RNA–Protein interactions for RNA: ENST00000556433.5

ACTN1-220, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 1,259 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-220ENST00000556433 IFT172Q9UG01 1749 aa33.37■■■□□ 2.93
ACTN1-220ENST00000556433 SOS2Q07890 1332 aaPredicted RBP33.36■■■□□ 2.93
ACTN1-220ENST00000556433 ESCO1Q5FWF5 840 aa33.36■■■□□ 2.93
ACTN1-220ENST00000556433 TECPR2O15040 1411 aa33.36■■■□□ 2.93
ACTN1-220ENST00000556433 AFF2P51816 1311 aa33.34■■■□□ 2.93
ACTN1-220ENST00000556433 C14orf93Q9H972 538 aaKnown RBP33.34■■■□□ 2.93
ACTN1-220ENST00000556433 RXRBP28702 533 aa33.32■■■□□ 2.92
ACTN1-220ENST00000556433 C8orf37Q96NL8 207 aa33.32■■■□□ 2.92
ACTN1-220ENST00000556433 PLEKHH1Q9ULM0 1364 aa33.31■■■□□ 2.92
ACTN1-220ENST00000556433 YTHDC2Q9H6S0 1430 aaKnown RBP33.3■■■□□ 2.92
ACTN1-220ENST00000556433 NUTM2FA1L443 756 aa33.3■■■□□ 2.92
ACTN1-220ENST00000556433 CFAP70Q5T0N1 1121 aa33.3■■■□□ 2.92
ACTN1-220ENST00000556433 CDC42BPGQ6DT37 1551 aa33.29■■■□□ 2.92
ACTN1-220ENST00000556433 LAMC1P11047 1609 aa33.28■■■□□ 2.92
ACTN1-220ENST00000556433 ADAMTS2O95450 1211 aa33.28■■■□□ 2.92
ACTN1-220ENST00000556433 SIRT1Q96EB6 747 aa33.28■■■□□ 2.92
ACTN1-220ENST00000556433 NPHP3Q7Z494 1330 aa33.27■■■□□ 2.92
ACTN1-220ENST00000556433 FOXO3O43524 673 aa33.26■■■□□ 2.91
ACTN1-220ENST00000556433 DHX57Q6P158 1386 aaKnown RBP33.25■■■□□ 2.91
ACTN1-220ENST00000556433 NGLY1Q96IV0 654 aa33.25■■■□□ 2.91
ACTN1-220ENST00000556433 NRXN1Q9ULB1 1477 aa33.24■■■□□ 2.91
ACTN1-220ENST00000556433 MYOM2P54296 1465 aa33.23■■■□□ 2.91
ACTN1-220ENST00000556433 HRCP23327 699 aa33.22■■■□□ 2.91
ACTN1-220ENST00000556433 XPCQ01831 940 aaPredicted RBP33.22■■■□□ 2.91
ACTN1-220ENST00000556433 QTRT2Q9H974 415 aaKnown RBP33.22■■■□□ 2.91
ACTN1-220ENST00000556433 KNDC1Q76NI1 1749 aa33.21■■■□□ 2.91
ACTN1-220ENST00000556433 KDM2AQ9Y2K7 1162 aa33.17■■■□□ 2.9
ACTN1-220ENST00000556433 RBM6P78332 1123 aaKnown RBP33.15■■■□□ 2.9
ACTN1-220ENST00000556433 SAFB2Q14151 953 aaKnown RBP eCLIP33.15■■■□□ 2.9
ACTN1-220ENST00000556433 PRAM1Q96QH2 718 aa33.15■■■□□ 2.9
ACTN1-220ENST00000556433 PXDNQ92626 1479 aa33.14■■■□□ 2.9
ACTN1-220ENST00000556433 DCAF11Q8TEB1 546 aa33.14■■■□□ 2.9
ACTN1-220ENST00000556433 POGKQ9P215 609 aa33.12■■■□□ 2.89
ACTN1-220ENST00000556433 CDK12Q9NYV4 1490 aaPredicted RBP33.12■■■□□ 2.89
ACTN1-220ENST00000556433 UPF1Q92900 1129 aaKnown RBP eCLIP33.11■■■□□ 2.89
ACTN1-220ENST00000556433 USP21Q9UK80 565 aa33.11■■■□□ 2.89
ACTN1-220ENST00000556433 FMN2Q9NZ56 1722 aa33.08■■■□□ 2.89
ACTN1-220ENST00000556433 KRT28Q7Z3Y7 464 aa33.08■■■□□ 2.89
ACTN1-220ENST00000556433 FNBP4Q8N3X1 1017 aaPredicted RBP33.08■■■□□ 2.89
ACTN1-220ENST00000556433 PHF8Q9UPP1 1060 aa33.07■■■□□ 2.88
ACTN1-220ENST00000556433 TRAK1Q9UPV9 953 aa33.07■■■□□ 2.88
ACTN1-220ENST00000556433 COL22A1Q8NFW1 1626 aaPredicted RBP33.06■■■□□ 2.88
ACTN1-220ENST00000556433 STAC3Q96MF2 364 aa33.06■■■□□ 2.88
ACTN1-220ENST00000556433 TRPC5Q9UL62 973 aaPredicted RBP33.05■■■□□ 2.88
ACTN1-220ENST00000556433 SPATA31A3Q5VYP0 1347 aa33.03■■■□□ 2.88
ACTN1-220ENST00000556433 DLC1Q96QB1 1528 aa33.02■■■□□ 2.88
ACTN1-220ENST00000556433 RGS12O14924 1447 aa33.01■■■□□ 2.87
ACTN1-220ENST00000556433 PSME1Q06323 249 aa33■■■□□ 2.87
ACTN1-220ENST00000556433 ADGRB1O14514 1584 aa33■■■□□ 2.87
ACTN1-220ENST00000556433 KIF1AQ12756 1690 aa32.99■■■□□ 2.87
ACTN1-220ENST00000556433 HIRIP3Q9BW71 556 aaPredicted RBP32.97■■■□□ 2.87
ACTN1-220ENST00000556433 MINK1Q8N4C8 1332 aaPredicted RBP32.96■■■□□ 2.87
ACTN1-220ENST00000556433 PMFBP1Q8TBY8 1022 aa32.95■■■□□ 2.87
ACTN1-220ENST00000556433 RGPD8O14715 1765 aaPredicted RBP32.94■■■□□ 2.86
ACTN1-220ENST00000556433 ATRNO75882 1429 aa32.93■■■□□ 2.86
ACTN1-220ENST00000556433 ANKARQ7Z5J8 1434 aa32.92■■■□□ 2.86
ACTN1-220ENST00000556433 BCL9LQ86UU0 1499 aa32.92■■■□□ 2.86
ACTN1-220ENST00000556433 LMOD2Q6P5Q4 547 aa32.91■■■□□ 2.86
ACTN1-220ENST00000556433 PLEKHG5O94827 1062 aa32.9■■■□□ 2.86
ACTN1-220ENST00000556433 HAP1P54257 671 aaPredicted RBP32.9■■■□□ 2.86
ACTN1-220ENST00000556433 TNS3Q68CZ2 1445 aa32.89■■■□□ 2.86
ACTN1-220ENST00000556433 SBNO1A3KN83 1393 aa32.89■■■□□ 2.86
ACTN1-220ENST00000556433 WASLO00401 505 aaPredicted RBP32.88■■■□□ 2.85
ACTN1-220ENST00000556433 CABLES1Q8TDN4 633 aa32.88■■■□□ 2.85
ACTN1-220ENST00000556433 ADGRB2O60241 1585 aa32.86■■■□□ 2.85
ACTN1-220ENST00000556433 UNC5CLQ8IV45 518 aa32.85■■■□□ 2.85
ACTN1-220ENST00000556433 GJD4Q96KN9 370 aaPredicted RBP32.85■■■□□ 2.85
ACTN1-220ENST00000556433 EIF3AQ14152 1382 aaKnown RBP32.84■■■□□ 2.85
ACTN1-220ENST00000556433 PRR36Q9H6K5 1346 aa32.84■■■□□ 2.85
ACTN1-220ENST00000556433 MARF1Q9Y4F3 1742 aaKnown RBP32.84■■■□□ 2.85
ACTN1-220ENST00000556433 USP32Q8NFA0 1604 aa32.83■■■□□ 2.85
ACTN1-220ENST00000556433 ARHGEF10O15013 1369 aa32.83■■■□□ 2.85
ACTN1-220ENST00000556433 GPRASP1Q5JY77 1395 aa32.8■■■□□ 2.84
ACTN1-220ENST00000556433 ATAD2Q6PL18 1390 aa32.8■■■□□ 2.84
ACTN1-220ENST00000556433 SLIT2O94813 1529 aa32.79■■■□□ 2.84
ACTN1-220ENST00000556433 TULP4Q9NRJ4 1543 aa32.77■■■□□ 2.84
ACTN1-220ENST00000556433 NGDNQ8NEJ9 315 aaKnown RBP32.77■■■□□ 2.84
ACTN1-220ENST00000556433 NUDT16Q96DE0 195 aaKnown RBP32.74■■■□□ 2.83
ACTN1-220ENST00000556433 NBPF1Q3BBV0 1214 aa32.72■■■□□ 2.83
ACTN1-220ENST00000556433 CDK19Q9BWU1 502 aa32.72■■■□□ 2.83
ACTN1-220ENST00000556433 FAM83GA6ND36 823 aa32.71■■■□□ 2.83
ACTN1-220ENST00000556433 RALGAPBQ86X10 1494 aa32.7■■■□□ 2.83
ACTN1-220ENST00000556433 PAK3O75914 559 aaPredicted RBP32.7■■■□□ 2.83
ACTN1-220ENST00000556433 ARHGEF28Q8N1W1 1705 aaKnown RBP32.7■■■□□ 2.83
ACTN1-220ENST00000556433 TNKS1BP1Q9C0C2 1729 aaKnown RBP32.69■■■□□ 2.82
ACTN1-220ENST00000556433 VPS72Q15906 364 aa32.69■■■□□ 2.82
ACTN1-220ENST00000556433 CCDC9Q9Y3X0 531 aaKnown RBP32.67■■■□□ 2.82
ACTN1-220ENST00000556433 TRPM3Q9HCF6 1732 aaPredicted RBP32.65■■■□□ 2.82
ACTN1-220ENST00000556433 GLI3P10071 1580 aa32.64■■■□□ 2.82
ACTN1-220ENST00000556433 KIAA1210Q9ULL0 1709 aa32.63■■■□□ 2.81
ACTN1-220ENST00000556433 ATP7BP35670 1465 aa32.63■■■□□ 2.81
ACTN1-220ENST00000556433 ABCA3Q99758 1704 aa32.61■■■□□ 2.81
ACTN1-220ENST00000556433 SEPT12Q8IYM1 358 aa32.61■■■□□ 2.81
ACTN1-220ENST00000556433 L3MBTL2Q969R5 705 aa32.61■■■□□ 2.81
ACTN1-220ENST00000556433 CCDC61Q9Y6R9 512 aa32.61■■■□□ 2.81
ACTN1-220ENST00000556433 CCDC125Q86Z20 511 aa32.6■■■□□ 2.81
ACTN1-220ENST00000556433 BTG4Q9NY30 223 aa32.6■■■□□ 2.81
ACTN1-220ENST00000556433 ALS2Q96Q42 1657 aa32.59■■■□□ 2.81
ACTN1-220ENST00000556433 SIN3AQ96ST3 1273 aa32.59■■■□□ 2.81
ACTN1-220ENST00000556433 NWD2Q9ULI1 1742 aa32.57■■■□□ 2.81
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms