RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 IFT172Q9UG01 1749 aa25.14■■□□□ 1.61
HDGFL3-203ENST00000563404 CDC42BPGQ6DT37 1551 aa25.14■■□□□ 1.61
HDGFL3-203ENST00000563404 RGS12O14924 1447 aa25.12■■□□□ 1.61
HDGFL3-203ENST00000563404 TECPR2O15040 1411 aa25.12■■□□□ 1.61
HDGFL3-203ENST00000563404 WAPLQ7Z5K2 1190 aa25.12■■□□□ 1.61
HDGFL3-203ENST00000563404 STK26Q9P289 416 aa25.12■■□□□ 1.61
HDGFL3-203ENST00000563404 ANKRD30BQ9BXX2 1392 aa25.12■■□□□ 1.61
HDGFL3-203ENST00000563404 LRPPRCP42704 1394 aaKnown RBP25.11■■□□□ 1.61
HDGFL3-203ENST00000563404 NGLY1Q96IV0 654 aa25.11■■□□□ 1.61
HDGFL3-203ENST00000563404 PLEKHH1Q9ULM0 1364 aa25.1■■□□□ 1.61
HDGFL3-203ENST00000563404 RBM6P78332 1123 aaKnown RBP25.1■■□□□ 1.61
HDGFL3-203ENST00000563404 ESCO1Q5FWF5 840 aa25.1■■□□□ 1.61
HDGFL3-203ENST00000563404 TMEM132EQ6IEE7 984 aa25.1■■□□□ 1.61
HDGFL3-203ENST00000563404 PIK3C2GO75747 1445 aa25.09■■□□□ 1.61
HDGFL3-203ENST00000563404 PXDNQ92626 1479 aa25.09■■□□□ 1.61
HDGFL3-203ENST00000563404 COL22A1Q8NFW1 1626 aaPredicted RBP25.08■■□□□ 1.61
HDGFL3-203ENST00000563404 ABCC11Q96J66 1382 aa25.08■■□□□ 1.61
HDGFL3-203ENST00000563404 NPHP3Q7Z494 1330 aa25.06■■□□□ 1.6
HDGFL3-203ENST00000563404 MYOM2P54296 1465 aa25.05■■□□□ 1.6
HDGFL3-203ENST00000563404 NUTM2FA1L443 756 aa25.05■■□□□ 1.6
HDGFL3-203ENST00000563404 XPCQ01831 940 aaPredicted RBP25.05■■□□□ 1.6
HDGFL3-203ENST00000563404 KNDC1Q76NI1 1749 aa25.05■■□□□ 1.6
HDGFL3-203ENST00000563404 FOXO3O43524 673 aa25.04■■□□□ 1.6
HDGFL3-203ENST00000563404 FNBP4Q8N3X1 1017 aaPredicted RBP25.04■■□□□ 1.6
HDGFL3-203ENST00000563404 USP21Q9UK80 565 aa25.04■■□□□ 1.6
HDGFL3-203ENST00000563404 YTHDC2Q9H6S0 1430 aaKnown RBP25.03■■□□□ 1.6
HDGFL3-203ENST00000563404 ATRNO75882 1429 aa24.99■■□□□ 1.59
HDGFL3-203ENST00000563404 C14orf93Q9H972 538 aaKnown RBP24.99■■□□□ 1.59
HDGFL3-203ENST00000563404 TRPC5Q9UL62 973 aaPredicted RBP24.99■■□□□ 1.59
HDGFL3-203ENST00000563404 NRXN1Q9ULB1 1477 aa24.99■■□□□ 1.59
HDGFL3-203ENST00000563404 FMN2Q9NZ56 1722 aa24.98■■□□□ 1.59
HDGFL3-203ENST00000563404 BCL9LQ86UU0 1499 aa24.96■■□□□ 1.59
HDGFL3-203ENST00000563404 CFAP70Q5T0N1 1121 aa24.96■■□□□ 1.59
HDGFL3-203ENST00000563404 SIRT1Q96EB6 747 aa24.96■■□□□ 1.59
HDGFL3-203ENST00000563404 MARF1Q9Y4F3 1742 aaKnown RBP24.93■■□□□ 1.58
HDGFL3-203ENST00000563404 SPATA31A3Q5VYP0 1347 aa24.92■■□□□ 1.58
HDGFL3-203ENST00000563404 RAB3GAP2Q9H2M9 1393 aa24.92■■□□□ 1.58
HDGFL3-203ENST00000563404 ACIN1Q9UKV3 1341 aaKnown RBP24.91■■□□□ 1.58
HDGFL3-203ENST00000563404 KIF1AQ12756 1690 aa24.91■■□□□ 1.58
HDGFL3-203ENST00000563404 DHX57Q6P158 1386 aaKnown RBP24.9■■□□□ 1.58
HDGFL3-203ENST00000563404 KRT28Q7Z3Y7 464 aa24.89■■□□□ 1.58
HDGFL3-203ENST00000563404 ATAD2Q6PL18 1390 aa24.89■■□□□ 1.57
HDGFL3-203ENST00000563404 RGPD8O14715 1765 aaPredicted RBP24.88■■□□□ 1.57
HDGFL3-203ENST00000563404 SAFB2Q14151 953 aaKnown RBP eCLIP24.87■■□□□ 1.57
HDGFL3-203ENST00000563404 PRAM1Q96QH2 718 aa24.87■■□□□ 1.57
HDGFL3-203ENST00000563404 PHF8Q9UPP1 1060 aa24.86■■□□□ 1.57
HDGFL3-203ENST00000563404 GJD4Q96KN9 370 aaPredicted RBP24.85■■□□□ 1.57
HDGFL3-203ENST00000563404 SLIT2O94813 1529 aa24.85■■□□□ 1.57
HDGFL3-203ENST00000563404 EP400Q96L91 3159 aa24.84■■□□□ 1.57
HDGFL3-203ENST00000563404 DLC1Q96QB1 1528 aa24.83■■□□□ 1.57
HDGFL3-203ENST00000563404 TNS3Q68CZ2 1445 aa24.83■■□□□ 1.57
HDGFL3-203ENST00000563404 ADGRB1O14514 1584 aa24.83■■□□□ 1.57
HDGFL3-203ENST00000563404 TNKS1BP1Q9C0C2 1729 aaKnown RBP24.83■■□□□ 1.57
HDGFL3-203ENST00000563404 USP32Q8NFA0 1604 aa24.82■■□□□ 1.56
HDGFL3-203ENST00000563404 UNC5CLQ8IV45 518 aa24.81■■□□□ 1.56
HDGFL3-203ENST00000563404 GLI3P10071 1580 aa24.8■■□□□ 1.56
HDGFL3-203ENST00000563404 CABLES1Q8TDN4 633 aa24.8■■□□□ 1.56
HDGFL3-203ENST00000563404 RALGAPBQ86X10 1494 aa24.79■■□□□ 1.56
HDGFL3-203ENST00000563404 SBNO1A3KN83 1393 aa24.79■■□□□ 1.56
HDGFL3-203ENST00000563404 PSME1Q06323 249 aa24.78■■□□□ 1.56
HDGFL3-203ENST00000563404 POGKQ9P215 609 aa24.78■■□□□ 1.56
HDGFL3-203ENST00000563404 ADGRB2O60241 1585 aa24.77■■□□□ 1.56
HDGFL3-203ENST00000563404 PMFBP1Q8TBY8 1022 aa24.77■■□□□ 1.56
HDGFL3-203ENST00000563404 TRAK1Q9UPV9 953 aa24.77■■□□□ 1.56
HDGFL3-203ENST00000563404 PLEKHG5O94827 1062 aa24.76■■□□□ 1.55
HDGFL3-203ENST00000563404 ANKARQ7Z5J8 1434 aa24.76■■□□□ 1.55
HDGFL3-203ENST00000563404 HIRIP3Q9BW71 556 aaPredicted RBP24.75■■□□□ 1.55
HDGFL3-203ENST00000563404 KDM2AQ9Y2K7 1162 aa24.75■■□□□ 1.55
HDGFL3-203ENST00000563404 SRCAPQ6ZRS2 3230 aa24.74■■□□□ 1.55
HDGFL3-203ENST00000563404 ABCA3Q99758 1704 aa24.74■■□□□ 1.55
HDGFL3-203ENST00000563404 PRR36Q9H6K5 1346 aa24.73■■□□□ 1.55
HDGFL3-203ENST00000563404 DCAF11Q8TEB1 546 aa24.73■■□□□ 1.55
HDGFL3-203ENST00000563404 ARHGEF10O15013 1369 aa24.72■■□□□ 1.55
HDGFL3-203ENST00000563404 MINK1Q8N4C8 1332 aaPredicted RBP24.72■■□□□ 1.55
HDGFL3-203ENST00000563404 HAP1P54257 671 aaPredicted RBP24.72■■□□□ 1.55
HDGFL3-203ENST00000563404 LMOD2Q6P5Q4 547 aa24.72■■□□□ 1.55
HDGFL3-203ENST00000563404 PLCH1Q4KWH8 1693 aa24.71■■□□□ 1.55
HDGFL3-203ENST00000563404 VPS72Q15906 364 aa24.7■■□□□ 1.54
HDGFL3-203ENST00000563404 TRPM3Q9HCF6 1732 aaPredicted RBP24.69■■□□□ 1.54
HDGFL3-203ENST00000563404 FAM83GA6ND36 823 aa24.68■■□□□ 1.54
HDGFL3-203ENST00000563404 CCDC125Q86Z20 511 aa24.68■■□□□ 1.54
HDGFL3-203ENST00000563404 BRWD3Q6RI45 1802 aa24.68■■□□□ 1.54
HDGFL3-203ENST00000563404 TULP4Q9NRJ4 1543 aa24.67■■□□□ 1.54
HDGFL3-203ENST00000563404 NWD2Q9ULI1 1742 aa24.67■■□□□ 1.54
HDGFL3-203ENST00000563404 WASLO00401 505 aaPredicted RBP24.66■■□□□ 1.54
HDGFL3-203ENST00000563404 SEPT12Q8IYM1 358 aa24.66■■□□□ 1.54
HDGFL3-203ENST00000563404 HRCP23327 699 aa24.65■■□□□ 1.54
HDGFL3-203ENST00000563404 ALS2Q96Q42 1657 aa24.65■■□□□ 1.54
HDGFL3-203ENST00000563404 ONECUT3O60422 494 aaPredicted RBP24.64■■□□□ 1.54
HDGFL3-203ENST00000563404 STAC3Q96MF2 364 aa24.63■■□□□ 1.53
HDGFL3-203ENST00000563404 BLMP54132 1417 aaPredicted RBP24.62■■□□□ 1.53
HDGFL3-203ENST00000563404 ZRANB1Q9UGI0 708 aa24.62■■□□□ 1.53
HDGFL3-203ENST00000563404 EIF3AQ14152 1382 aaKnown RBP24.62■■□□□ 1.53
HDGFL3-203ENST00000563404 GPRASP1Q5JY77 1395 aa24.62■■□□□ 1.53
HDGFL3-203ENST00000563404 CCDC9Q9Y3X0 531 aaKnown RBP24.61■■□□□ 1.53
HDGFL3-203ENST00000563404 NRAPQ86VF7 1730 aa24.61■■□□□ 1.53
HDGFL3-203ENST00000563404 ARHGEF28Q8N1W1 1705 aaKnown RBP24.61■■□□□ 1.53
HDGFL3-203ENST00000563404 DEFB132Q7Z7B7 95 aa24.58■■□□□ 1.53
HDGFL3-203ENST00000563404 BTG4Q9NY30 223 aa24.58■■□□□ 1.53
HDGFL3-203ENST00000563404 ATP7BP35670 1465 aa24.58■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms