RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 LRRC9Q6ZRR7 1453 aa21.1■□□□□ 0.97
SYNE3-204ENST00000555759 TRAK1Q9UPV9 953 aa21.1■□□□□ 0.97
SYNE3-204ENST00000555759 PDCP20941 246 aa21.08■□□□□ 0.97
SYNE3-204ENST00000555759 AKAP17AQ02040 695 aaKnown RBP21.08■□□□□ 0.97
SYNE3-204ENST00000555759 SYNE3Q6ZMZ3 975 aa21.08■□□□□ 0.97
SYNE3-204ENST00000555759 TSPYL1Q9H0U9 437 aa21.08■□□□□ 0.97
SYNE3-204ENST00000555759 CCDC192P0DO97 292 aa21.08■□□□□ 0.97
SYNE3-204ENST00000555759 ERC2O15083 957 aa21.08■□□□□ 0.96
SYNE3-204ENST00000555759 CPLX1O14810 134 aa21.08■□□□□ 0.96
SYNE3-204ENST00000555759 IFIT2P09913 472 aaKnown RBP21.08■□□□□ 0.96
SYNE3-204ENST00000555759 CCDC47Q96A33 483 aaKnown RBP21.07■□□□□ 0.96
SYNE3-204ENST00000555759 KIF3BO15066 747 aa21.07■□□□□ 0.96
SYNE3-204ENST00000555759 NEK4P51957 841 aa21.06■□□□□ 0.96
SYNE3-204ENST00000555759 DCTN1Q14203 1278 aa21.05■□□□□ 0.96
SYNE3-204ENST00000555759 OLFM4Q6UX06 510 aa21.05■□□□□ 0.96
SYNE3-204ENST00000555759 PSMA5P28066 241 aa21.05■□□□□ 0.96
SYNE3-204ENST00000555759 TOMM22Q9NS69 142 aa21.05■□□□□ 0.96
SYNE3-204ENST00000555759 WDR33Q9C0J8 1336 aaKnown RBP21.04■□□□□ 0.96
SYNE3-204ENST00000555759 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.04■□□□□ 0.96
SYNE3-204ENST00000555759 SDF4Q9BRK5 362 aa21.04■□□□□ 0.96
SYNE3-204ENST00000555759 CT47B1P0C2W7 299 aaPredicted RBP21.04■□□□□ 0.96
SYNE3-204ENST00000555759 AMPHP49418 695 aa21.03■□□□□ 0.96
SYNE3-204ENST00000555759 PCMTD1Q96MG8 357 aaPredicted RBP21.02■□□□□ 0.96
SYNE3-204ENST00000555759 PATL2C9JE40 543 aaKnown RBP21.02■□□□□ 0.96
SYNE3-204ENST00000555759 CCDC191Q8NCU4 936 aa21.02■□□□□ 0.96
SYNE3-204ENST00000555759 TDRD9Q8NDG6 1382 aaKnown RBP21.02■□□□□ 0.96
SYNE3-204ENST00000555759 USP8P40818 1118 aa21.02■□□□□ 0.96
SYNE3-204ENST00000555759 KINO60870 393 aaKnown RBP21.01■□□□□ 0.95
SYNE3-204ENST00000555759 PPP2R1AP30153 589 aa21.01■□□□□ 0.95
SYNE3-204ENST00000555759 COG3Q96JB2 828 aa21.01■□□□□ 0.95
SYNE3-204ENST00000555759 ZMYND15Q9H091 742 aa21.01■□□□□ 0.95
SYNE3-204ENST00000555759 MCM5P33992 734 aa21■□□□□ 0.95
SYNE3-204ENST00000555759 SPC24Q8NBT2 197 aa21■□□□□ 0.95
SYNE3-204ENST00000555759 ABCF1Q8NE71 845 aaKnown RBP eCLIP21■□□□□ 0.95
SYNE3-204ENST00000555759 AEBP1Q8IUX7 1158 aa20.99■□□□□ 0.95
SYNE3-204ENST00000555759 EIF3JO75822 258 aaKnown RBP20.99■□□□□ 0.95
SYNE3-204ENST00000555759 RRP12Q5JTH9 1297 aaKnown RBP20.98■□□□□ 0.95
SYNE3-204ENST00000555759 ERLIN1O75477 346 aa20.98■□□□□ 0.95
SYNE3-204ENST00000555759 TCP11L2Q8N4U5 519 aa20.98■□□□□ 0.95
SYNE3-204ENST00000555759 C9orf78Q9NZ63 289 aaPredicted RBP20.98■□□□□ 0.95
SYNE3-204ENST00000555759 SMC2O95347 1197 aa20.97■□□□□ 0.95
SYNE3-204ENST00000555759 FIBPO43427 364 aa20.97■□□□□ 0.95
SYNE3-204ENST00000555759 CNTROBQ8N137 903 aa20.97■□□□□ 0.95
SYNE3-204ENST00000555759 PDILTQ8N807 584 aa20.97■□□□□ 0.95
SYNE3-204ENST00000555759 ERCC6Q03468 1493 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 SCAPERQ9BY12 1400 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 CLCN1P35523 988 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 FBXW7Q969H0 707 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 KIF2AO00139 706 aaPredicted RBP20.96■□□□□ 0.95
SYNE3-204ENST00000555759 VGFO15240 615 aaPredicted RBP20.96■□□□□ 0.95
SYNE3-204ENST00000555759 MARCH6O60337 910 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 TRDNQ13061 729 aa20.96■□□□□ 0.95
SYNE3-204ENST00000555759 PDIA4P13667 645 aaKnown RBP20.96■□□□□ 0.95
SYNE3-204ENST00000555759 NEXNQ0ZGT2 675 aa20.95■□□□□ 0.94
SYNE3-204ENST00000555759 CCDC27Q2M243 656 aa20.95■□□□□ 0.94
SYNE3-204ENST00000555759 BCAR3O75815 825 aa20.95■□□□□ 0.94
SYNE3-204ENST00000555759 G3BP1Q13283 466 aaKnown RBP eCLIP20.95■□□□□ 0.94
SYNE3-204ENST00000555759 SAFBQ15424 915 aaKnown RBP eCLIP20.95■□□□□ 0.94
SYNE3-204ENST00000555759 DEF6Q9H4E7 631 aa20.95■□□□□ 0.94
SYNE3-204ENST00000555759 WDR97A6NE52 1622 aa20.95■□□□□ 0.94
SYNE3-204ENST00000555759 FKBP5Q13451 457 aaPredicted RBP20.94■□□□□ 0.94
SYNE3-204ENST00000555759 BCL11BQ9C0K0 894 aaPredicted RBP20.94■□□□□ 0.94
SYNE3-204ENST00000555759 CALCOCO1Q9P1Z2 691 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 FYCO1Q9BQS8 1478 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 MVPQ14764 893 aaKnown RBP20.94■□□□□ 0.94
SYNE3-204ENST00000555759 CAGE1Q8TC20 777 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 SMARCE1Q969G3 411 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 DYNC1I1O14576 645 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 WDR63Q8IWG1 891 aa20.94■□□□□ 0.94
SYNE3-204ENST00000555759 C11orf95C9JLR9 678 aaPredicted RBP20.93■□□□□ 0.94
SYNE3-204ENST00000555759 ZNF396Q96N95 335 aaPredicted RBP20.93■□□□□ 0.94
SYNE3-204ENST00000555759 TNMDQ9H2S6 317 aa20.93■□□□□ 0.94
SYNE3-204ENST00000555759 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP20.92■□□□□ 0.94
SYNE3-204ENST00000555759 PDS5BQ9NTI5 1447 aa20.92■□□□□ 0.94
SYNE3-204ENST00000555759 CCDC184Q52MB2 194 aa20.92■□□□□ 0.94
SYNE3-204ENST00000555759 KIAA0754O94854 1291 aa20.91■□□□□ 0.94
SYNE3-204ENST00000555759 KRT85P78386 507 aa20.91■□□□□ 0.94
SYNE3-204ENST00000555759 PDE4CQ08493 712 aa20.91■□□□□ 0.94
SYNE3-204ENST00000555759 GNAI3P08754 354 aa20.91■□□□□ 0.94
SYNE3-204ENST00000555759 ZNF330Q9Y3S2 320 aaPredicted RBP20.91■□□□□ 0.94
SYNE3-204ENST00000555759 HIP1O00291 1037 aa20.91■□□□□ 0.94
SYNE3-204ENST00000555759 AXDND1Q5T1B0 1012 aaPredicted RBP20.9■□□□□ 0.94
SYNE3-204ENST00000555759 CHD1LQ86WJ1 897 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 PLEKHH2Q8IVE3 1493 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 CASKIN1Q8WXD9 1431 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 CSB-PGBD3P0DP91 1061 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 FILIP1LQ4L180 1135 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 CGNQ9P2M7 1197 aaKnown RBP20.9■□□□□ 0.94
SYNE3-204ENST00000555759 ERICH3Q5RHP9 1530 aa20.9■□□□□ 0.94
SYNE3-204ENST00000555759 CBX1P83916 185 aa20.89■□□□□ 0.94
SYNE3-204ENST00000555759 NGDNQ8NEJ9 315 aaKnown RBP20.89■□□□□ 0.93
SYNE3-204ENST00000555759 EXOSC9Q06265 439 aaKnown RBP20.89■□□□□ 0.93
SYNE3-204ENST00000555759 DDX58O95786 925 aaKnown RBP20.88■□□□□ 0.93
SYNE3-204ENST00000555759 MYO6Q9UM54 1294 aa20.88■□□□□ 0.93
SYNE3-204ENST00000555759 TEFQ10587 303 aa20.87■□□□□ 0.93
SYNE3-204ENST00000555759 NCOA2Q15596 1464 aa20.87■□□□□ 0.93
SYNE3-204ENST00000555759 ANKRD1Q15327 319 aa20.87■□□□□ 0.93
SYNE3-204ENST00000555759 CBFA2T2O43439 604 aa20.87■□□□□ 0.93
SYNE3-204ENST00000555759 PIP4K2AP48426 406 aaPredicted RBP20.87■□□□□ 0.93
SYNE3-204ENST00000555759 NAP1L1P55209 391 aaKnown RBP20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms