicted RBP27.47■■□□□ 1.99
CLK3-227ENST00000570296 YTHDC2Q9H6S0 1430 aaKnown RBP27.46■■□□□ 1.99
CLK3-227ENST00000570296 ALS2Q96Q42 1657 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms