RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 TECPR2O15040 1411 aa24■■□□□ 1.43
SNX1-213ENST00000561026 WAPLQ7Z5K2 1190 aa24■■□□□ 1.43
SNX1-213ENST00000561026 SOS2Q07890 1332 aaPredicted RBP23.99■■□□□ 1.43
SNX1-213ENST00000561026 LAMC1P11047 1609 aa23.98■■□□□ 1.43
SNX1-213ENST00000561026 C14orf93Q9H972 538 aaKnown RBP23.96■■□□□ 1.43
SNX1-213ENST00000561026 CDC42BPGQ6DT37 1551 aa23.95■■□□□ 1.43
SNX1-213ENST00000561026 ESCO1Q5FWF5 840 aa23.95■■□□□ 1.42
SNX1-213ENST00000561026 AFF2P51816 1311 aa23.95■■□□□ 1.42
SNX1-213ENST00000561026 YTHDC2Q9H6S0 1430 aaKnown RBP23.94■■□□□ 1.42
SNX1-213ENST00000561026 PLEKHH1Q9ULM0 1364 aa23.93■■□□□ 1.42
SNX1-213ENST00000561026 NRXN1Q9ULB1 1477 aa23.93■■□□□ 1.42
SNX1-213ENST00000561026 RXRBP28702 533 aa23.92■■□□□ 1.42
SNX1-213ENST00000561026 SIRT1Q96EB6 747 aa23.92■■□□□ 1.42
SNX1-213ENST00000561026 C8orf37Q96NL8 207 aa23.92■■□□□ 1.42
SNX1-213ENST00000561026 CFAP70Q5T0N1 1121 aa23.91■■□□□ 1.42
SNX1-213ENST00000561026 NPHP3Q7Z494 1330 aa23.9■■□□□ 1.42
SNX1-213ENST00000561026 MYOM2P54296 1465 aa23.9■■□□□ 1.42
SNX1-213ENST00000561026 KNDC1Q76NI1 1749 aa23.89■■□□□ 1.42
SNX1-213ENST00000561026 NUTM2FA1L443 756 aa23.89■■□□□ 1.41
SNX1-213ENST00000561026 FOXO3O43524 673 aa23.89■■□□□ 1.41
SNX1-213ENST00000561026 ADAMTS2O95450 1211 aa23.89■■□□□ 1.41
SNX1-213ENST00000561026 HRCP23327 699 aa23.89■■□□□ 1.41
SNX1-213ENST00000561026 DHX57Q6P158 1386 aaKnown RBP23.88■■□□□ 1.41
SNX1-213ENST00000561026 NGLY1Q96IV0 654 aa23.86■■□□□ 1.41
SNX1-213ENST00000561026 QTRT2Q9H974 415 aaKnown RBP23.85■■□□□ 1.41
SNX1-213ENST00000561026 XPCQ01831 940 aaPredicted RBP23.84■■□□□ 1.41
SNX1-213ENST00000561026 PXDNQ92626 1479 aa23.84■■□□□ 1.41
SNX1-213ENST00000561026 CDK12Q9NYV4 1490 aaPredicted RBP23.84■■□□□ 1.41
SNX1-213ENST00000561026 RBM6P78332 1123 aaKnown RBP23.81■■□□□ 1.4
SNX1-213ENST00000561026 PRAM1Q96QH2 718 aa23.81■■□□□ 1.4
SNX1-213ENST00000561026 COL22A1Q8NFW1 1626 aaPredicted RBP23.8■■□□□ 1.4
SNX1-213ENST00000561026 DCAF11Q8TEB1 546 aa23.79■■□□□ 1.4
SNX1-213ENST00000561026 KDM2AQ9Y2K7 1162 aa23.79■■□□□ 1.4
SNX1-213ENST00000561026 FMN2Q9NZ56 1722 aa23.79■■□□□ 1.4
SNX1-213ENST00000561026 SAFB2Q14151 953 aaKnown RBP eCLIP23.78■■□□□ 1.4
SNX1-213ENST00000561026 FNBP4Q8N3X1 1017 aaPredicted RBP23.78■■□□□ 1.4
SNX1-213ENST00000561026 UPF1Q92900 1129 aaKnown RBP eCLIP23.78■■□□□ 1.4
SNX1-213ENST00000561026 STAC3Q96MF2 364 aa23.78■■□□□ 1.4
SNX1-213ENST00000561026 USP21Q9UK80 565 aa23.78■■□□□ 1.4
SNX1-213ENST00000561026 POGKQ9P215 609 aa23.77■■□□□ 1.4
SNX1-213ENST00000561026 DLC1Q96QB1 1528 aa23.75■■□□□ 1.39
SNX1-213ENST00000561026 ADGRB1O14514 1584 aa23.75■■□□□ 1.39
SNX1-213ENST00000561026 KRT28Q7Z3Y7 464 aa23.75■■□□□ 1.39
SNX1-213ENST00000561026 PHF8Q9UPP1 1060 aa23.75■■□□□ 1.39
SNX1-213ENST00000561026 SPATA31A3Q5VYP0 1347 aa23.74■■□□□ 1.39
SNX1-213ENST00000561026 TRPC5Q9UL62 973 aaPredicted RBP23.74■■□□□ 1.39
SNX1-213ENST00000561026 KIF1AQ12756 1690 aa23.73■■□□□ 1.39
SNX1-213ENST00000561026 TRAK1Q9UPV9 953 aa23.73■■□□□ 1.39
SNX1-213ENST00000561026 RGS12O14924 1447 aa23.73■■□□□ 1.39
SNX1-213ENST00000561026 PSME1Q06323 249 aa23.7■■□□□ 1.38
SNX1-213ENST00000561026 RGPD8O14715 1765 aaPredicted RBP23.68■■□□□ 1.38
SNX1-213ENST00000561026 ATRNO75882 1429 aa23.68■■□□□ 1.38
SNX1-213ENST00000561026 HIRIP3Q9BW71 556 aaPredicted RBP23.67■■□□□ 1.38
SNX1-213ENST00000561026 ANKARQ7Z5J8 1434 aa23.67■■□□□ 1.38
SNX1-213ENST00000561026 BCL9LQ86UU0 1499 aa23.67■■□□□ 1.38
SNX1-213ENST00000561026 MINK1Q8N4C8 1332 aaPredicted RBP23.65■■□□□ 1.38
SNX1-213ENST00000561026 ADGRB2O60241 1585 aa23.65■■□□□ 1.38
SNX1-213ENST00000561026 SBNO1A3KN83 1393 aa23.65■■□□□ 1.38
SNX1-213ENST00000561026 PMFBP1Q8TBY8 1022 aa23.65■■□□□ 1.38
SNX1-213ENST00000561026 TNS3Q68CZ2 1445 aa23.64■■□□□ 1.37
SNX1-213ENST00000561026 MARF1Q9Y4F3 1742 aaKnown RBP23.63■■□□□ 1.37
SNX1-213ENST00000561026 WASLO00401 505 aaPredicted RBP23.62■■□□□ 1.37
SNX1-213ENST00000561026 USP32Q8NFA0 1604 aa23.62■■□□□ 1.37
SNX1-213ENST00000561026 EIF3AQ14152 1382 aaKnown RBP23.61■■□□□ 1.37
SNX1-213ENST00000561026 CABLES1Q8TDN4 633 aa23.61■■□□□ 1.37
SNX1-213ENST00000561026 PRR36Q9H6K5 1346 aa23.6■■□□□ 1.37
SNX1-213ENST00000561026 LMOD2Q6P5Q4 547 aa23.6■■□□□ 1.37
SNX1-213ENST00000561026 UNC5CLQ8IV45 518 aa23.6■■□□□ 1.37
SNX1-213ENST00000561026 GJD4Q96KN9 370 aaPredicted RBP23.6■■□□□ 1.37
SNX1-213ENST00000561026 ARHGEF10O15013 1369 aa23.59■■□□□ 1.37
SNX1-213ENST00000561026 HAP1P54257 671 aaPredicted RBP23.59■■□□□ 1.37
SNX1-213ENST00000561026 SLIT2O94813 1529 aa23.58■■□□□ 1.37
SNX1-213ENST00000561026 ATAD2Q6PL18 1390 aa23.57■■□□□ 1.36
SNX1-213ENST00000561026 TULP4Q9NRJ4 1543 aa23.57■■□□□ 1.36
SNX1-213ENST00000561026 PLEKHG5O94827 1062 aa23.56■■□□□ 1.36
SNX1-213ENST00000561026 GPRASP1Q5JY77 1395 aa23.55■■□□□ 1.36
SNX1-213ENST00000561026 NGDNQ8NEJ9 315 aaKnown RBP23.52■■□□□ 1.36
SNX1-213ENST00000561026 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.52■■□□□ 1.36
SNX1-213ENST00000561026 ARHGEF28Q8N1W1 1705 aaKnown RBP23.52■■□□□ 1.35
SNX1-213ENST00000561026 EP400Q96L91 3159 aa23.51■■□□□ 1.35
SNX1-213ENST00000561026 NUDT16Q96DE0 195 aaKnown RBP23.51■■□□□ 1.35
SNX1-213ENST00000561026 RALGAPBQ86X10 1494 aa23.5■■□□□ 1.35
SNX1-213ENST00000561026 FAM83GA6ND36 823 aa23.5■■□□□ 1.35
SNX1-213ENST00000561026 NBPF1Q3BBV0 1214 aa23.5■■□□□ 1.35
SNX1-213ENST00000561026 TRPM3Q9HCF6 1732 aaPredicted RBP23.49■■□□□ 1.35
SNX1-213ENST00000561026 VPS72Q15906 364 aa23.49■■□□□ 1.35
SNX1-213ENST00000561026 CDK19Q9BWU1 502 aa23.49■■□□□ 1.35
SNX1-213ENST00000561026 KIAA1210Q9ULL0 1709 aa23.48■■□□□ 1.35
SNX1-213ENST00000561026 GLI3P10071 1580 aa23.47■■□□□ 1.35
SNX1-213ENST00000561026 ATP7BP35670 1465 aa23.47■■□□□ 1.35
SNX1-213ENST00000561026 ABCA3Q99758 1704 aa23.47■■□□□ 1.35
SNX1-213ENST00000561026 PAK3O75914 559 aaPredicted RBP23.46■■□□□ 1.35
SNX1-213ENST00000561026 ALS2Q96Q42 1657 aa23.45■■□□□ 1.34
SNX1-213ENST00000561026 NWD2Q9ULI1 1742 aa23.43■■□□□ 1.34
SNX1-213ENST00000561026 ONECUT3O60422 494 aaPredicted RBP23.43■■□□□ 1.34
SNX1-213ENST00000561026 CCDC125Q86Z20 511 aa23.43■■□□□ 1.34
SNX1-213ENST00000561026 CCDC9Q9Y3X0 531 aaKnown RBP23.43■■□□□ 1.34
SNX1-213ENST00000561026 CCDC61Q9Y6R9 512 aa23.43■■□□□ 1.34
SNX1-213ENST00000561026 L3MBTL2Q969R5 705 aa23.42■■□□□ 1.34
SNX1-213ENST00000561026 PLCH1Q4KWH8 1693 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms