RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RBM6P78332 1123 aaKnown RBP25.17■■□□□ 1.62
CLN3-211ENST00000564091 TMEM132EQ6IEE7 984 aa25.16■■□□□ 1.62
CLN3-211ENST00000564091 SPATA31E1Q6ZUB1 1445 aa25.15■■□□□ 1.62
CLN3-211ENST00000564091 NUTM2FA1L443 756 aa25.14■■□□□ 1.62
CLN3-211ENST00000564091 CDK12Q9NYV4 1490 aaPredicted RBP25.14■■□□□ 1.61
CLN3-211ENST00000564091 FOXO3O43524 673 aa25.12■■□□□ 1.61
CLN3-211ENST00000564091 XPCQ01831 940 aaPredicted RBP25.12■■□□□ 1.61
CLN3-211ENST00000564091 ANKRD30BQ9BXX2 1392 aa25.12■■□□□ 1.61
CLN3-211ENST00000564091 LRPPRCP42704 1394 aaKnown RBP25.11■■□□□ 1.61
CLN3-211ENST00000564091 USP21Q9UK80 565 aa25.11■■□□□ 1.61
CLN3-211ENST00000564091 NPHP3Q7Z494 1330 aa25.11■■□□□ 1.61
CLN3-211ENST00000564091 PLEKHH1Q9ULM0 1364 aa25.1■■□□□ 1.61
CLN3-211ENST00000564091 RGS12O14924 1447 aa25.1■■□□□ 1.61
CLN3-211ENST00000564091 PPLO60437 1756 aa25.09■■□□□ 1.61
CLN3-211ENST00000564091 ABCC11Q96J66 1382 aa25.08■■□□□ 1.61
CLN3-211ENST00000564091 FNBP4Q8N3X1 1017 aaPredicted RBP25.07■■□□□ 1.6
CLN3-211ENST00000564091 TECPR2O15040 1411 aa25.06■■□□□ 1.6
CLN3-211ENST00000564091 LAMC1P11047 1609 aa25.05■■□□□ 1.6
CLN3-211ENST00000564091 TRPC5Q9UL62 973 aaPredicted RBP25.05■■□□□ 1.6
CLN3-211ENST00000564091 PIK3C2GO75747 1445 aa25.04■■□□□ 1.6
CLN3-211ENST00000564091 CDC42BPGQ6DT37 1551 aa25.03■■□□□ 1.6
CLN3-211ENST00000564091 C14orf93Q9H972 538 aaKnown RBP25.02■■□□□ 1.6
CLN3-211ENST00000564091 YTHDC2Q9H6S0 1430 aaKnown RBP25.02■■□□□ 1.6
CLN3-211ENST00000564091 CFAP70Q5T0N1 1121 aa25.01■■□□□ 1.59
CLN3-211ENST00000564091 PXDNQ92626 1479 aa25.01■■□□□ 1.59
CLN3-211ENST00000564091 MYOM2P54296 1465 aa25■■□□□ 1.59
CLN3-211ENST00000564091 SIRT1Q96EB6 747 aa24.98■■□□□ 1.59
CLN3-211ENST00000564091 ATRNO75882 1429 aa24.96■■□□□ 1.59
CLN3-211ENST00000564091 SAFB2Q14151 953 aaKnown RBP eCLIP24.96■■□□□ 1.59
CLN3-211ENST00000564091 ACIN1Q9UKV3 1341 aaKnown RBP24.95■■□□□ 1.58
CLN3-211ENST00000564091 KRT28Q7Z3Y7 464 aa24.95■■□□□ 1.58
CLN3-211ENST00000564091 SPATA31A3Q5VYP0 1347 aa24.94■■□□□ 1.58
CLN3-211ENST00000564091 DHX57Q6P158 1386 aaKnown RBP24.93■■□□□ 1.58
CLN3-211ENST00000564091 PRAM1Q96QH2 718 aa24.93■■□□□ 1.58
CLN3-211ENST00000564091 BCL9LQ86UU0 1499 aa24.93■■□□□ 1.58
CLN3-211ENST00000564091 PHF8Q9UPP1 1060 aa24.92■■□□□ 1.58
CLN3-211ENST00000564091 COL22A1Q8NFW1 1626 aaPredicted RBP24.92■■□□□ 1.58
CLN3-211ENST00000564091 ATAD2Q6PL18 1390 aa24.92■■□□□ 1.58
CLN3-211ENST00000564091 SRCAPQ6ZRS2 3230 aa24.91■■□□□ 1.58
CLN3-211ENST00000564091 RAB3GAP2Q9H2M9 1393 aa24.91■■□□□ 1.58
CLN3-211ENST00000564091 NRXN1Q9ULB1 1477 aa24.9■■□□□ 1.58
CLN3-211ENST00000564091 GJD4Q96KN9 370 aaPredicted RBP24.9■■□□□ 1.58
CLN3-211ENST00000564091 PLEKHG5O94827 1062 aa24.89■■□□□ 1.58
CLN3-211ENST00000564091 IFT172Q9UG01 1749 aa24.89■■□□□ 1.57
CLN3-211ENST00000564091 POGKQ9P215 609 aa24.88■■□□□ 1.57
CLN3-211ENST00000564091 UNC5CLQ8IV45 518 aa24.87■■□□□ 1.57
CLN3-211ENST00000564091 CABLES1Q8TDN4 633 aa24.87■■□□□ 1.57
CLN3-211ENST00000564091 PSME1Q06323 249 aa24.86■■□□□ 1.57
CLN3-211ENST00000564091 KNDC1Q76NI1 1749 aa24.84■■□□□ 1.57
CLN3-211ENST00000564091 HAP1P54257 671 aaPredicted RBP24.84■■□□□ 1.57
CLN3-211ENST00000564091 LMOD2Q6P5Q4 547 aa24.84■■□□□ 1.57
CLN3-211ENST00000564091 PMFBP1Q8TBY8 1022 aa24.84■■□□□ 1.57
CLN3-211ENST00000564091 KDM2AQ9Y2K7 1162 aa24.84■■□□□ 1.57
CLN3-211ENST00000564091 TRAK1Q9UPV9 953 aa24.83■■□□□ 1.57
CLN3-211ENST00000564091 HIRIP3Q9BW71 556 aaPredicted RBP24.82■■□□□ 1.56
CLN3-211ENST00000564091 FMN2Q9NZ56 1722 aa24.81■■□□□ 1.56
CLN3-211ENST00000564091 TNS3Q68CZ2 1445 aa24.8■■□□□ 1.56
CLN3-211ENST00000564091 EP400Q96L91 3159 aa24.8■■□□□ 1.56
CLN3-211ENST00000564091 DCAF11Q8TEB1 546 aa24.8■■□□□ 1.56
CLN3-211ENST00000564091 SLIT2O94813 1529 aa24.8■■□□□ 1.56
CLN3-211ENST00000564091 SBNO1A3KN83 1393 aa24.79■■□□□ 1.56
CLN3-211ENST00000564091 MINK1Q8N4C8 1332 aaPredicted RBP24.78■■□□□ 1.56
CLN3-211ENST00000564091 RALGAPBQ86X10 1494 aa24.77■■□□□ 1.56
CLN3-211ENST00000564091 KIF1AQ12756 1690 aa24.75■■□□□ 1.55
CLN3-211ENST00000564091 CCDC125Q86Z20 511 aa24.74■■□□□ 1.55
CLN3-211ENST00000564091 ANKARQ7Z5J8 1434 aa24.74■■□□□ 1.55
CLN3-211ENST00000564091 DLC1Q96QB1 1528 aa24.74■■□□□ 1.55
CLN3-211ENST00000564091 ADGRB1O14514 1584 aa24.73■■□□□ 1.55
CLN3-211ENST00000564091 ARHGEF10O15013 1369 aa24.73■■□□□ 1.55
CLN3-211ENST00000564091 PRR36Q9H6K5 1346 aa24.73■■□□□ 1.55
CLN3-211ENST00000564091 FAM83GA6ND36 823 aa24.73■■□□□ 1.55
CLN3-211ENST00000564091 VPS72Q15906 364 aa24.73■■□□□ 1.55
CLN3-211ENST00000564091 CCDC9Q9Y3X0 531 aaKnown RBP24.73■■□□□ 1.55
CLN3-211ENST00000564091 SEPT12Q8IYM1 358 aa24.72■■□□□ 1.55
CLN3-211ENST00000564091 WASLO00401 505 aaPredicted RBP24.71■■□□□ 1.55
CLN3-211ENST00000564091 ZRANB1Q9UGI0 708 aa24.71■■□□□ 1.55
CLN3-211ENST00000564091 USP32Q8NFA0 1604 aa24.7■■□□□ 1.54
CLN3-211ENST00000564091 GLI3P10071 1580 aa24.69■■□□□ 1.54
CLN3-211ENST00000564091 GPRASP1Q5JY77 1395 aa24.67■■□□□ 1.54
CLN3-211ENST00000564091 HRCP23327 699 aa24.67■■□□□ 1.54
CLN3-211ENST00000564091 STAC3Q96MF2 364 aa24.67■■□□□ 1.54
CLN3-211ENST00000564091 MARF1Q9Y4F3 1742 aaKnown RBP24.66■■□□□ 1.54
CLN3-211ENST00000564091 ONECUT3O60422 494 aaPredicted RBP24.66■■□□□ 1.54
CLN3-211ENST00000564091 NGDNQ8NEJ9 315 aaKnown RBP24.66■■□□□ 1.54
CLN3-211ENST00000564091 EIF3AQ14152 1382 aaKnown RBP24.65■■□□□ 1.54
CLN3-211ENST00000564091 RGPD8O14715 1765 aaPredicted RBP24.65■■□□□ 1.54
CLN3-211ENST00000564091 DEFB132Q7Z7B7 95 aa24.64■■□□□ 1.54
CLN3-211ENST00000564091 BTG4Q9NY30 223 aa24.64■■□□□ 1.54
CLN3-211ENST00000564091 ADGRB2O60241 1585 aa24.63■■□□□ 1.53
CLN3-211ENST00000564091 PAK3O75914 559 aaPredicted RBP24.63■■□□□ 1.53
CLN3-211ENST00000564091 BLMP54132 1417 aaPredicted RBP24.62■■□□□ 1.53
CLN3-211ENST00000564091 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.62■■□□□ 1.53
CLN3-211ENST00000564091 KRT27Q7Z3Y8 459 aa24.62■■□□□ 1.53
CLN3-211ENST00000564091 A0A0G2JS52 829 aa24.61■■□□□ 1.53
CLN3-211ENST00000564091 MYT1Q01538 1121 aa24.61■■□□□ 1.53
CLN3-211ENST00000564091 NUDT16Q96DE0 195 aaKnown RBP24.61■■□□□ 1.53
CLN3-211ENST00000564091 FAM98CQ17RN3 349 aaKnown RBP24.6■■□□□ 1.53
CLN3-211ENST00000564091 TULP4Q9NRJ4 1543 aa24.6■■□□□ 1.53
CLN3-211ENST00000564091 SF3B2Q13435 895 aaKnown RBP24.59■■□□□ 1.53
CLN3-211ENST00000564091 CDK19Q9BWU1 502 aa24.57■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms