RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.55■□□□□ 0.4
VPS4A-204ENST00000566354 ASXL1Q8IXJ9 1541 aa17.55■□□□□ 0.4
VPS4A-204ENST00000566354 SETD1BQ9UPS6 1966 aaKnown RBP17.55■□□□□ 0.4
VPS4A-204ENST00000566354 CEP170BQ9Y4F5 1589 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-204ENST00000566354 ALKQ9UM73 1620 aa17.54■□□□□ 0.4
VPS4A-204ENST00000566354 PER1O15534 1290 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-204ENST00000566354 PAK3O75914 559 aaPredicted RBP17.54■□□□□ 0.4
VPS4A-204ENST00000566354 LTKP29376 864 aa17.54■□□□□ 0.4
VPS4A-204ENST00000566354 TRAK1Q9UPV9 953 aa17.54■□□□□ 0.4
VPS4A-204ENST00000566354 NRXN3Q9Y4C0 1643 aa17.53■□□□□ 0.4
VPS4A-204ENST00000566354 INSRP06213 1382 aa17.52■□□□□ 0.4
VPS4A-204ENST00000566354 HDGFP51858 240 aaKnown RBP17.52■□□□□ 0.4
VPS4A-204ENST00000566354 THEMISQ8N1K5 641 aaPredicted RBP17.52■□□□□ 0.39
VPS4A-204ENST00000566354 TXNDC2Q86VQ3 553 aa17.51■□□□□ 0.39
VPS4A-204ENST00000566354 SLIT1O75093 1534 aa17.51■□□□□ 0.39
VPS4A-204ENST00000566354 EIF3AQ14152 1382 aaKnown RBP17.51■□□□□ 0.39
VPS4A-204ENST00000566354 DISP3Q9P2K9 1392 aa17.5■□□□□ 0.39
VPS4A-204ENST00000566354 ARHGAP23Q9P227 1491 aa17.5■□□□□ 0.39
VPS4A-204ENST00000566354 TCERG1O14776 1098 aaKnown RBP17.5■□□□□ 0.39
VPS4A-204ENST00000566354 EXOC6Q8TAG9 804 aa17.5■□□□□ 0.39
VPS4A-204ENST00000566354 ZBTB47Q9UFB7 747 aaPredicted RBP17.5■□□□□ 0.39
VPS4A-204ENST00000566354 SETD1AO15047 1707 aaKnown RBP17.5■□□□□ 0.39
VPS4A-204ENST00000566354 DEKP35659 375 aaKnown RBP17.49■□□□□ 0.39
VPS4A-204ENST00000566354 STK26Q9P289 416 aa17.49■□□□□ 0.39
VPS4A-204ENST00000566354 ZNF142P52746 1687 aaPredicted RBP17.49■□□□□ 0.39
VPS4A-204ENST00000566354 EID1Q9Y6B2 187 aa17.48■□□□□ 0.39
VPS4A-204ENST00000566354 KDM4FA0A1W2PPD8 638 aa17.47■□□□□ 0.39
VPS4A-204ENST00000566354 ARHGEF28Q8N1W1 1705 aaKnown RBP17.47■□□□□ 0.39
VPS4A-204ENST00000566354 YTHDC2Q9H6S0 1430 aaKnown RBP17.46■□□□□ 0.39
VPS4A-204ENST00000566354 TMF1P82094 1093 aa17.46■□□□□ 0.39
VPS4A-204ENST00000566354 SALL2Q9Y467 1007 aaPredicted RBP17.46■□□□□ 0.39
VPS4A-204ENST00000566354 METP08581 1390 aa17.46■□□□□ 0.39
VPS4A-204ENST00000566354 PLEKHG1Q9ULL1 1385 aa17.46■□□□□ 0.39
VPS4A-204ENST00000566354 CENPJQ9HC77 1338 aaPredicted RBP17.46■□□□□ 0.38
VPS4A-204ENST00000566354 ADAMTS13Q76LX8 1427 aa17.45■□□□□ 0.38
VPS4A-204ENST00000566354 NBR1Q14596 966 aa17.44■□□□□ 0.38
VPS4A-204ENST00000566354 BLMP54132 1417 aaPredicted RBP17.44■□□□□ 0.38
VPS4A-204ENST00000566354 MS4A1P11836 297 aa17.44■□□□□ 0.38
VPS4A-204ENST00000566354 QRICH2Q9H0J4 1663 aa17.44■□□□□ 0.38
VPS4A-204ENST00000566354 SLC26A8Q96RN1 970 aa17.43■□□□□ 0.38
VPS4A-204ENST00000566354 PANK3Q9H999 370 aa17.43■□□□□ 0.38
VPS4A-204ENST00000566354 SAFB2Q14151 953 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS4A-204ENST00000566354 CC2D1BQ5T0F9 858 aaKnown RBP17.42■□□□□ 0.38
VPS4A-204ENST00000566354 CDCA7LQ96GN5 454 aa17.42■□□□□ 0.38
VPS4A-204ENST00000566354 SBNO2Q9Y2G9 1366 aa17.4■□□□□ 0.38
VPS4A-204ENST00000566354 PDE4AP27815 886 aa17.4■□□□□ 0.38
VPS4A-204ENST00000566354 PRAM1Q96QH2 718 aa17.4■□□□□ 0.38
VPS4A-204ENST00000566354 MED14O60244 1454 aa17.39■□□□□ 0.37
VPS4A-204ENST00000566354 BACH2Q9BYV9 841 aa17.39■□□□□ 0.37
VPS4A-204ENST00000566354 ANKLE2Q86XL3 938 aa17.38■□□□□ 0.37
VPS4A-204ENST00000566354 RTL5Q5HYW3 569 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-204ENST00000566354 ANO8Q9HCE9 1232 aaPredicted RBP17.38■□□□□ 0.37
VPS4A-204ENST00000566354 AMER1Q5JTC6 1135 aaPredicted RBP17.37■□□□□ 0.37
VPS4A-204ENST00000566354 ABCC11Q96J66 1382 aa17.37■□□□□ 0.37
VPS4A-204ENST00000566354 NCBP3Q53F19 620 aaKnown RBP17.37■□□□□ 0.37
VPS4A-204ENST00000566354 WAPLQ7Z5K2 1190 aa17.37■□□□□ 0.37
VPS4A-204ENST00000566354 POGKQ9P215 609 aa17.37■□□□□ 0.37
VPS4A-204ENST00000566354 PLEKHH1Q9ULM0 1364 aa17.36■□□□□ 0.37
VPS4A-204ENST00000566354 DLC1Q96QB1 1528 aa17.35■□□□□ 0.37
VPS4A-204ENST00000566354 CDCA8Q53HL2 280 aa17.35■□□□□ 0.37
VPS4A-204ENST00000566354 TBX22Q9Y458 520 aa17.35■□□□□ 0.37
VPS4A-204ENST00000566354 MINK1Q8N4C8 1332 aaPredicted RBP17.35■□□□□ 0.37
VPS4A-204ENST00000566354 PTPRUQ92729 1446 aa17.34■□□□□ 0.37
VPS4A-204ENST00000566354 TULP4Q9NRJ4 1543 aa17.34■□□□□ 0.37
VPS4A-204ENST00000566354 KNDC1Q76NI1 1749 aa17.33■□□□□ 0.37
VPS4A-204ENST00000566354 PLIN1O60240 522 aa17.33■□□□□ 0.36
VPS4A-204ENST00000566354 NPM2Q86SE8 214 aaKnown RBP17.33■□□□□ 0.36
VPS4A-204ENST00000566354 TECPR2O15040 1411 aa17.33■□□□□ 0.36
VPS4A-204ENST00000566354 MYOM1P52179 1685 aa17.32■□□□□ 0.36
VPS4A-204ENST00000566354 NCKAP5LQ9HCH0 1330 aa17.32■□□□□ 0.36
VPS4A-204ENST00000566354 CRBNQ96SW2 442 aa17.32■□□□□ 0.36
VPS4A-204ENST00000566354 ADAMTS8Q9UP79 889 aa17.32■□□□□ 0.36
VPS4A-204ENST00000566354 DIP2AQ14689 1571 aa17.32■□□□□ 0.36
VPS4A-204ENST00000566354 ROBO2Q9HCK4 1378 aa17.31■□□□□ 0.36
VPS4A-204ENST00000566354 CPS1P31327 1500 aa17.31■□□□□ 0.36
VPS4A-204ENST00000566354 KNSTRNQ9Y448 316 aa17.31■□□□□ 0.36
VPS4A-204ENST00000566354 EVC2Q86UK5 1308 aa17.3■□□□□ 0.36
VPS4A-204ENST00000566354 AMOTL2Q9Y2J4 779 aa17.3■□□□□ 0.36
VPS4A-204ENST00000566354 HSPA2P54652 639 aa17.3■□□□□ 0.36
VPS4A-204ENST00000566354 CABP2Q9NPB3 220 aa17.3■□□□□ 0.36
VPS4A-204ENST00000566354 NPHP4O75161 1426 aaPredicted RBP17.29■□□□□ 0.36
VPS4A-204ENST00000566354 FAM135BQ49AJ0 1406 aa17.28■□□□□ 0.36
VPS4A-204ENST00000566354 PPP2R1AP30153 589 aa17.28■□□□□ 0.36
VPS4A-204ENST00000566354 WDR43Q15061 677 aaKnown RBP eCLIP17.27■□□□□ 0.36
VPS4A-204ENST00000566354 SIRT1Q96EB6 747 aa17.27■□□□□ 0.36
VPS4A-204ENST00000566354 USP35Q9P2H5 1018 aa17.27■□□□□ 0.36
VPS4A-204ENST00000566354 SRPK2P78362 688 aaKnown RBP17.26■□□□□ 0.35
VPS4A-204ENST00000566354 LMTK3Q96Q04 1460 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 XRN1Q8IZH2 1706 aaKnown RBP17.25■□□□□ 0.35
VPS4A-204ENST00000566354 KCNA6P17658 529 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 DUSP27Q5VZP5 1158 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 DDRGK1Q96HY6 314 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 CDK19Q9BWU1 502 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 SLC12A5Q9H2X9 1139 aa17.25■□□□□ 0.35
VPS4A-204ENST00000566354 ZNF521Q96K83 1311 aa17.24■□□□□ 0.35
VPS4A-204ENST00000566354 PIK3R4Q99570 1358 aa17.24■□□□□ 0.35
VPS4A-204ENST00000566354 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.23■□□□□ 0.35
VPS4A-204ENST00000566354 KDM2BQ8NHM5 1336 aa17.23■□□□□ 0.35
VPS4A-204ENST00000566354 CHD2O14647 1828 aaKnown RBP17.23■□□□□ 0.35
VPS4A-204ENST00000566354 PPM1GO15355 546 aaPredicted RBP17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms