RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 NISCHQ9Y2I1 1504 aa42.36■■■■■ 4.37
HDGFL3-203ENST00000563404 ABCC9O60706 1549 aa38.09■■■■□ 3.69
HDGFL3-203ENST00000563404 CCDC180Q9P1Z9 1646 aa37.98■■■■□ 3.67
HDGFL3-203ENST00000563404 RB1CC1Q8TDY2 1594 aa36.18■■■■□ 3.38
HDGFL3-203ENST00000563404 NACADO15069 1562 aa35.93■■■■□ 3.34
HDGFL3-203ENST00000563404 DNAJC5BQ9UF47 199 aa35.86■■■■□ 3.33
HDGFL3-203ENST00000563404 DCAF8L2P0C7V8 631 aa35.75■■■■□ 3.31
HDGFL3-203ENST00000563404 PABPN1Q86U42 306 aaKnown RBP eCLIP35.48■■■■□ 3.27
HDGFL3-203ENST00000563404 MYO15BQ96JP2 1530 aa35.42■■■■□ 3.26
HDGFL3-203ENST00000563404 UNC13AQ9UPW8 1703 aa35.4■■■■□ 3.26
HDGFL3-203ENST00000563404 BICRAQ9NZM4 1560 aa35.21■■■■□ 3.23
HDGFL3-203ENST00000563404 ZCCHC6Q5VYS8 1495 aaKnown RBP35.1■■■■□ 3.21
HDGFL3-203ENST00000563404 DCAF1Q9Y4B6 1507 aa34.96■■■■□ 3.19
HDGFL3-203ENST00000563404 SCRIBQ14160 1630 aa34.65■■■■□ 3.14
HDGFL3-203ENST00000563404 SHROOM4Q9ULL8 1493 aa34.63■■■■□ 3.13
HDGFL3-203ENST00000563404 CC2D2AQ9P2K1 1620 aa34.39■■■■□ 3.1
HDGFL3-203ENST00000563404 EIF4G1Q04637 1599 aaKnown RBP34.31■■■■□ 3.08
HDGFL3-203ENST00000563404 CECR2Q9BXF3 1484 aa34.3■■■■□ 3.08
HDGFL3-203ENST00000563404 NCAPD3P42695 1498 aa33.21■■■□□ 2.91
HDGFL3-203ENST00000563404 ATAD2BQ9ULI0 1458 aa33.11■■■□□ 2.89
HDGFL3-203ENST00000563404 SMARCA4P51532 1647 aa33.04■■■□□ 2.88
HDGFL3-203ENST00000563404 SMARCA2P51531 1590 aa32.96■■■□□ 2.87
HDGFL3-203ENST00000563404 HMGXB3Q12766 1538 aa32.93■■■□□ 2.86
HDGFL3-203ENST00000563404 DNAJC5Q9H3Z4 198 aa32.89■■■□□ 2.86
HDGFL3-203ENST00000563404 BAZ1AQ9NRL2 1556 aaPredicted RBP32.85■■■□□ 2.85
HDGFL3-203ENST00000563404 ERCC6Q03468 1493 aa32.84■■■□□ 2.85
HDGFL3-203ENST00000563404 CUX2O14529 1486 aa32.8■■■□□ 2.84
HDGFL3-203ENST00000563404 BAZ1BQ9UIG0 1483 aaKnown RBP32.75■■■□□ 2.83
HDGFL3-203ENST00000563404 NESP48681 1621 aa32.74■■■□□ 2.83
HDGFL3-203ENST00000563404 PEG3Q9GZU2 1588 aa32.72■■■□□ 2.83
HDGFL3-203ENST00000563404 MROH2BQ7Z745 1585 aa32.67■■■□□ 2.82
HDGFL3-203ENST00000563404 LAMC3Q9Y6N6 1575 aa32.42■■■□□ 2.78
HDGFL3-203ENST00000563404 THOC2Q8NI27 1593 aaKnown RBP32.38■■■□□ 2.77
HDGFL3-203ENST00000563404 KIF21AQ7Z4S6 1674 aa32.27■■■□□ 2.76
HDGFL3-203ENST00000563404 WIZO95785 1651 aa32.26■■■□□ 2.75
HDGFL3-203ENST00000563404 PDS5BQ9NTI5 1447 aa32.24■■■□□ 2.75
HDGFL3-203ENST00000563404 CADPSQ9ULU8 1353 aa32.19■■■□□ 2.74
HDGFL3-203ENST00000563404 MRC2Q9UBG0 1479 aa31.99■■■□□ 2.71
HDGFL3-203ENST00000563404 RSF1Q96T23 1441 aaPredicted RBP31.97■■■□□ 2.71
HDGFL3-203ENST00000563404 WDR62O43379 1518 aa31.92■■■□□ 2.7
HDGFL3-203ENST00000563404 CEP164Q9UPV0 1460 aa31.84■■■□□ 2.69
HDGFL3-203ENST00000563404 TOP2AP11388 1531 aaKnown RBP31.82■■■□□ 2.68
HDGFL3-203ENST00000563404 CFTRP13569 1480 aa31.82■■■□□ 2.68
HDGFL3-203ENST00000563404 FANCD2Q9BXW9 1451 aa31.82■■■□□ 2.68
HDGFL3-203ENST00000563404 URB2Q14146 1524 aaKnown RBP31.59■■■□□ 2.65
HDGFL3-203ENST00000563404 CCDC88BA6NC98 1476 aa31.5■■■□□ 2.63
HDGFL3-203ENST00000563404 PRDM2Q13029 1718 aa31.43■■■□□ 2.62
HDGFL3-203ENST00000563404 TRIM41Q8WV44 630 aa31.41■■■□□ 2.62
HDGFL3-203ENST00000563404 OSCARQ8IYS5 282 aa31.3■■■□□ 2.6
HDGFL3-203ENST00000563404 ZNF608Q9ULD9 1512 aaPredicted RBP31.23■■■□□ 2.59
HDGFL3-203ENST00000563404 TOPBP1Q92547 1522 aa31.22■■■□□ 2.59
HDGFL3-203ENST00000563404 IFT140Q96RY7 1462 aa31.21■■■□□ 2.59
HDGFL3-203ENST00000563404 ABCC8Q09428 1581 aa31.09■■■□□ 2.57
HDGFL3-203ENST00000563404 DNMBPQ6XZF7 1577 aa31.09■■■□□ 2.57
HDGFL3-203ENST00000563404 EIF4G3O43432 1585 aaKnown RBP31■■■□□ 2.55
HDGFL3-203ENST00000563404 TARBP1Q13395 1621 aaKnown RBP30.95■■■□□ 2.55
HDGFL3-203ENST00000563404 RIMBP3CA6NJZ7 1639 aa30.93■■■□□ 2.54
HDGFL3-203ENST00000563404 RIMBP3BA6NNM3 1639 aa30.93■■■□□ 2.54
HDGFL3-203ENST00000563404 RIMBP3Q9UFD9 1639 aa30.93■■■□□ 2.54
HDGFL3-203ENST00000563404 AQRO60306 1485 aaKnown RBP eCLIP30.92■■■□□ 2.54
HDGFL3-203ENST00000563404 POLA1P09884 1462 aaPredicted RBP30.9■■■□□ 2.54
HDGFL3-203ENST00000563404 ARHGEF11O15085 1522 aa30.83■■■□□ 2.53
HDGFL3-203ENST00000563404 RAD54L2Q9Y4B4 1467 aa30.82■■■□□ 2.53
HDGFL3-203ENST00000563404 CHD1O14646 1710 aa30.77■■■□□ 2.52
HDGFL3-203ENST00000563404 SOGA1O94964 1423 aa30.75■■■□□ 2.51
HDGFL3-203ENST00000563404 TDRD9Q8NDG6 1382 aaKnown RBP30.72■■■□□ 2.51
HDGFL3-203ENST00000563404 FGD5Q6ZNL6 1462 aa30.7■■■□□ 2.51
HDGFL3-203ENST00000563404 CUX1P39880 1505 aa30.69■■■□□ 2.5
HDGFL3-203ENST00000563404 FBLN2P98095 1184 aa30.68■■■□□ 2.5
HDGFL3-203ENST00000563404 CYB5RLQ6IPT4 315 aa30.6■■■□□ 2.49
HDGFL3-203ENST00000563404 SNAPC4Q5SXM2 1469 aa30.58■■■□□ 2.49
HDGFL3-203ENST00000563404 WDR97A6NE52 1622 aa30.57■■■□□ 2.48
HDGFL3-203ENST00000563404 ARAP1Q96P48 1450 aa30.55■■■□□ 2.48
HDGFL3-203ENST00000563404 SUPT5HO00267 1087 aaKnown RBP30.49■■■□□ 2.47
HDGFL3-203ENST00000563404 GRIN2BQ13224 1484 aa30.47■■■□□ 2.47
HDGFL3-203ENST00000563404 MAGI1Q96QZ7 1491 aaPredicted RBP30.47■■■□□ 2.47
HDGFL3-203ENST00000563404 CLASP1Q7Z460 1538 aa30.45■■■□□ 2.47
HDGFL3-203ENST00000563404 CHMP7Q8WUX9 453 aaPredicted RBP30.44■■■□□ 2.46
HDGFL3-203ENST00000563404 SYNJ2O15056 1496 aa30.38■■■□□ 2.45
HDGFL3-203ENST00000563404 GAPVD1Q14C86 1478 aa30.37■■■□□ 2.45
HDGFL3-203ENST00000563404 SYNJ1O43426 1573 aa30.37■■■□□ 2.45
HDGFL3-203ENST00000563404 PBRM1Q86U86 1689 aa30.34■■■□□ 2.45
HDGFL3-203ENST00000563404 ABCA10Q8WWZ4 1543 aa30.34■■■□□ 2.45
HDGFL3-203ENST00000563404 ABCA5Q8WWZ7 1642 aa30.3■■■□□ 2.44
HDGFL3-203ENST00000563404 TRHP20396 242 aaPredicted RBP30.24■■■□□ 2.43
HDGFL3-203ENST00000563404 WRNQ14191 1432 aaPredicted RBP eCLIP30.19■■■□□ 2.42
HDGFL3-203ENST00000563404 TOP2BQ02880 1626 aa30.14■■■□□ 2.42
HDGFL3-203ENST00000563404 BIVM-ERCC5R4GMW8 1640 aa30.14■■■□□ 2.42
HDGFL3-203ENST00000563404 GRIN2AQ12879 1464 aa30.1■■■□□ 2.41
HDGFL3-203ENST00000563404 ADAMTS12P58397 1594 aa30.07■■■□□ 2.4
HDGFL3-203ENST00000563404 NUP160Q12769 1436 aa30.02■■■□□ 2.4
HDGFL3-203ENST00000563404 CEP170Q5SW79 1584 aa30.02■■■□□ 2.4
HDGFL3-203ENST00000563404 ERCC6L2Q5T890 1561 aa30.02■■■□□ 2.4
HDGFL3-203ENST00000563404 FHAD1B1AJZ9 1412 aa29.97■■■□□ 2.39
HDGFL3-203ENST00000563404 ERICH3Q5RHP9 1530 aa29.94■■■□□ 2.38
HDGFL3-203ENST00000563404 SHROOM2Q13796 1616 aa29.88■■■□□ 2.37
HDGFL3-203ENST00000563404 PRG4Q92954 1404 aaPredicted RBP29.71■■■□□ 2.35
HDGFL3-203ENST00000563404 JPH4Q96JJ6 628 aa29.7■■■□□ 2.35
HDGFL3-203ENST00000563404 RUSC2Q8N2Y8 1516 aa29.65■■■□□ 2.34
HDGFL3-203ENST00000563404 IGF1RP08069 1367 aa29.6■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 233.7 ms