RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.4□□□□□ -0.1
USP28-205ENST00000537706 LRPPRCP42704 1394 aaKnown RBP14.4□□□□□ -0.1
USP28-205ENST00000537706 HAP1P54257 671 aaPredicted RBP14.4□□□□□ -0.1
USP28-205ENST00000537706 EN1Q05925 392 aaPredicted RBP14.4□□□□□ -0.1
USP28-205ENST00000537706 CROCC2H7BZ55 1655 aa14.4□□□□□ -0.1
USP28-205ENST00000537706 GLI3P10071 1580 aa14.4□□□□□ -0.1
USP28-205ENST00000537706 VPS72Q15906 364 aa14.39□□□□□ -0.11
USP28-205ENST00000537706 SLIT2O94813 1529 aa14.38□□□□□ -0.11
USP28-205ENST00000537706 PTPN23Q9H3S7 1636 aa14.37□□□□□ -0.11
USP28-205ENST00000537706 METP08581 1390 aa14.37□□□□□ -0.11
USP28-205ENST00000537706 ONECUT3O60422 494 aaPredicted RBP14.37□□□□□ -0.11
USP28-205ENST00000537706 ZNF326Q5BKZ1 582 aaKnown RBP14.37□□□□□ -0.11
USP28-205ENST00000537706 ESCO1Q5FWF5 840 aa14.37□□□□□ -0.11
USP28-205ENST00000537706 NALCNQ8IZF0 1738 aa14.35□□□□□ -0.11
USP28-205ENST00000537706 MARF1Q9Y4F3 1742 aaKnown RBP14.35□□□□□ -0.11
USP28-205ENST00000537706 NINLQ9Y2I6 1382 aa14.33□□□□□ -0.11
USP28-205ENST00000537706 NBPF8Q3BBV2 869 aa14.33□□□□□ -0.12
USP28-205ENST00000537706 NBPF14Q5TI25 921 aa14.33□□□□□ -0.12
USP28-205ENST00000537706 BRWD3Q6RI45 1802 aa14.33□□□□□ -0.12
USP28-205ENST00000537706 SPON1Q9HCB6 807 aa14.32□□□□□ -0.12
USP28-205ENST00000537706 ANKRD50Q9ULJ7 1429 aa14.32□□□□□ -0.12
USP28-205ENST00000537706 ADGRL2O95490 1459 aa14.31□□□□□ -0.12
USP28-205ENST00000537706 FOXO3O43524 673 aa14.31□□□□□ -0.12
USP28-205ENST00000537706 C1QTNF8P60827 252 aa14.31□□□□□ -0.12
USP28-205ENST00000537706 XPCQ01831 940 aaPredicted RBP14.31□□□□□ -0.12
USP28-205ENST00000537706 ZNF784Q8NCA9 323 aaPredicted RBP14.31□□□□□ -0.12
USP28-205ENST00000537706 DISP2A7MBM2 1401 aa14.31□□□□□ -0.12
USP28-205ENST00000537706 EZH2Q15910 746 aaKnown RBP14.31□□□□□ -0.12
USP28-205ENST00000537706 PXDNQ92626 1479 aa14.3□□□□□ -0.12
USP28-205ENST00000537706 KANK4Q5T7N3 995 aaPredicted RBP14.3□□□□□ -0.12
USP28-205ENST00000537706 PARD3Q8TEW0 1356 aa14.3□□□□□ -0.12
USP28-205ENST00000537706 NRXN3Q9Y4C0 1643 aa14.3□□□□□ -0.12
USP28-205ENST00000537706 RGPD1P0DJD0 1748 aa14.29□□□□□ -0.12
USP28-205ENST00000537706 HFM1A2PYH4 1435 aa14.28□□□□□ -0.12
USP28-205ENST00000537706 FAM98CQ17RN3 349 aaKnown RBP14.27□□□□□ -0.12
USP28-205ENST00000537706 ADGRB2O60241 1585 aa14.27□□□□□ -0.12
USP28-205ENST00000537706 SPATA31A3Q5VYP0 1347 aa14.27□□□□□ -0.13
USP28-205ENST00000537706 KCNQ2O43526 872 aa14.26□□□□□ -0.13
USP28-205ENST00000537706 IQGAP3Q86VI3 1631 aa14.26□□□□□ -0.13
USP28-205ENST00000537706 USP32Q8NFA0 1604 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 ROBO2Q9HCK4 1378 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 EP400Q96L91 3159 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 CAMKK2Q96RR4 588 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 PSME1Q06323 249 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 VPS8Q8N3P4 1428 aa14.25□□□□□ -0.13
USP28-205ENST00000537706 CCDC144AA2RUR9 1427 aa14.24□□□□□ -0.13
USP28-205ENST00000537706 APLP2Q06481 763 aa14.24□□□□□ -0.13
USP28-205ENST00000537706 APBA3O96018 575 aa14.23□□□□□ -0.13
USP28-205ENST00000537706 FAM196AQ6ZSG2 479 aa14.23□□□□□ -0.13
USP28-205ENST00000537706 KRT28Q7Z3Y7 464 aa14.22□□□□□ -0.13
USP28-205ENST00000537706 E9PCH4 1651 aa14.21□□□□□ -0.13
USP28-205ENST00000537706 NWD2Q9ULI1 1742 aa14.21□□□□□ -0.13
USP28-205ENST00000537706 VGFO15240 615 aaPredicted RBP14.21□□□□□ -0.14
USP28-205ENST00000537706 CDC42BPGQ6DT37 1551 aa14.2□□□□□ -0.14
USP28-205ENST00000537706 PLEKHG5O94827 1062 aa14.2□□□□□ -0.14
USP28-205ENST00000537706 TRIM37O94972 964 aa14.2□□□□□ -0.14
USP28-205ENST00000537706 FAM182BQ5T319 152 aa14.2□□□□□ -0.14
USP28-205ENST00000537706 LMOD2Q6P5Q4 547 aa14.19□□□□□ -0.14
USP28-205ENST00000537706 PRAG1Q86YV5 1406 aa14.19□□□□□ -0.14
USP28-205ENST00000537706 TNS3Q68CZ2 1445 aa14.18□□□□□ -0.14
USP28-205ENST00000537706 ARHGEF10O15013 1369 aa14.18□□□□□ -0.14
USP28-205ENST00000537706 NUTM2FA1L443 756 aa14.18□□□□□ -0.14
USP28-205ENST00000537706 NUP155O75694 1391 aa14.18□□□□□ -0.14
USP28-205ENST00000537706 GIGYF1O75420 1035 aaPredicted RBP14.17□□□□□ -0.14
USP28-205ENST00000537706 FAM50AQ14320 339 aaKnown RBP14.17□□□□□ -0.14
USP28-205ENST00000537706 CABLES1Q8TDN4 633 aa14.17□□□□□ -0.14
USP28-205ENST00000537706 PLCH1Q4KWH8 1693 aa14.17□□□□□ -0.14
USP28-205ENST00000537706 FAM83GA6ND36 823 aa14.17□□□□□ -0.14
USP28-205ENST00000537706 BTG4Q9NY30 223 aa14.17□□□□□ -0.14
USP28-205ENST00000537706 NAIPQ13075 1403 aa14.16□□□□□ -0.14
USP28-205ENST00000537706 TNS1Q9HBL0 1735 aaKnown RBP14.14□□□□□ -0.15
USP28-205ENST00000537706 NEXMIFQ5QGS0 1516 aa14.14□□□□□ -0.15
USP28-205ENST00000537706 SPATA31A5Q5VU36 1347 aa14.14□□□□□ -0.15
USP28-205ENST00000537706 SPATA31A7Q8IWB4 1347 aa14.14□□□□□ -0.15
USP28-205ENST00000537706 SBNO1A3KN83 1393 aa14.14□□□□□ -0.15
USP28-205ENST00000537706 KIF1AQ12756 1690 aa14.14□□□□□ -0.15
USP28-205ENST00000537706 PDE3BQ13370 1112 aa14.11□□□□□ -0.15
USP28-205ENST00000537706 PHF8Q9UPP1 1060 aa14.11□□□□□ -0.15
USP28-205ENST00000537706 RPGRIP1LQ68CZ1 1315 aa14.1□□□□□ -0.15
USP28-205ENST00000537706 RRBP1Q9P2E9 1410 aaKnown RBP14.1□□□□□ -0.15
USP28-205ENST00000537706 C11orf95C9JLR9 678 aaPredicted RBP14.09□□□□□ -0.15
USP28-205ENST00000537706 CAMTA1Q9Y6Y1 1673 aa14.09□□□□□ -0.15
USP28-205ENST00000537706 RREB1Q92766 1687 aa14.08□□□□□ -0.16
USP28-205ENST00000537706 THSD7AQ9UPZ6 1657 aa14.07□□□□□ -0.16
USP28-205ENST00000537706 NUP188Q5SRE5 1749 aa14.06□□□□□ -0.16
USP28-205ENST00000537706 NRAPQ86VF7 1730 aa14.06□□□□□ -0.16
USP28-205ENST00000537706 STK26Q9P289 416 aa14.06□□□□□ -0.16
USP28-205ENST00000537706 COL14A1Q05707 1796 aaKnown RBP14.06□□□□□ -0.16
USP28-205ENST00000537706 WAPLQ7Z5K2 1190 aa14.05□□□□□ -0.16
USP28-205ENST00000537706 PRDM11Q9NQV5 511 aa14.05□□□□□ -0.16
USP28-205ENST00000537706 ROCK1Q13464 1354 aa14.05□□□□□ -0.16
USP28-205ENST00000537706 SPATA31A1Q5TZJ5 1347 aa14.05□□□□□ -0.16
USP28-205ENST00000537706 NRKQ7Z2Y5 1582 aa14.04□□□□□ -0.16
USP28-205ENST00000537706 SYT17Q9BSW7 474 aa14.04□□□□□ -0.16
USP28-205ENST00000537706 ZBTB7AO95365 584 aa14.03□□□□□ -0.16
USP28-205ENST00000537706 FHDC1Q9C0D6 1143 aaPredicted RBP14.03□□□□□ -0.16
USP28-205ENST00000537706 ABCA3Q99758 1704 aa14.02□□□□□ -0.17
USP28-205ENST00000537706 TECPR2O15040 1411 aa14.02□□□□□ -0.17
USP28-205ENST00000537706 GPR162Q16538 588 aa14.02□□□□□ -0.17
USP28-205ENST00000537706 BCL11BQ9C0K0 894 aaPredicted RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms