RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 TECPR2O15040 1411 aa20.86■□□□□ 0.93
LDLR-213ENST00000560502 ADGRF5Q8IZF2 1346 aa20.83■□□□□ 0.93
LDLR-213ENST00000560502 PXDNQ92626 1479 aa20.83■□□□□ 0.93
LDLR-213ENST00000560502 RBM6P78332 1123 aaKnown RBP20.83■□□□□ 0.93
LDLR-213ENST00000560502 FOXD1Q16676 465 aa20.83■□□□□ 0.93
LDLR-213ENST00000560502 CCDC144AA2RUR9 1427 aa20.83■□□□□ 0.93
LDLR-213ENST00000560502 QTRT2Q9H974 415 aaKnown RBP20.82■□□□□ 0.92
LDLR-213ENST00000560502 MYOM2P54296 1465 aa20.81■□□□□ 0.92
LDLR-213ENST00000560502 MARF1Q9Y4F3 1742 aaKnown RBP20.81■□□□□ 0.92
LDLR-213ENST00000560502 ADAMTS2O95450 1211 aa20.8■□□□□ 0.92
LDLR-213ENST00000560502 LRPPRCP42704 1394 aaKnown RBP20.8■□□□□ 0.92
LDLR-213ENST00000560502 ANKRD30BQ9BXX2 1392 aa20.8■□□□□ 0.92
LDLR-213ENST00000560502 PIK3C2GO75747 1445 aa20.79■□□□□ 0.92
LDLR-213ENST00000560502 NGLY1Q96IV0 654 aa20.79■□□□□ 0.92
LDLR-213ENST00000560502 FMN2Q9NZ56 1722 aa20.78■□□□□ 0.92
LDLR-213ENST00000560502 NPHP3Q7Z494 1330 aa20.78■□□□□ 0.92
LDLR-213ENST00000560502 ABCC11Q96J66 1382 aa20.77■□□□□ 0.92
LDLR-213ENST00000560502 FNBP4Q8N3X1 1017 aaPredicted RBP20.76■□□□□ 0.91
LDLR-213ENST00000560502 MPHOSPH9Q99550 1183 aa20.76■□□□□ 0.91
LDLR-213ENST00000560502 ATRNO75882 1429 aa20.76■□□□□ 0.91
LDLR-213ENST00000560502 KIF1AQ12756 1690 aa20.75■□□□□ 0.91
LDLR-213ENST00000560502 PLEKHH1Q9ULM0 1364 aa20.74■□□□□ 0.91
LDLR-213ENST00000560502 ESCO1Q5FWF5 840 aa20.74■□□□□ 0.91
LDLR-213ENST00000560502 USP21Q9UK80 565 aa20.74■□□□□ 0.91
LDLR-213ENST00000560502 RGL3Q3MIN7 710 aa20.73■□□□□ 0.91
LDLR-213ENST00000560502 WAPLQ7Z5K2 1190 aa20.73■□□□□ 0.91
LDLR-213ENST00000560502 YTHDC2Q9H6S0 1430 aaKnown RBP20.72■□□□□ 0.91
LDLR-213ENST00000560502 STK26Q9P289 416 aa20.72■□□□□ 0.91
LDLR-213ENST00000560502 TRPC5Q9UL62 973 aaPredicted RBP20.72■□□□□ 0.91
LDLR-213ENST00000560502 NRXN1Q9ULB1 1477 aa20.72■□□□□ 0.91
LDLR-213ENST00000560502 TNKS1BP1Q9C0C2 1729 aaKnown RBP20.72■□□□□ 0.91
LDLR-213ENST00000560502 BCL9LQ86UU0 1499 aa20.71■□□□□ 0.91
LDLR-213ENST00000560502 FOXO3O43524 673 aa20.7■□□□□ 0.9
LDLR-213ENST00000560502 TMEM132EQ6IEE7 984 aa20.7■□□□□ 0.9
LDLR-213ENST00000560502 ATAD2Q6PL18 1390 aa20.7■□□□□ 0.9
LDLR-213ENST00000560502 RGPD8O14715 1765 aaPredicted RBP20.69■□□□□ 0.9
LDLR-213ENST00000560502 XPCQ01831 940 aaPredicted RBP20.68■□□□□ 0.9
LDLR-213ENST00000560502 NUTM2FA1L443 756 aa20.66■□□□□ 0.9
LDLR-213ENST00000560502 SIRT1Q96EB6 747 aa20.66■□□□□ 0.9
LDLR-213ENST00000560502 USP32Q8NFA0 1604 aa20.65■□□□□ 0.9
LDLR-213ENST00000560502 C14orf93Q9H972 538 aaKnown RBP20.65■□□□□ 0.9
LDLR-213ENST00000560502 SPATA31A3Q5VYP0 1347 aa20.64■□□□□ 0.89
LDLR-213ENST00000560502 ACIN1Q9UKV3 1341 aaKnown RBP20.64■□□□□ 0.89
LDLR-213ENST00000560502 SLIT2O94813 1529 aa20.63■□□□□ 0.89
LDLR-213ENST00000560502 ABCA3Q99758 1704 aa20.63■□□□□ 0.89
LDLR-213ENST00000560502 GLI3P10071 1580 aa20.63■□□□□ 0.89
LDLR-213ENST00000560502 DLC1Q96QB1 1528 aa20.62■□□□□ 0.89
LDLR-213ENST00000560502 ADGRB2O60241 1585 aa20.6■□□□□ 0.89
LDLR-213ENST00000560502 TNS3Q68CZ2 1445 aa20.6■□□□□ 0.89
LDLR-213ENST00000560502 DHX57Q6P158 1386 aaKnown RBP20.59■□□□□ 0.89
LDLR-213ENST00000560502 CFAP70Q5T0N1 1121 aa20.59■□□□□ 0.89
LDLR-213ENST00000560502 GJD4Q96KN9 370 aaPredicted RBP20.59■□□□□ 0.89
LDLR-213ENST00000560502 ADGRB1O14514 1584 aa20.59■□□□□ 0.89
LDLR-213ENST00000560502 PLCH1Q4KWH8 1693 aa20.58■□□□□ 0.89
LDLR-213ENST00000560502 RALGAPBQ86X10 1494 aa20.58■□□□□ 0.89
LDLR-213ENST00000560502 NWD2Q9ULI1 1742 aa20.58■□□□□ 0.88
LDLR-213ENST00000560502 EP400Q96L91 3159 aa20.57■□□□□ 0.88
LDLR-213ENST00000560502 KRT28Q7Z3Y7 464 aa20.57■□□□□ 0.88
LDLR-213ENST00000560502 PHF8Q9UPP1 1060 aa20.57■□□□□ 0.88
LDLR-213ENST00000560502 BRWD3Q6RI45 1802 aa20.57■□□□□ 0.88
LDLR-213ENST00000560502 UNC5CLQ8IV45 518 aa20.56■□□□□ 0.88
LDLR-213ENST00000560502 SBNO1A3KN83 1393 aa20.56■□□□□ 0.88
LDLR-213ENST00000560502 ANKARQ7Z5J8 1434 aa20.55■□□□□ 0.88
LDLR-213ENST00000560502 TRPM3Q9HCF6 1732 aaPredicted RBP20.54■□□□□ 0.88
LDLR-213ENST00000560502 PRAM1Q96QH2 718 aa20.54■□□□□ 0.88
LDLR-213ENST00000560502 RAB3GAP2Q9H2M9 1393 aa20.54■□□□□ 0.88
LDLR-213ENST00000560502 PSME1Q06323 249 aa20.51■□□□□ 0.87
LDLR-213ENST00000560502 CCDC125Q86Z20 511 aa20.51■□□□□ 0.87
LDLR-213ENST00000560502 ALS2Q96Q42 1657 aa20.51■□□□□ 0.87
LDLR-213ENST00000560502 ARHGEF10O15013 1369 aa20.5■□□□□ 0.87
LDLR-213ENST00000560502 SAFB2Q14151 953 aaKnown RBP eCLIP20.5■□□□□ 0.87
LDLR-213ENST00000560502 NRAPQ86VF7 1730 aa20.5■□□□□ 0.87
LDLR-213ENST00000560502 CABLES1Q8TDN4 633 aa20.49■□□□□ 0.87
LDLR-213ENST00000560502 TULP4Q9NRJ4 1543 aa20.48■□□□□ 0.87
LDLR-213ENST00000560502 CRYBG1Q9Y4K1 1723 aa20.47■□□□□ 0.87
LDLR-213ENST00000560502 VPS72Q15906 364 aa20.47■□□□□ 0.87
LDLR-213ENST00000560502 BLMP54132 1417 aaPredicted RBP20.46■□□□□ 0.87
LDLR-213ENST00000560502 POGKQ9P215 609 aa20.46■□□□□ 0.87
LDLR-213ENST00000560502 ARHGEF28Q8N1W1 1705 aaKnown RBP20.45■□□□□ 0.86
LDLR-213ENST00000560502 HAP1P54257 671 aaPredicted RBP20.44■□□□□ 0.86
LDLR-213ENST00000560502 PMFBP1Q8TBY8 1022 aa20.44■□□□□ 0.86
LDLR-213ENST00000560502 ZRANB1Q9UGI0 708 aa20.44■□□□□ 0.86
LDLR-213ENST00000560502 PRR36Q9H6K5 1346 aa20.44■□□□□ 0.86
LDLR-213ENST00000560502 EIF3AQ14152 1382 aaKnown RBP20.44■□□□□ 0.86
LDLR-213ENST00000560502 COL14A1Q05707 1796 aaKnown RBP20.44■□□□□ 0.86
LDLR-213ENST00000560502 ONECUT3O60422 494 aaPredicted RBP20.43■□□□□ 0.86
LDLR-213ENST00000560502 SEPT12Q8IYM1 358 aa20.42■□□□□ 0.86
LDLR-213ENST00000560502 TRAK1Q9UPV9 953 aa20.42■□□□□ 0.86
LDLR-213ENST00000560502 ITSN1Q15811 1721 aa20.41■□□□□ 0.86
LDLR-213ENST00000560502 SRCAPQ6ZRS2 3230 aa20.41■□□□□ 0.86
LDLR-213ENST00000560502 LMOD2Q6P5Q4 547 aa20.41■□□□□ 0.86
LDLR-213ENST00000560502 FAM83GA6ND36 823 aa20.4■□□□□ 0.86
LDLR-213ENST00000560502 HRCP23327 699 aa20.4■□□□□ 0.86
LDLR-213ENST00000560502 MINK1Q8N4C8 1332 aaPredicted RBP20.4■□□□□ 0.86
LDLR-213ENST00000560502 HIRIP3Q9BW71 556 aaPredicted RBP20.4■□□□□ 0.86
LDLR-213ENST00000560502 GPRASP1Q5JY77 1395 aa20.39■□□□□ 0.85
LDLR-213ENST00000560502 PLEKHG5O94827 1062 aa20.39■□□□□ 0.85
LDLR-213ENST00000560502 STAC3Q96MF2 364 aa20.39■□□□□ 0.85
LDLR-213ENST00000560502 WASLO00401 505 aaPredicted RBP20.38■□□□□ 0.85
LDLR-213ENST00000560502 ZEB1P37275 1124 aaPredicted RBP20.38■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms