RNA–Protein interactions for RNA: ENST00000559996.1

HERC1-206, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 2

Gene HERC1, Length 443 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-206ENST00000559996 ST20-MTHFSA0A0A6YYL1 179 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 EIF4G2P78344 907 aaKnown RBP eCLIP13.28□□□□□ -0.28
HERC1-206ENST00000559996 SIRT1Q96EB6 747 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 TESK2Q96S53 571 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 STK26Q9P289 416 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 AMOTL2Q9Y2J4 779 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 USP47Q96K76 1375 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 PIK3R4Q99570 1358 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 TECPR2O15040 1411 aa13.28□□□□□ -0.28
HERC1-206ENST00000559996 CHD2O14647 1828 aaKnown RBP13.27□□□□□ -0.28
HERC1-206ENST00000559996 C11orf95C9JLR9 678 aaPredicted RBP13.27□□□□□ -0.29
HERC1-206ENST00000559996 KCNA6P17658 529 aa13.26□□□□□ -0.29
HERC1-206ENST00000559996 ROBO2Q9HCK4 1378 aa13.26□□□□□ -0.29
HERC1-206ENST00000559996 DLC1Q96QB1 1528 aa13.25□□□□□ -0.29
HERC1-206ENST00000559996 PLEKHH1Q9ULM0 1364 aa13.25□□□□□ -0.29
HERC1-206ENST00000559996 WAPLQ7Z5K2 1190 aa13.25□□□□□ -0.29
HERC1-206ENST00000559996 STRCP1A6NGW2 1772 aa13.25□□□□□ -0.29
HERC1-206ENST00000559996 XRN1Q8IZH2 1706 aaKnown RBP13.25□□□□□ -0.29
HERC1-206ENST00000559996 ARHGEF28Q8N1W1 1705 aaKnown RBP13.25□□□□□ -0.29
HERC1-206ENST00000559996 KNDC1Q76NI1 1749 aa13.23□□□□□ -0.29
HERC1-206ENST00000559996 PRAM1Q96QH2 718 aa13.23□□□□□ -0.29
HERC1-206ENST00000559996 CPS1P31327 1500 aa13.23□□□□□ -0.29
HERC1-206ENST00000559996 FAM135BQ49AJ0 1406 aa13.22□□□□□ -0.29
HERC1-206ENST00000559996 NWD1Q149M9 1564 aa13.22□□□□□ -0.29
HERC1-206ENST00000559996 CENPJQ9HC77 1338 aaPredicted RBP13.21□□□□□ -0.29
HERC1-206ENST00000559996 PTCH1Q13635 1447 aa13.21□□□□□ -0.3
HERC1-206ENST00000559996 ZNF316A6NFI3 1004 aaPredicted RBP13.2□□□□□ -0.3
HERC1-206ENST00000559996 SBNO2Q9Y2G9 1366 aa13.2□□□□□ -0.3
HERC1-206ENST00000559996 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.19□□□□□ -0.3
HERC1-206ENST00000559996 ZNF335Q9H4Z2 1342 aaPredicted RBP13.19□□□□□ -0.3
HERC1-206ENST00000559996 AKT1S1Q96B36 256 aa13.19□□□□□ -0.3
HERC1-206ENST00000559996 SAFB2Q14151 953 aaKnown RBP eCLIP13.18□□□□□ -0.3
HERC1-206ENST00000559996 RBM33Q96EV2 1170 aaKnown RBP13.18□□□□□ -0.3
HERC1-206ENST00000559996 EIF3AQ14152 1382 aaKnown RBP13.18□□□□□ -0.3
HERC1-206ENST00000559996 DISP3Q9P2K9 1392 aa13.18□□□□□ -0.3
HERC1-206ENST00000559996 POGKQ9P215 609 aa13.17□□□□□ -0.3
HERC1-206ENST00000559996 WASHC2AQ641Q2 1341 aa13.16□□□□□ -0.3
HERC1-206ENST00000559996 QRICH2Q9H0J4 1663 aa13.16□□□□□ -0.3
HERC1-206ENST00000559996 MINK1Q8N4C8 1332 aaPredicted RBP13.15□□□□□ -0.3
HERC1-206ENST00000559996 TULP4Q9NRJ4 1543 aa13.15□□□□□ -0.3
HERC1-206ENST00000559996 KIF7Q2M1P5 1343 aa13.14□□□□□ -0.31
HERC1-206ENST00000559996 LTBP4Q8N2S1 1624 aa13.14□□□□□ -0.31
HERC1-206ENST00000559996 PROSER2Q86WR7 435 aaPredicted RBP13.14□□□□□ -0.31
HERC1-206ENST00000559996 NKTRP30414 1462 aaKnown RBP13.14□□□□□ -0.31
HERC1-206ENST00000559996 LRRC7Q96NW7 1537 aa13.13□□□□□ -0.31
HERC1-206ENST00000559996 XIRP1Q702N8 1843 aaKnown RBP13.13□□□□□ -0.31
HERC1-206ENST00000559996 CCDC7Q96M83 1385 aa13.13□□□□□ -0.31
HERC1-206ENST00000559996 PUS7Q96PZ0 661 aaKnown RBP13.13□□□□□ -0.31
HERC1-206ENST00000559996 CDK19Q9BWU1 502 aa13.13□□□□□ -0.31
HERC1-206ENST00000559996 NCOA3Q9Y6Q9 1424 aa13.13□□□□□ -0.31
HERC1-206ENST00000559996 TMEM94Q12767 1356 aa13.12□□□□□ -0.31
HERC1-206ENST00000559996 WASLO00401 505 aaPredicted RBP13.12□□□□□ -0.31
HERC1-206ENST00000559996 TMF1P82094 1093 aa13.12□□□□□ -0.31
HERC1-206ENST00000559996 ADGRB2O60241 1585 aa13.11□□□□□ -0.31
HERC1-206ENST00000559996 SLC24A1O60721 1099 aa13.11□□□□□ -0.31
HERC1-206ENST00000559996 ATXN8OSP0DMR3 200 aa13.1□□□□□ -0.31
HERC1-206ENST00000559996 CABP2Q9NPB3 220 aa13.1□□□□□ -0.31
HERC1-206ENST00000559996 NALCNQ8IZF0 1738 aa13.1□□□□□ -0.31
HERC1-206ENST00000559996 EVC2Q86UK5 1308 aa13.1□□□□□ -0.31
HERC1-206ENST00000559996 PRR36Q9H6K5 1346 aa13.1□□□□□ -0.31
HERC1-206ENST00000559996 ADGRL3Q9HAR2 1447 aa13.09□□□□□ -0.31
HERC1-206ENST00000559996 REM2Q8IYK8 340 aaPredicted RBP13.08□□□□□ -0.32
HERC1-206ENST00000559996 C19orf44Q9H6X5 657 aa13.08□□□□□ -0.32
HERC1-206ENST00000559996 USP32Q8NFA0 1604 aa13.06□□□□□ -0.32
HERC1-206ENST00000559996 NUDT16Q96DE0 195 aaKnown RBP13.06□□□□□ -0.32
HERC1-206ENST00000559996 SLC12A5Q9H2X9 1139 aa13.06□□□□□ -0.32
HERC1-206ENST00000559996 DDX10Q13206 875 aaKnown RBP13.05□□□□□ -0.32
HERC1-206ENST00000559996 CDCA8Q53HL2 280 aa13.05□□□□□ -0.32
HERC1-206ENST00000559996 ATP7BP35670 1465 aa13.04□□□□□ -0.32
HERC1-206ENST00000559996 CDC42BPGQ6DT37 1551 aa13.04□□□□□ -0.32
HERC1-206ENST00000559996 PER1O15534 1290 aaPredicted RBP13.04□□□□□ -0.32
HERC1-206ENST00000559996 SRPK2P78362 688 aaKnown RBP13.04□□□□□ -0.32
HERC1-206ENST00000559996 MYOM1P52179 1685 aa13.04□□□□□ -0.32
HERC1-206ENST00000559996 FMN2Q9NZ56 1722 aa13.04□□□□□ -0.32
HERC1-206ENST00000559996 CD163L1Q9NR16 1453 aa13.04□□□□□ -0.32
HERC1-206ENST00000559996 RGPD8O14715 1765 aaPredicted RBP13.03□□□□□ -0.32
HERC1-206ENST00000559996 PLEKHG3A1L390 1219 aa13.03□□□□□ -0.32
HERC1-206ENST00000559996 NUTM2FA1L443 756 aa13.03□□□□□ -0.32
HERC1-206ENST00000559996 CABP1Q9NZU7 370 aa13.03□□□□□ -0.32
HERC1-206ENST00000559996 CCDC61Q9Y6R9 512 aa13.03□□□□□ -0.32
HERC1-206ENST00000559996 DCCP43146 1447 aa13.03□□□□□ -0.32
HERC1-206ENST00000559996 CARD14Q9BXL6 1004 aa13.02□□□□□ -0.33
HERC1-206ENST00000559996 ATAD2Q6PL18 1390 aa13.02□□□□□ -0.33
HERC1-206ENST00000559996 MST1RQ04912 1400 aa13.02□□□□□ -0.33
HERC1-206ENST00000559996 POLR3GLQ9BT43 218 aa13.01□□□□□ -0.33
HERC1-206ENST00000559996 PANK3Q9H999 370 aa13.01□□□□□ -0.33
HERC1-206ENST00000559996 ANKARQ7Z5J8 1434 aa13.01□□□□□ -0.33
HERC1-206ENST00000559996 TOPAZ1Q8N9V7 1692 aa13□□□□□ -0.33
HERC1-206ENST00000559996 C1orf167Q5SNV9 1468 aa13□□□□□ -0.33
HERC1-206ENST00000559996 C14orf37Q86TY3 774 aa13□□□□□ -0.33
HERC1-206ENST00000559996 ORAI2Q96SN7 254 aa13□□□□□ -0.33
HERC1-206ENST00000559996 CPSF1Q10570 1443 aaKnown RBP12.99□□□□□ -0.33
HERC1-206ENST00000559996 MSH6P52701 1360 aa12.99□□□□□ -0.33
HERC1-206ENST00000559996 CADPS2Q86UW7 1296 aa12.99□□□□□ -0.33
HERC1-206ENST00000559996 PPIP5K1Q6PFW1 1433 aa12.98□□□□□ -0.33
HERC1-206ENST00000559996 ATF3P18847 181 aa12.98□□□□□ -0.33
HERC1-206ENST00000559996 TMC1Q8TDI8 760 aa12.98□□□□□ -0.33
HERC1-206ENST00000559996 SLAIN2Q9P270 581 aa12.98□□□□□ -0.33
HERC1-206ENST00000559996 POLR3AO14802 1390 aaPredicted RBP12.97□□□□□ -0.33
HERC1-206ENST00000559996 NINLQ9Y2I6 1382 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms