RNA–Protein interactions for RNA: ENST00000539442.1

LEMD3-202, Transcript of LEM domain containing 3, humanhuman

TSL 2

Gene LEMD3, Length 932 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-202ENST00000539442 EVX2Q03828 476 aa14.9□□□□□ -0.02
LEMD3-202ENST00000539442 DLC1Q96QB1 1528 aa14.9□□□□□ -0.02
LEMD3-202ENST00000539442 POLR1AO95602 1720 aaPredicted RBP14.89□□□□□ -0.03
LEMD3-202ENST00000539442 METP08581 1390 aa14.89□□□□□ -0.03
LEMD3-202ENST00000539442 ABCC11Q96J66 1382 aa14.89□□□□□ -0.03
LEMD3-202ENST00000539442 PIK3R4Q99570 1358 aa14.89□□□□□ -0.03
LEMD3-202ENST00000539442 TRAK1Q9UPV9 953 aa14.89□□□□□ -0.03
LEMD3-202ENST00000539442 TECPR2O15040 1411 aa14.89□□□□□ -0.03
LEMD3-202ENST00000539442 NPHP4O75161 1426 aaPredicted RBP14.89□□□□□ -0.03
LEMD3-202ENST00000539442 TESK2Q96S53 571 aa14.88□□□□□ -0.03
LEMD3-202ENST00000539442 CENPJQ9HC77 1338 aaPredicted RBP14.88□□□□□ -0.03
LEMD3-202ENST00000539442 ARHGEF28Q8N1W1 1705 aaKnown RBP14.87□□□□□ -0.03
LEMD3-202ENST00000539442 KNDC1Q76NI1 1749 aa14.86□□□□□ -0.03
LEMD3-202ENST00000539442 SIRT1Q96EB6 747 aa14.86□□□□□ -0.03
LEMD3-202ENST00000539442 SLC26A8Q96RN1 970 aa14.86□□□□□ -0.03
LEMD3-202ENST00000539442 CPS1P31327 1500 aa14.86□□□□□ -0.03
LEMD3-202ENST00000539442 CCDC7Q96M83 1385 aa14.85□□□□□ -0.03
LEMD3-202ENST00000539442 FAM135BQ49AJ0 1406 aa14.85□□□□□ -0.03
LEMD3-202ENST00000539442 PITPNM1O00562 1244 aa14.85□□□□□ -0.03
LEMD3-202ENST00000539442 TMF1P82094 1093 aa14.85□□□□□ -0.03
LEMD3-202ENST00000539442 WASHC2AQ641Q2 1341 aa14.85□□□□□ -0.03
LEMD3-202ENST00000539442 STK26Q9P289 416 aa14.84□□□□□ -0.03
LEMD3-202ENST00000539442 KIF7Q2M1P5 1343 aa14.84□□□□□ -0.03
LEMD3-202ENST00000539442 NCKAP5LQ9HCH0 1330 aa14.84□□□□□ -0.03
LEMD3-202ENST00000539442 C11orf95C9JLR9 678 aaPredicted RBP14.83□□□□□ -0.04
LEMD3-202ENST00000539442 CDCA8Q53HL2 280 aa14.83□□□□□ -0.04
LEMD3-202ENST00000539442 PTCH1Q13635 1447 aa14.83□□□□□ -0.04
LEMD3-202ENST00000539442 PTPRUQ92729 1446 aa14.83□□□□□ -0.04
LEMD3-202ENST00000539442 QRICH2Q9H0J4 1663 aa14.82□□□□□ -0.04
LEMD3-202ENST00000539442 HSPA2P54652 639 aa14.81□□□□□ -0.04
LEMD3-202ENST00000539442 PRAM1Q96QH2 718 aa14.81□□□□□ -0.04
LEMD3-202ENST00000539442 POGKQ9P215 609 aa14.81□□□□□ -0.04
LEMD3-202ENST00000539442 DISP3Q9P2K9 1392 aa14.81□□□□□ -0.04
LEMD3-202ENST00000539442 XRN1Q8IZH2 1706 aaKnown RBP14.8□□□□□ -0.04
LEMD3-202ENST00000539442 AMOTL2Q9Y2J4 779 aa14.8□□□□□ -0.04
LEMD3-202ENST00000539442 ROBO2Q9HCK4 1378 aa14.78□□□□□ -0.04
LEMD3-202ENST00000539442 DIEXFQ68CQ4 756 aaKnown RBP14.78□□□□□ -0.04
LEMD3-202ENST00000539442 PUS7Q96PZ0 661 aaKnown RBP14.78□□□□□ -0.04
LEMD3-202ENST00000539442 ZBTB12Q9Y330 459 aaPredicted RBP14.78□□□□□ -0.04
LEMD3-202ENST00000539442 NWD1Q149M9 1564 aa14.77□□□□□ -0.04
LEMD3-202ENST00000539442 EVC2Q86UK5 1308 aa14.77□□□□□ -0.04
LEMD3-202ENST00000539442 PLEKHH1Q9ULM0 1364 aa14.76□□□□□ -0.05
LEMD3-202ENST00000539442 CHD2O14647 1828 aaKnown RBP14.76□□□□□ -0.05
LEMD3-202ENST00000539442 DDX10Q13206 875 aaKnown RBP14.76□□□□□ -0.05
LEMD3-202ENST00000539442 TULP4Q9NRJ4 1543 aa14.76□□□□□ -0.05
LEMD3-202ENST00000539442 STRCQ7RTU9 1775 aa14.75□□□□□ -0.05
LEMD3-202ENST00000539442 KCNA6P17658 529 aa14.75□□□□□ -0.05
LEMD3-202ENST00000539442 WAPLQ7Z5K2 1190 aa14.75□□□□□ -0.05
LEMD3-202ENST00000539442 ADGRB2O60241 1585 aa14.74□□□□□ -0.05
LEMD3-202ENST00000539442 SAFB2Q14151 953 aaKnown RBP eCLIP14.74□□□□□ -0.05
LEMD3-202ENST00000539442 MINK1Q8N4C8 1332 aaPredicted RBP14.73□□□□□ -0.05
LEMD3-202ENST00000539442 POLR3GLQ9BT43 218 aa14.73□□□□□ -0.05
LEMD3-202ENST00000539442 NKTRP30414 1462 aaKnown RBP14.73□□□□□ -0.05
LEMD3-202ENST00000539442 ATAD2Q6PL18 1390 aa14.72□□□□□ -0.05
LEMD3-202ENST00000539442 NINLQ9Y2I6 1382 aa14.71□□□□□ -0.06
LEMD3-202ENST00000539442 WASLO00401 505 aaPredicted RBP14.69□□□□□ -0.06
LEMD3-202ENST00000539442 SIPA1L2Q9P2F8 1722 aaPredicted RBP14.69□□□□□ -0.06
LEMD3-202ENST00000539442 SRPK2P78362 688 aaKnown RBP14.68□□□□□ -0.06
LEMD3-202ENST00000539442 CDK19Q9BWU1 502 aa14.68□□□□□ -0.06
LEMD3-202ENST00000539442 MYOM1P52179 1685 aa14.68□□□□□ -0.06
LEMD3-202ENST00000539442 NCOA3Q9Y6Q9 1424 aa14.67□□□□□ -0.06
LEMD3-202ENST00000539442 CABP2Q9NPB3 220 aa14.67□□□□□ -0.06
LEMD3-202ENST00000539442 ADGRL3Q9HAR2 1447 aa14.66□□□□□ -0.06
LEMD3-202ENST00000539442 CDC42BPGQ6DT37 1551 aa14.65□□□□□ -0.06
LEMD3-202ENST00000539442 ATP7BP35670 1465 aa14.63□□□□□ -0.07
LEMD3-202ENST00000539442 GABBR2O75899 941 aa14.63□□□□□ -0.07
LEMD3-202ENST00000539442 PROSER2Q86WR7 435 aaPredicted RBP14.63□□□□□ -0.07
LEMD3-202ENST00000539442 PANK3Q9H999 370 aa14.63□□□□□ -0.07
LEMD3-202ENST00000539442 ANKARQ7Z5J8 1434 aa14.63□□□□□ -0.07
LEMD3-202ENST00000539442 NALCNQ8IZF0 1738 aa14.63□□□□□ -0.07
LEMD3-202ENST00000539442 ANKRD36BQ8N2N9 1353 aa14.62□□□□□ -0.07
LEMD3-202ENST00000539442 ANP32CO43423 234 aa14.62□□□□□ -0.07
LEMD3-202ENST00000539442 TMC1Q8TDI8 760 aa14.62□□□□□ -0.07
LEMD3-202ENST00000539442 STRCP1A6NGW2 1772 aa14.62□□□□□ -0.07
LEMD3-202ENST00000539442 PER1O15534 1290 aaPredicted RBP14.61□□□□□ -0.07
LEMD3-202ENST00000539442 SLC12A5Q9H2X9 1139 aa14.61□□□□□ -0.07
LEMD3-202ENST00000539442 CCDC61Q9Y6R9 512 aa14.61□□□□□ -0.07
LEMD3-202ENST00000539442 TMEM94Q12767 1356 aa14.6□□□□□ -0.07
LEMD3-202ENST00000539442 DCCP43146 1447 aa14.6□□□□□ -0.07
LEMD3-202ENST00000539442 NUDT16Q96DE0 195 aaKnown RBP14.6□□□□□ -0.07
LEMD3-202ENST00000539442 ZNF335Q9H4Z2 1342 aaPredicted RBP14.6□□□□□ -0.07
LEMD3-202ENST00000539442 PPIP5K1Q6PFW1 1433 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 TOPAZ1Q8N9V7 1692 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 FMN2Q9NZ56 1722 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 C14orf37Q86TY3 774 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 TERF2IPQ9NYB0 399 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 PRR36Q9H6K5 1346 aa14.59□□□□□ -0.07
LEMD3-202ENST00000539442 C19orf44Q9H6X5 657 aa14.58□□□□□ -0.08
LEMD3-202ENST00000539442 CABP1Q9NZU7 370 aa14.58□□□□□ -0.08
LEMD3-202ENST00000539442 KNSTRNQ9Y448 316 aa14.58□□□□□ -0.08
LEMD3-202ENST00000539442 KTN1Q86UP2 1357 aaKnown RBP14.58□□□□□ -0.08
LEMD3-202ENST00000539442 NPC1L1Q9UHC9 1359 aa14.58□□□□□ -0.08
LEMD3-202ENST00000539442 CD163L1Q9NR16 1453 aa14.57□□□□□ -0.08
LEMD3-202ENST00000539442 LRRC7Q96NW7 1537 aa14.57□□□□□ -0.08
LEMD3-202ENST00000539442 USP32Q8NFA0 1604 aa14.57□□□□□ -0.08
LEMD3-202ENST00000539442 HDGFL2Q7Z4V5 671 aaPredicted RBP14.57□□□□□ -0.08
LEMD3-202ENST00000539442 A0A1W2PP64 1363 aa14.57□□□□□ -0.08
LEMD3-202ENST00000539442 ITSN1Q15811 1721 aa14.56□□□□□ -0.08
LEMD3-202ENST00000539442 PLEKHG3A1L390 1219 aa14.56□□□□□ -0.08
LEMD3-202ENST00000539442 MIER1Q8N108 512 aa14.56□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms