RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 CABP2Q9NPB3 220 aa26.9■■□□□ 1.9
CLN3-230ENST00000568076 ALKQ9UM73 1620 aa26.9■■□□□ 1.9
CLN3-230ENST00000568076 YTHDC2Q9H6S0 1430 aaKnown RBP26.89■■□□□ 1.9
CLN3-230ENST00000568076 A2ML1A8K2U0 1454 aa26.89■■□□□ 1.9
CLN3-230ENST00000568076 STAG3Q9UJ98 1225 aa26.89■■□□□ 1.89
CLN3-230ENST00000568076 POLR3AO14802 1390 aaPredicted RBP26.88■■□□□ 1.89
CLN3-230ENST00000568076 ANKRD36BQ8N2N9 1353 aa26.87■■□□□ 1.89
CLN3-230ENST00000568076 MORC1Q86VD1 984 aa26.87■■□□□ 1.89
CLN3-230ENST00000568076 CCDC146Q8IYE0 955 aa26.87■■□□□ 1.89
CLN3-230ENST00000568076 PRAM1Q96QH2 718 aa26.84■■□□□ 1.89
CLN3-230ENST00000568076 CGNL1Q0VF96 1302 aa26.84■■□□□ 1.89
CLN3-230ENST00000568076 CCDC136Q96JN2 1154 aa26.83■■□□□ 1.89
CLN3-230ENST00000568076 TNNT2P45379 298 aaPredicted RBP26.82■■□□□ 1.88
CLN3-230ENST00000568076 RIMS2Q9UQ26 1411 aa26.81■■□□□ 1.88
CLN3-230ENST00000568076 DUSP27Q5VZP5 1158 aa26.81■■□□□ 1.88
CLN3-230ENST00000568076 MINK1Q8N4C8 1332 aaPredicted RBP26.8■■□□□ 1.88
CLN3-230ENST00000568076 APAF1O14727 1248 aa26.8■■□□□ 1.88
CLN3-230ENST00000568076 EXOC6Q8TAG9 804 aa26.8■■□□□ 1.88
CLN3-230ENST00000568076 SHPRHQ149N8 1683 aa26.8■■□□□ 1.88
CLN3-230ENST00000568076 SRPK2P78362 688 aaKnown RBP26.79■■□□□ 1.88
CLN3-230ENST00000568076 GOLGA2Q08379 1002 aa26.78■■□□□ 1.88
CLN3-230ENST00000568076 POGKQ9P215 609 aa26.78■■□□□ 1.88
CLN3-230ENST00000568076 ZMYM3Q14202 1370 aa26.78■■□□□ 1.88
CLN3-230ENST00000568076 NINLQ9Y2I6 1382 aa26.78■■□□□ 1.88
CLN3-230ENST00000568076 A0A1W2PP64 1363 aa26.78■■□□□ 1.88
CLN3-230ENST00000568076 NSD2O96028 1365 aa26.76■■□□□ 1.88
CLN3-230ENST00000568076 SETD1AO15047 1707 aaKnown RBP26.76■■□□□ 1.88
CLN3-230ENST00000568076 PLIN1O60240 522 aa26.75■■□□□ 1.87
CLN3-230ENST00000568076 ATAD2Q6PL18 1390 aa26.75■■□□□ 1.87
CLN3-230ENST00000568076 SLFN5Q08AF3 891 aa26.75■■□□□ 1.87
CLN3-230ENST00000568076 ABCC11Q96J66 1382 aa26.73■■□□□ 1.87
CLN3-230ENST00000568076 CD163L1Q9NR16 1453 aa26.73■■□□□ 1.87
CLN3-230ENST00000568076 MTHFSP49914 203 aa26.73■■□□□ 1.87
CLN3-230ENST00000568076 TRMT2AQ8IZ69 625 aaKnown RBP26.73■■□□□ 1.87
CLN3-230ENST00000568076 SPINK5Q9NQ38 1064 aaPredicted RBP26.72■■□□□ 1.87
CLN3-230ENST00000568076 DLC1Q96QB1 1528 aa26.72■■□□□ 1.87
CLN3-230ENST00000568076 ESF1Q9H501 851 aaKnown RBP26.71■■□□□ 1.87
CLN3-230ENST00000568076 NRXN3Q9Y4C0 1643 aa26.71■■□□□ 1.87
CLN3-230ENST00000568076 CDK19Q9BWU1 502 aa26.69■■□□□ 1.86
CLN3-230ENST00000568076 WAPLQ7Z5K2 1190 aa26.67■■□□□ 1.86
CLN3-230ENST00000568076 NGEFQ8N5V2 710 aa26.67■■□□□ 1.86
CLN3-230ENST00000568076 DMRT2Q9Y5R5 561 aa26.67■■□□□ 1.86
CLN3-230ENST00000568076 TERF2IPQ9NYB0 399 aa26.65■■□□□ 1.86
CLN3-230ENST00000568076 NLRP1Q9C000 1473 aa26.65■■□□□ 1.86
CLN3-230ENST00000568076 TNRQ92752 1358 aa26.64■■□□□ 1.85
CLN3-230ENST00000568076 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.64■■□□□ 1.85
CLN3-230ENST00000568076 CFAP53Q96M91 514 aa26.64■■□□□ 1.85
CLN3-230ENST00000568076 GGNBP2Q9H3C7 697 aa26.64■■□□□ 1.85
CLN3-230ENST00000568076 METP08581 1390 aa26.63■■□□□ 1.85
CLN3-230ENST00000568076 C20orf194Q5TEA3 1177 aa26.63■■□□□ 1.85
CLN3-230ENST00000568076 CRBNQ96SW2 442 aa26.63■■□□□ 1.85
CLN3-230ENST00000568076 IQSEC2Q5JU85 1478 aa26.63■■□□□ 1.85
CLN3-230ENST00000568076 FYB1O15117 783 aa26.62■■□□□ 1.85
CLN3-230ENST00000568076 RUNDC1Q96C34 613 aa26.62■■□□□ 1.85
CLN3-230ENST00000568076 E9PSI1 815 aa26.62■■□□□ 1.85
CLN3-230ENST00000568076 CABP1Q9NZU7 370 aa26.62■■□□□ 1.85
CLN3-230ENST00000568076 NKTRP30414 1462 aaKnown RBP26.61■■□□□ 1.85
CLN3-230ENST00000568076 WWC1Q8IX03 1113 aa26.6■■□□□ 1.85
CLN3-230ENST00000568076 MED14O60244 1454 aa26.6■■□□□ 1.85
CLN3-230ENST00000568076 ANKRD26Q9UPS8 1709 aa26.59■■□□□ 1.85
CLN3-230ENST00000568076 HDGFL2Q7Z4V5 671 aaPredicted RBP26.58■■□□□ 1.85
CLN3-230ENST00000568076 TCP11L2Q8N4U5 519 aa26.58■■□□□ 1.85
CLN3-230ENST00000568076 UBR1Q8IWV7 1749 aa26.56■■□□□ 1.84
CLN3-230ENST00000568076 PHF23Q9BUL5 403 aaPredicted RBP26.56■■□□□ 1.84
CLN3-230ENST00000568076 RRP7AQ9Y3A4 280 aaKnown RBP26.56■■□□□ 1.84
CLN3-230ENST00000568076 FANCIQ9NVI1 1328 aa26.55■■□□□ 1.84
CLN3-230ENST00000568076 TMEM2Q9UHN6 1383 aa26.55■■□□□ 1.84
CLN3-230ENST00000568076 COL3A1P02461 1466 aaPredicted RBP26.55■■□□□ 1.84
CLN3-230ENST00000568076 NEUROD2Q15784 382 aa26.54■■□□□ 1.84
CLN3-230ENST00000568076 HDGFP51858 240 aaKnown RBP26.53■■□□□ 1.84
CLN3-230ENST00000568076 TXNDC2Q86VQ3 553 aa26.53■■□□□ 1.84
CLN3-230ENST00000568076 U2AF1L5P0DN76 240 aaPredicted RBP26.52■■□□□ 1.84
CLN3-230ENST00000568076 U2AF1Q01081 240 aaKnown RBP eCLIP26.52■■□□□ 1.84
CLN3-230ENST00000568076 ATP7BP35670 1465 aa26.52■■□□□ 1.84
CLN3-230ENST00000568076 KNDC1Q76NI1 1749 aa26.52■■□□□ 1.84
CLN3-230ENST00000568076 TECPR2O15040 1411 aa26.51■■□□□ 1.83
CLN3-230ENST00000568076 KIF20BQ96Q89 1820 aa26.51■■□□□ 1.83
CLN3-230ENST00000568076 WASLO00401 505 aaPredicted RBP26.5■■□□□ 1.83
CLN3-230ENST00000568076 FAM135BQ49AJ0 1406 aa26.49■■□□□ 1.83
CLN3-230ENST00000568076 BCAR3O75815 825 aa26.49■■□□□ 1.83
CLN3-230ENST00000568076 GOLGA6L2Q8N9W4 650 aaPredicted RBP26.49■■□□□ 1.83
CLN3-230ENST00000568076 ADGRB2O60241 1585 aa26.49■■□□□ 1.83
CLN3-230ENST00000568076 CCDC27Q2M243 656 aa26.48■■□□□ 1.83
CLN3-230ENST00000568076 SIRT1Q96EB6 747 aa26.47■■□□□ 1.83
CLN3-230ENST00000568076 CPS1P31327 1500 aa26.47■■□□□ 1.83
CLN3-230ENST00000568076 ADAMTS13Q76LX8 1427 aa26.47■■□□□ 1.83
CLN3-230ENST00000568076 CEBPAP49715 358 aaPredicted RBP26.46■■□□□ 1.83
CLN3-230ENST00000568076 WDR63Q8IWG1 891 aa26.46■■□□□ 1.83
CLN3-230ENST00000568076 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.46■■□□□ 1.83
CLN3-230ENST00000568076 CPSF1Q10570 1443 aaKnown RBP26.45■■□□□ 1.83
CLN3-230ENST00000568076 MSH5O43196 834 aa26.45■■□□□ 1.82
CLN3-230ENST00000568076 NCBP3Q53F19 620 aaKnown RBP26.45■■□□□ 1.82
CLN3-230ENST00000568076 PNPLA6Q8IY17 1366 aa26.45■■□□□ 1.82
CLN3-230ENST00000568076 PPIP5K1Q6PFW1 1433 aa26.44■■□□□ 1.82
CLN3-230ENST00000568076 PLEKHF1Q96S99 279 aa26.44■■□□□ 1.82
CLN3-230ENST00000568076 LTKP29376 864 aa26.44■■□□□ 1.82
CLN3-230ENST00000568076 U2SURPO15042 1029 aaKnown RBP26.43■■□□□ 1.82
CLN3-230ENST00000568076 ROBO2Q9HCK4 1378 aa26.41■■□□□ 1.82
CLN3-230ENST00000568076 NUDT16Q96DE0 195 aaKnown RBP26.4■■□□□ 1.82
CLN3-230ENST00000568076 NCKAP5LQ9HCH0 1330 aa26.4■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms