RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 TULP4Q9NRJ4 1543 aa25.93■■□□□ 1.74
COMMD4-213ENST00000565834 EVC2Q86UK5 1308 aa25.93■■□□□ 1.74
COMMD4-213ENST00000565834 ROBO2Q9HCK4 1378 aa25.93■■□□□ 1.74
COMMD4-213ENST00000565834 MINK1Q8N4C8 1332 aaPredicted RBP25.92■■□□□ 1.74
COMMD4-213ENST00000565834 PTCH1Q13635 1447 aa25.91■■□□□ 1.74
COMMD4-213ENST00000565834 MYOM1P52179 1685 aa25.89■■□□□ 1.74
COMMD4-213ENST00000565834 STRCQ7RTU9 1775 aa25.87■■□□□ 1.73
COMMD4-213ENST00000565834 PUS7Q96PZ0 661 aaKnown RBP25.86■■□□□ 1.73
COMMD4-213ENST00000565834 KCNA6P17658 529 aa25.84■■□□□ 1.73
COMMD4-213ENST00000565834 SIPA1L2Q9P2F8 1722 aaPredicted RBP25.84■■□□□ 1.73
COMMD4-213ENST00000565834 MIER1Q8N108 512 aa25.83■■□□□ 1.73
COMMD4-213ENST00000565834 ADGRB2O60241 1585 aa25.83■■□□□ 1.72
COMMD4-213ENST00000565834 NWD1Q149M9 1564 aa25.83■■□□□ 1.72
COMMD4-213ENST00000565834 SRPK2P78362 688 aaKnown RBP25.82■■□□□ 1.72
COMMD4-213ENST00000565834 CABP2Q9NPB3 220 aa25.8■■□□□ 1.72
COMMD4-213ENST00000565834 CDK19Q9BWU1 502 aa25.8■■□□□ 1.72
COMMD4-213ENST00000565834 ANP32CO43423 234 aa25.79■■□□□ 1.72
COMMD4-213ENST00000565834 ATAD2Q6PL18 1390 aa25.78■■□□□ 1.72
COMMD4-213ENST00000565834 PANK3Q9H999 370 aa25.78■■□□□ 1.72
COMMD4-213ENST00000565834 WASLO00401 505 aaPredicted RBP25.77■■□□□ 1.72
COMMD4-213ENST00000565834 TMC1Q8TDI8 760 aa25.74■■□□□ 1.71
COMMD4-213ENST00000565834 NINLQ9Y2I6 1382 aa25.73■■□□□ 1.71
COMMD4-213ENST00000565834 NKTRP30414 1462 aaKnown RBP25.73■■□□□ 1.71
COMMD4-213ENST00000565834 NALCNQ8IZF0 1738 aa25.71■■□□□ 1.71
COMMD4-213ENST00000565834 SLC12A5Q9H2X9 1139 aa25.71■■□□□ 1.71
COMMD4-213ENST00000565834 STRCP1A6NGW2 1772 aa25.7■■□□□ 1.71
COMMD4-213ENST00000565834 PER1O15534 1290 aaPredicted RBP25.7■■□□□ 1.7
COMMD4-213ENST00000565834 ATP7BP35670 1465 aa25.66■■□□□ 1.7
COMMD4-213ENST00000565834 KNSTRNQ9Y448 316 aa25.66■■□□□ 1.7
COMMD4-213ENST00000565834 ANKRD36BQ8N2N9 1353 aa25.66■■□□□ 1.7
COMMD4-213ENST00000565834 ADGRL3Q9HAR2 1447 aa25.66■■□□□ 1.7
COMMD4-213ENST00000565834 CDC42BPGQ6DT37 1551 aa25.65■■□□□ 1.7
COMMD4-213ENST00000565834 PROSER2Q86WR7 435 aaPredicted RBP25.65■■□□□ 1.7
COMMD4-213ENST00000565834 NUDT16Q96DE0 195 aaKnown RBP25.65■■□□□ 1.7
COMMD4-213ENST00000565834 PRKRIP1Q9H875 184 aaPredicted RBP25.65■■□□□ 1.7
COMMD4-213ENST00000565834 FMN2Q9NZ56 1722 aa25.64■■□□□ 1.7
COMMD4-213ENST00000565834 DMRT2Q9Y5R5 561 aa25.64■■□□□ 1.69
COMMD4-213ENST00000565834 TOPAZ1Q8N9V7 1692 aa25.63■■□□□ 1.69
COMMD4-213ENST00000565834 RBM33Q96EV2 1170 aaKnown RBP25.63■■□□□ 1.69
COMMD4-213ENST00000565834 PPIP5K1Q6PFW1 1433 aa25.63■■□□□ 1.69
COMMD4-213ENST00000565834 ITSN1Q15811 1721 aa25.62■■□□□ 1.69
COMMD4-213ENST00000565834 PRR36Q9H6K5 1346 aa25.62■■□□□ 1.69
COMMD4-213ENST00000565834 CABP1Q9NZU7 370 aa25.62■■□□□ 1.69
COMMD4-213ENST00000565834 USP32Q8NFA0 1604 aa25.62■■□□□ 1.69
COMMD4-213ENST00000565834 CNGB1Q14028 1251 aaPredicted RBP25.61■■□□□ 1.69
COMMD4-213ENST00000565834 TERF2IPQ9NYB0 399 aa25.61■■□□□ 1.69
COMMD4-213ENST00000565834 CCDC61Q9Y6R9 512 aa25.61■■□□□ 1.69
COMMD4-213ENST00000565834 KTN1Q86UP2 1357 aaKnown RBP25.61■■□□□ 1.69
COMMD4-213ENST00000565834 C14orf37Q86TY3 774 aa25.61■■□□□ 1.69
COMMD4-213ENST00000565834 CARD14Q9BXL6 1004 aa25.61■■□□□ 1.69
COMMD4-213ENST00000565834 CD163L1Q9NR16 1453 aa25.6■■□□□ 1.69
COMMD4-213ENST00000565834 NSD3Q9BZ95 1437 aa25.6■■□□□ 1.69
COMMD4-213ENST00000565834 A0A1W2PP64 1363 aa25.6■■□□□ 1.69
COMMD4-213ENST00000565834 RGPD8O14715 1765 aaPredicted RBP25.59■■□□□ 1.69
COMMD4-213ENST00000565834 HDGFL2Q7Z4V5 671 aaPredicted RBP25.58■■□□□ 1.69
COMMD4-213ENST00000565834 ANKARQ7Z5J8 1434 aa25.58■■□□□ 1.69
COMMD4-213ENST00000565834 NUTM2FA1L443 756 aa25.58■■□□□ 1.68
COMMD4-213ENST00000565834 CCER2I3L3R5 266 aa25.57■■□□□ 1.68
COMMD4-213ENST00000565834 AMER1Q5JTC6 1135 aaPredicted RBP25.57■■□□□ 1.68
COMMD4-213ENST00000565834 NPC1L1Q9UHC9 1359 aa25.57■■□□□ 1.68
COMMD4-213ENST00000565834 CC2D1BQ5T0F9 858 aaKnown RBP25.56■■□□□ 1.68
COMMD4-213ENST00000565834 NCOA3Q9Y6Q9 1424 aa25.56■■□□□ 1.68
COMMD4-213ENST00000565834 TMEM94Q12767 1356 aa25.56■■□□□ 1.68
COMMD4-213ENST00000565834 RALBP1Q15311 655 aa25.55■■□□□ 1.68
COMMD4-213ENST00000565834 AKAP12Q02952 1782 aa25.55■■□□□ 1.68
COMMD4-213ENST00000565834 ZNF335Q9H4Z2 1342 aaPredicted RBP25.55■■□□□ 1.68
COMMD4-213ENST00000565834 PARD3Q8TEW0 1356 aa25.54■■□□□ 1.68
COMMD4-213ENST00000565834 CPSF1Q10570 1443 aaKnown RBP25.53■■□□□ 1.68
COMMD4-213ENST00000565834 XIRP1Q702N8 1843 aaKnown RBP25.52■■□□□ 1.68
COMMD4-213ENST00000565834 MON2Q7Z3U7 1717 aa25.52■■□□□ 1.68
COMMD4-213ENST00000565834 CGNL1Q0VF96 1302 aa25.51■■□□□ 1.67
COMMD4-213ENST00000565834 PLEKHG3A1L390 1219 aa25.51■■□□□ 1.67
COMMD4-213ENST00000565834 C19orf44Q9H6X5 657 aa25.51■■□□□ 1.67
COMMD4-213ENST00000565834 LRRC7Q96NW7 1537 aa25.49■■□□□ 1.67
COMMD4-213ENST00000565834 DCCP43146 1447 aa25.48■■□□□ 1.67
COMMD4-213ENST00000565834 MYBBP1AQ9BQG0 1328 aaKnown RBP25.48■■□□□ 1.67
COMMD4-213ENST00000565834 KIF20BQ96Q89 1820 aa25.47■■□□□ 1.67
COMMD4-213ENST00000565834 ZNF692Q9BU19 519 aaPredicted RBP25.47■■□□□ 1.67
COMMD4-213ENST00000565834 EDC4Q6P2E9 1401 aaKnown RBP25.47■■□□□ 1.67
COMMD4-213ENST00000565834 ACEP12821 1306 aa25.46■■□□□ 1.67
COMMD4-213ENST00000565834 NSD2O96028 1365 aa25.46■■□□□ 1.67
COMMD4-213ENST00000565834 MSH6P52701 1360 aa25.45■■□□□ 1.66
COMMD4-213ENST00000565834 ANKRD26Q9UPS8 1709 aa25.44■■□□□ 1.66
COMMD4-213ENST00000565834 PMFBP1Q8TBY8 1022 aa25.44■■□□□ 1.66
COMMD4-213ENST00000565834 ATF3P18847 181 aa25.43■■□□□ 1.66
COMMD4-213ENST00000565834 POLR3AO14802 1390 aaPredicted RBP25.43■■□□□ 1.66
COMMD4-213ENST00000565834 NRKQ7Z2Y5 1582 aa25.42■■□□□ 1.66
COMMD4-213ENST00000565834 NGDNQ8NEJ9 315 aaKnown RBP25.42■■□□□ 1.66
COMMD4-213ENST00000565834 USP6P35125 1406 aa25.41■■□□□ 1.66
COMMD4-213ENST00000565834 PHF8Q9UPP1 1060 aa25.4■■□□□ 1.66
COMMD4-213ENST00000565834 CADPS2Q86UW7 1296 aa25.39■■□□□ 1.66
COMMD4-213ENST00000565834 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.39■■□□□ 1.66
COMMD4-213ENST00000565834 MRS2Q9HD23 443 aa25.39■■□□□ 1.66
COMMD4-213ENST00000565834 ESCO1Q5FWF5 840 aa25.39■■□□□ 1.65
COMMD4-213ENST00000565834 MORC1Q86VD1 984 aa25.39■■□□□ 1.65
COMMD4-213ENST00000565834 NLRP13Q86W25 1043 aa25.39■■□□□ 1.65
COMMD4-213ENST00000565834 C1orf167Q5SNV9 1468 aa25.38■■□□□ 1.65
COMMD4-213ENST00000565834 MST1RQ04912 1400 aa25.38■■□□□ 1.65
COMMD4-213ENST00000565834 FYB1O15117 783 aa25.38■■□□□ 1.65
COMMD4-213ENST00000565834 CCDC184Q52MB2 194 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms