RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, humanhuman

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-208ENST00000565995 ATAD2Q6PL18 1390 aa19.44■□□□□ 0.7
RNF40-208ENST00000565995 ATRNO75882 1429 aa19.43■□□□□ 0.7
RNF40-208ENST00000565995 ADAMTS2O95450 1211 aa19.43■□□□□ 0.7
RNF40-208ENST00000565995 IFT172Q9UG01 1749 aa19.42■□□□□ 0.7
RNF40-208ENST00000565995 USP21Q9UK80 565 aa19.42■□□□□ 0.7
RNF40-208ENST00000565995 TRPC5Q9UL62 973 aaPredicted RBP19.42■□□□□ 0.7
RNF40-208ENST00000565995 RRBP1Q9P2E9 1410 aaKnown RBP19.42■□□□□ 0.7
RNF40-208ENST00000565995 MYOM2P54296 1465 aa19.41■□□□□ 0.7
RNF40-208ENST00000565995 PXDNQ92626 1479 aa19.4■□□□□ 0.7
RNF40-208ENST00000565995 KNDC1Q76NI1 1749 aa19.39■□□□□ 0.7
RNF40-208ENST00000565995 BCL9LQ86UU0 1499 aa19.39■□□□□ 0.69
RNF40-208ENST00000565995 BRWD3Q6RI45 1802 aa19.39■□□□□ 0.69
RNF40-208ENST00000565995 RGPD8O14715 1765 aaPredicted RBP19.38■□□□□ 0.69
RNF40-208ENST00000565995 FMN2Q9NZ56 1722 aa19.37■□□□□ 0.69
RNF40-208ENST00000565995 NPHP3Q7Z494 1330 aa19.36■□□□□ 0.69
RNF40-208ENST00000565995 CCDC125Q86Z20 511 aa19.36■□□□□ 0.69
RNF40-208ENST00000565995 TECPR2O15040 1411 aa19.34■□□□□ 0.69
RNF40-208ENST00000565995 KIF1AQ12756 1690 aa19.33■□□□□ 0.69
RNF40-208ENST00000565995 FOXD1Q16676 465 aa19.33■□□□□ 0.68
RNF40-208ENST00000565995 ESCO1Q5FWF5 840 aa19.31■□□□□ 0.68
RNF40-208ENST00000565995 PPARGC1BQ86YN6 1023 aaKnown RBP19.31■□□□□ 0.68
RNF40-208ENST00000565995 LRPPRCP42704 1394 aaKnown RBP19.31■□□□□ 0.68
RNF40-208ENST00000565995 GLI3P10071 1580 aa19.3■□□□□ 0.68
RNF40-208ENST00000565995 NWD2Q9ULI1 1742 aa19.3■□□□□ 0.68
RNF40-208ENST00000565995 GJD4Q96KN9 370 aaPredicted RBP19.29■□□□□ 0.68
RNF40-208ENST00000565995 ZRANB1Q9UGI0 708 aa19.29■□□□□ 0.68
RNF40-208ENST00000565995 SLIT2O94813 1529 aa19.29■□□□□ 0.68
RNF40-208ENST00000565995 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
RNF40-208ENST00000565995 USP32Q8NFA0 1604 aa19.28■□□□□ 0.68
RNF40-208ENST00000565995 ABCC11Q96J66 1382 aa19.28■□□□□ 0.68
RNF40-208ENST00000565995 SPATA31E1Q6ZUB1 1445 aa19.27■□□□□ 0.68
RNF40-208ENST00000565995 FOXO3O43524 673 aa19.27■□□□□ 0.68
RNF40-208ENST00000565995 ABCA3Q99758 1704 aa19.26■□□□□ 0.67
RNF40-208ENST00000565995 ADGRF5Q8IZF2 1346 aa19.25■□□□□ 0.67
RNF40-208ENST00000565995 PLCH1Q4KWH8 1693 aa19.25■□□□□ 0.67
RNF40-208ENST00000565995 SPATA31A3Q5VYP0 1347 aa19.25■□□□□ 0.67
RNF40-208ENST00000565995 ANKRD30BQ9BXX2 1392 aa19.24■□□□□ 0.67
RNF40-208ENST00000565995 UNC5CLQ8IV45 518 aa19.24■□□□□ 0.67
RNF40-208ENST00000565995 RALGAPBQ86X10 1494 aa19.23■□□□□ 0.67
RNF40-208ENST00000565995 WAPLQ7Z5K2 1190 aa19.23■□□□□ 0.67
RNF40-208ENST00000565995 SIRT1Q96EB6 747 aa19.23■□□□□ 0.67
RNF40-208ENST00000565995 CCDC144AA2RUR9 1427 aa19.22■□□□□ 0.67
RNF40-208ENST00000565995 PIK3C2GO75747 1445 aa19.22■□□□□ 0.67
RNF40-208ENST00000565995 BLMP54132 1417 aaPredicted RBP19.21■□□□□ 0.67
RNF40-208ENST00000565995 XPCQ01831 940 aaPredicted RBP19.21■□□□□ 0.67
RNF40-208ENST00000565995 PLEKHH1Q9ULM0 1364 aa19.19■□□□□ 0.66
RNF40-208ENST00000565995 YTHDC2Q9H6S0 1430 aaKnown RBP19.19■□□□□ 0.66
RNF40-208ENST00000565995 ONECUT3O60422 494 aaPredicted RBP19.19■□□□□ 0.66
RNF40-208ENST00000565995 STK26Q9P289 416 aa19.18■□□□□ 0.66
RNF40-208ENST00000565995 LRP5O75197 1615 aa19.18■□□□□ 0.66
RNF40-208ENST00000565995 TMEM132EQ6IEE7 984 aa19.17■□□□□ 0.66
RNF40-208ENST00000565995 KRT28Q7Z3Y7 464 aa19.17■□□□□ 0.66
RNF40-208ENST00000565995 NRAPQ86VF7 1730 aa19.17■□□□□ 0.66
RNF40-208ENST00000565995 NUTM2FA1L443 756 aa19.16■□□□□ 0.66
RNF40-208ENST00000565995 TNS3Q68CZ2 1445 aa19.16■□□□□ 0.66
RNF40-208ENST00000565995 NRXN1Q9ULB1 1477 aa19.16■□□□□ 0.66
RNF40-208ENST00000565995 TRPM3Q9HCF6 1732 aaPredicted RBP19.15■□□□□ 0.66
RNF40-208ENST00000565995 RGL3Q3MIN7 710 aa19.15■□□□□ 0.66
RNF40-208ENST00000565995 VPS72Q15906 364 aa19.14■□□□□ 0.65
RNF40-208ENST00000565995 SBNO1A3KN83 1393 aa19.14■□□□□ 0.65
RNF40-208ENST00000565995 PSME1Q06323 249 aa19.13■□□□□ 0.65
RNF40-208ENST00000565995 C14orf93Q9H972 538 aaKnown RBP19.13■□□□□ 0.65
RNF40-208ENST00000565995 ALS2Q96Q42 1657 aa19.13■□□□□ 0.65
RNF40-208ENST00000565995 MPHOSPH9Q99550 1183 aa19.12■□□□□ 0.65
RNF40-208ENST00000565995 PHF8Q9UPP1 1060 aa19.12■□□□□ 0.65
RNF40-208ENST00000565995 CRYBG1Q9Y4K1 1723 aa19.11■□□□□ 0.65
RNF40-208ENST00000565995 ADGRB2O60241 1585 aa19.11■□□□□ 0.65
RNF40-208ENST00000565995 SEPT12Q8IYM1 358 aa19.11■□□□□ 0.65
RNF40-208ENST00000565995 DLC1Q96QB1 1528 aa19.1■□□□□ 0.65
RNF40-208ENST00000565995 RGPD1P0DJD0 1748 aa19.1■□□□□ 0.65
RNF40-208ENST00000565995 COL14A1Q05707 1796 aaKnown RBP19.09■□□□□ 0.65
RNF40-208ENST00000565995 ARHGEF10O15013 1369 aa19.08■□□□□ 0.65
RNF40-208ENST00000565995 DHX57Q6P158 1386 aaKnown RBP19.08■□□□□ 0.65
RNF40-208ENST00000565995 DEFB132Q7Z7B7 95 aa19.08■□□□□ 0.64
RNF40-208ENST00000565995 CABLES1Q8TDN4 633 aa19.07■□□□□ 0.64
RNF40-208ENST00000565995 ANKARQ7Z5J8 1434 aa19.07■□□□□ 0.64
RNF40-208ENST00000565995 ACIN1Q9UKV3 1341 aaKnown RBP19.06■□□□□ 0.64
RNF40-208ENST00000565995 SF3B2Q13435 895 aaKnown RBP19.06■□□□□ 0.64
RNF40-208ENST00000565995 KRT27Q7Z3Y8 459 aa19.06■□□□□ 0.64
RNF40-208ENST00000565995 FAM83GA6ND36 823 aa19.05■□□□□ 0.64
RNF40-208ENST00000565995 TNS1Q9HBL0 1735 aaKnown RBP19.03■□□□□ 0.64
RNF40-208ENST00000565995 HAP1P54257 671 aaPredicted RBP19.03■□□□□ 0.64
RNF40-208ENST00000565995 CFAP70Q5T0N1 1121 aa19.03■□□□□ 0.64
RNF40-208ENST00000565995 ADGRB1O14514 1584 aa19.02■□□□□ 0.64
RNF40-208ENST00000565995 THSD7AQ9UPZ6 1657 aa19.02■□□□□ 0.64
RNF40-208ENST00000565995 ITSN1Q15811 1721 aa19.02■□□□□ 0.63
RNF40-208ENST00000565995 PRAM1Q96QH2 718 aa19.01■□□□□ 0.63
RNF40-208ENST00000565995 CCDC9Q9Y3X0 531 aaKnown RBP18.99■□□□□ 0.63
RNF40-208ENST00000565995 BAG6P46379 1132 aa18.98■□□□□ 0.63
RNF40-208ENST00000565995 TULP4Q9NRJ4 1543 aa18.97■□□□□ 0.63
RNF40-208ENST00000565995 LMOD2Q6P5Q4 547 aa18.97■□□□□ 0.63
RNF40-208ENST00000565995 PMFBP1Q8TBY8 1022 aa18.97■□□□□ 0.63
RNF40-208ENST00000565995 DISP2A7MBM2 1401 aa18.97■□□□□ 0.63
RNF40-208ENST00000565995 BTG4Q9NY30 223 aa18.96■□□□□ 0.63
RNF40-208ENST00000565995 EIF3AQ14152 1382 aaKnown RBP18.95■□□□□ 0.62
RNF40-208ENST00000565995 ARHGEF28Q8N1W1 1705 aaKnown RBP18.95■□□□□ 0.62
RNF40-208ENST00000565995 HRCP23327 699 aa18.95■□□□□ 0.62
RNF40-208ENST00000565995 POGKQ9P215 609 aa18.95■□□□□ 0.62
RNF40-208ENST00000565995 PHRF1Q9P1Y6 1649 aaKnown RBP18.95■□□□□ 0.62
RNF40-208ENST00000565995 SPATA31A5Q5VU36 1347 aa18.95■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms