RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 ABCC3O15438 1527 aa16.39■□□□□ 0.21
SFSWAP-208ENST00000539506 SIGLEC1Q9BZZ2 1709 aa16.39■□□□□ 0.21
SFSWAP-208ENST00000539506 HECW2Q9P2P5 1572 aa16.39■□□□□ 0.21
SFSWAP-208ENST00000539506 KDM2BQ8NHM5 1336 aa16.38■□□□□ 0.21
SFSWAP-208ENST00000539506 TNNT2P45379 298 aaPredicted RBP16.37■□□□□ 0.21
SFSWAP-208ENST00000539506 NSD3Q9BZ95 1437 aa16.37■□□□□ 0.21
SFSWAP-208ENST00000539506 PPM1GO15355 546 aaPredicted RBP16.36■□□□□ 0.21
SFSWAP-208ENST00000539506 FRAT2O75474 233 aaPredicted RBP16.36■□□□□ 0.21
SFSWAP-208ENST00000539506 BCAR3O75815 825 aa16.36■□□□□ 0.21
SFSWAP-208ENST00000539506 ZC3H13Q5T200 1668 aaKnown RBP16.36■□□□□ 0.21
SFSWAP-208ENST00000539506 GSE1Q14687 1217 aa16.36■□□□□ 0.21
SFSWAP-208ENST00000539506 QRICH2Q9H0J4 1663 aa16.35■□□□□ 0.21
SFSWAP-208ENST00000539506 MS4A1P11836 297 aa16.35■□□□□ 0.21
SFSWAP-208ENST00000539506 SENP3Q9H4L4 574 aaPredicted RBP16.34■□□□□ 0.21
SFSWAP-208ENST00000539506 POLR3AO14802 1390 aaPredicted RBP16.34■□□□□ 0.21
SFSWAP-208ENST00000539506 CFAP74Q9C0B2 1584 aa16.33■□□□□ 0.21
SFSWAP-208ENST00000539506 NKTRP30414 1462 aaKnown RBP16.33■□□□□ 0.2
SFSWAP-208ENST00000539506 CAMSAP1Q5T5Y3 1602 aa16.32■□□□□ 0.2
SFSWAP-208ENST00000539506 SHPRHQ149N8 1683 aa16.32■□□□□ 0.2
SFSWAP-208ENST00000539506 MORC1Q86VD1 984 aa16.32■□□□□ 0.2
SFSWAP-208ENST00000539506 RPGRIP1LQ68CZ1 1315 aa16.31■□□□□ 0.2
SFSWAP-208ENST00000539506 WWC1Q8IX03 1113 aa16.31■□□□□ 0.2
SFSWAP-208ENST00000539506 PIK3C2BO00750 1634 aa16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 E9PSI1 815 aa16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 IDI1Q13907 227 aa16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 NEXMIFQ5QGS0 1516 aa16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 DIP2CQ9Y2E4 1556 aa16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 RRP7AQ9Y3A4 280 aaKnown RBP16.3■□□□□ 0.2
SFSWAP-208ENST00000539506 GLI2P10070 1586 aa16.29■□□□□ 0.2
SFSWAP-208ENST00000539506 TULP4Q9NRJ4 1543 aa16.29■□□□□ 0.2
SFSWAP-208ENST00000539506 USP35Q9P2H5 1018 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 YEATS2Q9ULM3 1422 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 SAFB2Q14151 953 aaKnown RBP eCLIP16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 NEUROD2Q15784 382 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 MTHFSP49914 203 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 DDRGK1Q96HY6 314 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 CABP2Q9NPB3 220 aa16.28■□□□□ 0.2
SFSWAP-208ENST00000539506 NEO1Q92859 1461 aa16.27■□□□□ 0.2
SFSWAP-208ENST00000539506 CENPQQ7L2Z9 268 aaPredicted RBP16.27■□□□□ 0.2
SFSWAP-208ENST00000539506 SPRYD3Q8NCJ5 442 aa16.27■□□□□ 0.19
SFSWAP-208ENST00000539506 SLKQ9H2G2 1235 aaPredicted RBP16.26■□□□□ 0.19
SFSWAP-208ENST00000539506 ARHGEF28Q8N1W1 1705 aaKnown RBP16.26■□□□□ 0.19
SFSWAP-208ENST00000539506 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.26■□□□□ 0.19
SFSWAP-208ENST00000539506 VGFO15240 615 aaPredicted RBP16.25■□□□□ 0.19
SFSWAP-208ENST00000539506 C8orf34Q49A92 452 aa16.25■□□□□ 0.19
SFSWAP-208ENST00000539506 TCP11L2Q8N4U5 519 aa16.25■□□□□ 0.19
SFSWAP-208ENST00000539506 IQSEC2Q5JU85 1478 aa16.24■□□□□ 0.19
SFSWAP-208ENST00000539506 RICTORQ6R327 1708 aa16.24■□□□□ 0.19
SFSWAP-208ENST00000539506 STK26Q9P289 416 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 CGNL1Q0VF96 1302 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 IGHDP01880 384 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 EVC2Q86UK5 1308 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 RUNDC1Q96C34 613 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 USP32Q8NFA0 1604 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 ARHGAP31Q2M1Z3 1444 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 SEC24BO95487 1268 aa16.23■□□□□ 0.19
SFSWAP-208ENST00000539506 FAM161AQ3B820 660 aa16.22■□□□□ 0.19
SFSWAP-208ENST00000539506 ANKRD36BQ8N2N9 1353 aa16.22■□□□□ 0.19
SFSWAP-208ENST00000539506 PANK1Q8TE04 598 aa16.22■□□□□ 0.19
SFSWAP-208ENST00000539506 NGEFQ8N5V2 710 aa16.21■□□□□ 0.19
SFSWAP-208ENST00000539506 FBXO31Q5XUX0 539 aaPredicted RBP16.21■□□□□ 0.18
SFSWAP-208ENST00000539506 TNNQ9UQP3 1299 aa16.21■□□□□ 0.18
SFSWAP-208ENST00000539506 MYO5BQ9ULV0 1848 aa16.2■□□□□ 0.18
SFSWAP-208ENST00000539506 PUS7Q96PZ0 661 aaKnown RBP16.19■□□□□ 0.18
SFSWAP-208ENST00000539506 POGKQ9P215 609 aa16.19■□□□□ 0.18
SFSWAP-208ENST00000539506 COG6Q9Y2V7 657 aa16.19■□□□□ 0.18
SFSWAP-208ENST00000539506 A0A1W2PP64 1363 aa16.19■□□□□ 0.18
SFSWAP-208ENST00000539506 RARSP54136 660 aaKnown RBP16.18■□□□□ 0.18
SFSWAP-208ENST00000539506 ZFYVE9O95405 1425 aa16.18■□□□□ 0.18
SFSWAP-208ENST00000539506 SLC52A1Q9NWF4 448 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 TMEM131LA2VDJ0 1609 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 PDE3AQ14432 1141 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 PTPRMP28827 1452 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 RLBP1P12271 317 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 GGNBP2Q9H3C7 697 aa16.17■□□□□ 0.18
SFSWAP-208ENST00000539506 BCL2L13Q9BXK5 485 aa16.16■□□□□ 0.18
SFSWAP-208ENST00000539506 CANXP27824 592 aaKnown RBP16.16■□□□□ 0.18
SFSWAP-208ENST00000539506 MINK1Q8N4C8 1332 aaPredicted RBP16.16■□□□□ 0.18
SFSWAP-208ENST00000539506 U2AF1L5P0DN76 240 aaPredicted RBP16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 SRPK2P78362 688 aaKnown RBP16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 U2AF1Q01081 240 aaKnown RBP eCLIP16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 PRAM1Q96QH2 718 aa16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 PREX1Q8TCU6 1659 aa16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 CD163L1Q9NR16 1453 aa16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 WDR63Q8IWG1 891 aa16.15■□□□□ 0.18
SFSWAP-208ENST00000539506 GZF1Q9H116 711 aaPredicted RBP16.14■□□□□ 0.18
SFSWAP-208ENST00000539506 ABCC11Q96J66 1382 aa16.14■□□□□ 0.17
SFSWAP-208ENST00000539506 CCDC27Q2M243 656 aa16.14■□□□□ 0.17
SFSWAP-208ENST00000539506 CYB5RLQ6IPT4 315 aa16.14■□□□□ 0.17
SFSWAP-208ENST00000539506 CLUAP1Q96AJ1 413 aa16.14■□□□□ 0.17
SFSWAP-208ENST00000539506 CFAP53Q96M91 514 aa16.14■□□□□ 0.17
SFSWAP-208ENST00000539506 NSD2O96028 1365 aa16.13■□□□□ 0.17
SFSWAP-208ENST00000539506 FYB1O15117 783 aa16.13■□□□□ 0.17
SFSWAP-208ENST00000539506 PLEKHF1Q96S99 279 aa16.12■□□□□ 0.17
SFSWAP-208ENST00000539506 NLRP1Q9C000 1473 aa16.12■□□□□ 0.17
SFSWAP-208ENST00000539506 YTHDC2Q9H6S0 1430 aaKnown RBP16.12■□□□□ 0.17
SFSWAP-208ENST00000539506 PCDHB15Q9Y5E8 787 aa16.11■□□□□ 0.17
SFSWAP-208ENST00000539506 COL3A1P02461 1466 aaPredicted RBP16.11■□□□□ 0.17
SFSWAP-208ENST00000539506 TSR2Q969E8 191 aaKnown RBP16.1■□□□□ 0.17
SFSWAP-208ENST00000539506 ADGRB2O60241 1585 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms