RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 CDC42BPGQ6DT37 1551 aa26.48■■□□□ 1.83
CLK3-221ENST00000568139 TRPC5Q9UL62 973 aaPredicted RBP26.46■■□□□ 1.83
CLK3-221ENST00000568139 NPHP3Q7Z494 1330 aa26.45■■□□□ 1.83
CLK3-221ENST00000568139 ADGRF5Q8IZF2 1346 aa26.45■■□□□ 1.83
CLK3-221ENST00000568139 FOXD1Q16676 465 aa26.45■■□□□ 1.82
CLK3-221ENST00000568139 ESCO1Q5FWF5 840 aa26.45■■□□□ 1.82
CLK3-221ENST00000568139 MYOM2P54296 1465 aa26.43■■□□□ 1.82
CLK3-221ENST00000568139 PXDNQ92626 1479 aa26.43■■□□□ 1.82
CLK3-221ENST00000568139 TECPR2O15040 1411 aa26.42■■□□□ 1.82
CLK3-221ENST00000568139 ATRNO75882 1429 aa26.42■■□□□ 1.82
CLK3-221ENST00000568139 CCDC144AA2RUR9 1427 aa26.41■■□□□ 1.82
CLK3-221ENST00000568139 SPATA31E1Q6ZUB1 1445 aa26.4■■□□□ 1.82
CLK3-221ENST00000568139 IFT172Q9UG01 1749 aa26.4■■□□□ 1.82
CLK3-221ENST00000568139 ATAD2Q6PL18 1390 aa26.4■■□□□ 1.82
CLK3-221ENST00000568139 MARF1Q9Y4F3 1742 aaKnown RBP26.39■■□□□ 1.82
CLK3-221ENST00000568139 LRPPRCP42704 1394 aaKnown RBP26.39■■□□□ 1.82
CLK3-221ENST00000568139 ANKRD30BQ9BXX2 1392 aa26.39■■□□□ 1.82
CLK3-221ENST00000568139 FOXO3O43524 673 aa26.39■■□□□ 1.82
CLK3-221ENST00000568139 RGL3Q3MIN7 710 aa26.39■■□□□ 1.82
CLK3-221ENST00000568139 WAPLQ7Z5K2 1190 aa26.39■■□□□ 1.82
CLK3-221ENST00000568139 ABCC11Q96J66 1382 aa26.38■■□□□ 1.81
CLK3-221ENST00000568139 STK26Q9P289 416 aa26.38■■□□□ 1.81
CLK3-221ENST00000568139 KNDC1Q76NI1 1749 aa26.37■■□□□ 1.81
CLK3-221ENST00000568139 BCL9LQ86UU0 1499 aa26.36■■□□□ 1.81
CLK3-221ENST00000568139 XPCQ01831 940 aaPredicted RBP26.35■■□□□ 1.81
CLK3-221ENST00000568139 MPHOSPH9Q99550 1183 aa26.35■■□□□ 1.81
CLK3-221ENST00000568139 PLEKHH1Q9ULM0 1364 aa26.33■■□□□ 1.81
CLK3-221ENST00000568139 PIK3C2GO75747 1445 aa26.33■■□□□ 1.81
CLK3-221ENST00000568139 NUTM2FA1L443 756 aa26.33■■□□□ 1.81
CLK3-221ENST00000568139 TMEM132EQ6IEE7 984 aa26.33■■□□□ 1.81
CLK3-221ENST00000568139 FMN2Q9NZ56 1722 aa26.31■■□□□ 1.8
CLK3-221ENST00000568139 SIRT1Q96EB6 747 aa26.29■■□□□ 1.8
CLK3-221ENST00000568139 YTHDC2Q9H6S0 1430 aaKnown RBP26.29■■□□□ 1.8
CLK3-221ENST00000568139 GJD4Q96KN9 370 aaPredicted RBP26.28■■□□□ 1.8
CLK3-221ENST00000568139 SPATA31A3Q5VYP0 1347 aa26.28■■□□□ 1.8
CLK3-221ENST00000568139 KIF1AQ12756 1690 aa26.28■■□□□ 1.8
CLK3-221ENST00000568139 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.28■■□□□ 1.8
CLK3-221ENST00000568139 CCDC125Q86Z20 511 aa26.25■■□□□ 1.79
CLK3-221ENST00000568139 C14orf93Q9H972 538 aaKnown RBP26.24■■□□□ 1.79
CLK3-221ENST00000568139 SLIT2O94813 1529 aa26.24■■□□□ 1.79
CLK3-221ENST00000568139 RGPD8O14715 1765 aaPredicted RBP26.23■■□□□ 1.79
CLK3-221ENST00000568139 KRT28Q7Z3Y7 464 aa26.23■■□□□ 1.79
CLK3-221ENST00000568139 UNC5CLQ8IV45 518 aa26.23■■□□□ 1.79
CLK3-221ENST00000568139 EP400Q96L91 3159 aa26.22■■□□□ 1.79
CLK3-221ENST00000568139 NRXN1Q9ULB1 1477 aa26.21■■□□□ 1.79
CLK3-221ENST00000568139 GLI3P10071 1580 aa26.2■■□□□ 1.78
CLK3-221ENST00000568139 USP32Q8NFA0 1604 aa26.19■■□□□ 1.78
CLK3-221ENST00000568139 ACIN1Q9UKV3 1341 aaKnown RBP26.18■■□□□ 1.78
CLK3-221ENST00000568139 RALGAPBQ86X10 1494 aa26.18■■□□□ 1.78
CLK3-221ENST00000568139 ZRANB1Q9UGI0 708 aa26.18■■□□□ 1.78
CLK3-221ENST00000568139 PHF8Q9UPP1 1060 aa26.18■■□□□ 1.78
CLK3-221ENST00000568139 DHX57Q6P158 1386 aaKnown RBP26.18■■□□□ 1.78
CLK3-221ENST00000568139 CFAP70Q5T0N1 1121 aa26.17■■□□□ 1.78
CLK3-221ENST00000568139 TNS3Q68CZ2 1445 aa26.16■■□□□ 1.78
CLK3-221ENST00000568139 PSME1Q06323 249 aa26.16■■□□□ 1.78
CLK3-221ENST00000568139 SRCAPQ6ZRS2 3230 aa26.14■■□□□ 1.78
CLK3-221ENST00000568139 BRWD3Q6RI45 1802 aa26.14■■□□□ 1.77
CLK3-221ENST00000568139 SBNO1A3KN83 1393 aa26.13■■□□□ 1.77
CLK3-221ENST00000568139 PRAM1Q96QH2 718 aa26.12■■□□□ 1.77
CLK3-221ENST00000568139 CABLES1Q8TDN4 633 aa26.11■■□□□ 1.77
CLK3-221ENST00000568139 NWD2Q9ULI1 1742 aa26.11■■□□□ 1.77
CLK3-221ENST00000568139 DLC1Q96QB1 1528 aa26.1■■□□□ 1.77
CLK3-221ENST00000568139 HAP1P54257 671 aaPredicted RBP26.1■■□□□ 1.77
CLK3-221ENST00000568139 VPS72Q15906 364 aa26.1■■□□□ 1.77
CLK3-221ENST00000568139 ABCA3Q99758 1704 aa26.09■■□□□ 1.77
CLK3-221ENST00000568139 BLMP54132 1417 aaPredicted RBP26.09■■□□□ 1.77
CLK3-221ENST00000568139 SAFB2Q14151 953 aaKnown RBP eCLIP26.09■■□□□ 1.77
CLK3-221ENST00000568139 PLCH1Q4KWH8 1693 aa26.09■■□□□ 1.77
CLK3-221ENST00000568139 ARHGEF10O15013 1369 aa26.07■■□□□ 1.76
CLK3-221ENST00000568139 ANKARQ7Z5J8 1434 aa26.07■■□□□ 1.76
CLK3-221ENST00000568139 ONECUT3O60422 494 aaPredicted RBP26.07■■□□□ 1.76
CLK3-221ENST00000568139 SEPT12Q8IYM1 358 aa26.07■■□□□ 1.76
CLK3-221ENST00000568139 ADGRB2O60241 1585 aa26.05■■□□□ 1.76
CLK3-221ENST00000568139 POGKQ9P215 609 aa26.05■■□□□ 1.76
CLK3-221ENST00000568139 LMOD2Q6P5Q4 547 aa26.04■■□□□ 1.76
CLK3-221ENST00000568139 PMFBP1Q8TBY8 1022 aa26.04■■□□□ 1.76
CLK3-221ENST00000568139 ADGRB1O14514 1584 aa26.03■■□□□ 1.76
CLK3-221ENST00000568139 FAM83GA6ND36 823 aa26.02■■□□□ 1.76
CLK3-221ENST00000568139 PLEKHG5O94827 1062 aa26.02■■□□□ 1.76
CLK3-221ENST00000568139 TRPM3Q9HCF6 1732 aaPredicted RBP26.01■■□□□ 1.75
CLK3-221ENST00000568139 DEFB132Q7Z7B7 95 aa26■■□□□ 1.75
CLK3-221ENST00000568139 CCDC9Q9Y3X0 531 aaKnown RBP26■■□□□ 1.75
CLK3-221ENST00000568139 SF3B2Q13435 895 aaKnown RBP25.98■■□□□ 1.75
CLK3-221ENST00000568139 KRT27Q7Z3Y8 459 aa25.98■■□□□ 1.75
CLK3-221ENST00000568139 TRAK1Q9UPV9 953 aa25.98■■□□□ 1.75
CLK3-221ENST00000568139 RAB3GAP2Q9H2M9 1393 aa25.97■■□□□ 1.75
CLK3-221ENST00000568139 ALS2Q96Q42 1657 aa25.97■■□□□ 1.75
CLK3-221ENST00000568139 NRAPQ86VF7 1730 aa25.97■■□□□ 1.75
CLK3-221ENST00000568139 HIRIP3Q9BW71 556 aaPredicted RBP25.96■■□□□ 1.75
CLK3-221ENST00000568139 PRR36Q9H6K5 1346 aa25.95■■□□□ 1.75
CLK3-221ENST00000568139 EIF3AQ14152 1382 aaKnown RBP25.95■■□□□ 1.74
CLK3-221ENST00000568139 GPRASP1Q5JY77 1395 aa25.95■■□□□ 1.74
CLK3-221ENST00000568139 TULP4Q9NRJ4 1543 aa25.93■■□□□ 1.74
CLK3-221ENST00000568139 MINK1Q8N4C8 1332 aaPredicted RBP25.93■■□□□ 1.74
CLK3-221ENST00000568139 COL14A1Q05707 1796 aaKnown RBP25.92■■□□□ 1.74
CLK3-221ENST00000568139 WASLO00401 505 aaPredicted RBP25.92■■□□□ 1.74
CLK3-221ENST00000568139 BTG4Q9NY30 223 aa25.92■■□□□ 1.74
CLK3-221ENST00000568139 STAC3Q96MF2 364 aa25.91■■□□□ 1.74
CLK3-221ENST00000568139 KDM2AQ9Y2K7 1162 aa25.91■■□□□ 1.74
CLK3-221ENST00000568139 DCAF11Q8TEB1 546 aa25.9■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 160.9 ms