RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 CABP2Q9NPB3 220 aa17.7■□□□□ 0.42
VPS33B-202ENST00000535906 ZNF521Q96K83 1311 aa17.7■□□□□ 0.42
VPS33B-202ENST00000535906 STAG3Q9UJ98 1225 aa17.7■□□□□ 0.42
VPS33B-202ENST00000535906 MORC1Q86VD1 984 aa17.69■□□□□ 0.42
VPS33B-202ENST00000535906 PTPRMP28827 1452 aa17.68■□□□□ 0.42
VPS33B-202ENST00000535906 MSH5O43196 834 aa17.68■□□□□ 0.42
VPS33B-202ENST00000535906 TNNT2P45379 298 aaPredicted RBP17.68■□□□□ 0.42
VPS33B-202ENST00000535906 YTHDC2Q9H6S0 1430 aaKnown RBP17.67■□□□□ 0.42
VPS33B-202ENST00000535906 POLR3AO14802 1390 aaPredicted RBP17.67■□□□□ 0.42
VPS33B-202ENST00000535906 SPATA31D1Q6ZQQ2 1576 aa17.67■□□□□ 0.42
VPS33B-202ENST00000535906 EXOC6Q8TAG9 804 aa17.67■□□□□ 0.42
VPS33B-202ENST00000535906 USP32Q8NFA0 1604 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 ALKQ9UM73 1620 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 ANKRD36BQ8N2N9 1353 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 ARHGEF40Q8TER5 1519 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 CGNL1Q0VF96 1302 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 APAF1O14727 1248 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 DUSP27Q5VZP5 1158 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 PRAM1Q96QH2 718 aa17.66■□□□□ 0.42
VPS33B-202ENST00000535906 A2ML1A8K2U0 1454 aa17.65■□□□□ 0.42
VPS33B-202ENST00000535906 GOLGA2Q08379 1002 aa17.64■□□□□ 0.42
VPS33B-202ENST00000535906 PLIN1O60240 522 aa17.64■□□□□ 0.41
VPS33B-202ENST00000535906 MINK1Q8N4C8 1332 aaPredicted RBP17.64■□□□□ 0.41
VPS33B-202ENST00000535906 SRPK2P78362 688 aaKnown RBP17.63■□□□□ 0.41
VPS33B-202ENST00000535906 POGKQ9P215 609 aa17.62■□□□□ 0.41
VPS33B-202ENST00000535906 SHPRHQ149N8 1683 aa17.61■□□□□ 0.41
VPS33B-202ENST00000535906 SLFN5Q08AF3 891 aa17.61■□□□□ 0.41
VPS33B-202ENST00000535906 A0A1W2PP64 1363 aa17.6■□□□□ 0.41
VPS33B-202ENST00000535906 RIMS2Q9UQ26 1411 aa17.6■□□□□ 0.41
VPS33B-202ENST00000535906 MTHFSP49914 203 aa17.6■□□□□ 0.41
VPS33B-202ENST00000535906 SPINK5Q9NQ38 1064 aaPredicted RBP17.6■□□□□ 0.41
VPS33B-202ENST00000535906 ZMYM3Q14202 1370 aa17.6■□□□□ 0.41
VPS33B-202ENST00000535906 NINLQ9Y2I6 1382 aa17.59■□□□□ 0.41
VPS33B-202ENST00000535906 TRMT2AQ8IZ69 625 aaKnown RBP17.59■□□□□ 0.41
VPS33B-202ENST00000535906 NSD2O96028 1365 aa17.59■□□□□ 0.41
VPS33B-202ENST00000535906 ESF1Q9H501 851 aaKnown RBP17.58■□□□□ 0.4
VPS33B-202ENST00000535906 ATAD2Q6PL18 1390 aa17.58■□□□□ 0.4
VPS33B-202ENST00000535906 ABCC11Q96J66 1382 aa17.57■□□□□ 0.4
VPS33B-202ENST00000535906 SETD1AO15047 1707 aaKnown RBP17.56■□□□□ 0.4
VPS33B-202ENST00000535906 CDK19Q9BWU1 502 aa17.56■□□□□ 0.4
VPS33B-202ENST00000535906 DMRT2Q9Y5R5 561 aa17.56■□□□□ 0.4
VPS33B-202ENST00000535906 CD163L1Q9NR16 1453 aa17.56■□□□□ 0.4
VPS33B-202ENST00000535906 WAPLQ7Z5K2 1190 aa17.55■□□□□ 0.4
VPS33B-202ENST00000535906 C20orf194Q5TEA3 1177 aa17.55■□□□□ 0.4
VPS33B-202ENST00000535906 NGEFQ8N5V2 710 aa17.55■□□□□ 0.4
VPS33B-202ENST00000535906 CRBNQ96SW2 442 aa17.55■□□□□ 0.4
VPS33B-202ENST00000535906 GGNBP2Q9H3C7 697 aa17.53■□□□□ 0.4
VPS33B-202ENST00000535906 TERF2IPQ9NYB0 399 aa17.53■□□□□ 0.4
VPS33B-202ENST00000535906 CFAP53Q96M91 514 aa17.53■□□□□ 0.4
VPS33B-202ENST00000535906 NRXN3Q9Y4C0 1643 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 E9PSI1 815 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 WWC1Q8IX03 1113 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 RUNDC1Q96C34 613 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 DLC1Q96QB1 1528 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 FYB1O15117 783 aa17.52■□□□□ 0.4
VPS33B-202ENST00000535906 NKTRP30414 1462 aaKnown RBP17.52■□□□□ 0.39
VPS33B-202ENST00000535906 CABP1Q9NZU7 370 aa17.51■□□□□ 0.39
VPS33B-202ENST00000535906 NEUROD2Q15784 382 aa17.5■□□□□ 0.39
VPS33B-202ENST00000535906 ERICH6Q7L0X2 663 aa17.5■□□□□ 0.39
VPS33B-202ENST00000535906 TCP11L2Q8N4U5 519 aa17.5■□□□□ 0.39
VPS33B-202ENST00000535906 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.5■□□□□ 0.39
VPS33B-202ENST00000535906 RRP7AQ9Y3A4 280 aaKnown RBP17.5■□□□□ 0.39
VPS33B-202ENST00000535906 METP08581 1390 aa17.5■□□□□ 0.39
VPS33B-202ENST00000535906 NLRP1Q9C000 1473 aa17.5■□□□□ 0.39
VPS33B-202ENST00000535906 IQSEC2Q5JU85 1478 aa17.49■□□□□ 0.39
VPS33B-202ENST00000535906 TNRQ92752 1358 aa17.49■□□□□ 0.39
VPS33B-202ENST00000535906 HDGFL2Q7Z4V5 671 aaPredicted RBP17.48■□□□□ 0.39
VPS33B-202ENST00000535906 ANKRD26Q9UPS8 1709 aa17.47■□□□□ 0.39
VPS33B-202ENST00000535906 U2AF1L5P0DN76 240 aaPredicted RBP17.47■□□□□ 0.39
VPS33B-202ENST00000535906 U2AF1Q01081 240 aaKnown RBP eCLIP17.47■□□□□ 0.39
VPS33B-202ENST00000535906 PHF23Q9BUL5 403 aaPredicted RBP17.47■□□□□ 0.39
VPS33B-202ENST00000535906 MED14O60244 1454 aa17.47■□□□□ 0.39
VPS33B-202ENST00000535906 BCAR3O75815 825 aa17.46■□□□□ 0.38
VPS33B-202ENST00000535906 TXNDC2Q86VQ3 553 aa17.46■□□□□ 0.38
VPS33B-202ENST00000535906 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.46■□□□□ 0.38
VPS33B-202ENST00000535906 HDGFP51858 240 aaKnown RBP17.44■□□□□ 0.38
VPS33B-202ENST00000535906 UBR1Q8IWV7 1749 aa17.44■□□□□ 0.38
VPS33B-202ENST00000535906 TMEM2Q9UHN6 1383 aa17.43■□□□□ 0.38
VPS33B-202ENST00000535906 COL3A1P02461 1466 aaPredicted RBP17.43■□□□□ 0.38
VPS33B-202ENST00000535906 WASLO00401 505 aaPredicted RBP17.42■□□□□ 0.38
VPS33B-202ENST00000535906 CCDC27Q2M243 656 aa17.42■□□□□ 0.38
VPS33B-202ENST00000535906 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.42■□□□□ 0.38
VPS33B-202ENST00000535906 KIF20BQ96Q89 1820 aa17.42■□□□□ 0.38
VPS33B-202ENST00000535906 ATP7BP35670 1465 aa17.42■□□□□ 0.38
VPS33B-202ENST00000535906 TCERG1O14776 1098 aaKnown RBP17.41■□□□□ 0.38
VPS33B-202ENST00000535906 WDR63Q8IWG1 891 aa17.41■□□□□ 0.38
VPS33B-202ENST00000535906 U2SURPO15042 1029 aaKnown RBP17.41■□□□□ 0.38
VPS33B-202ENST00000535906 CEBPAP49715 358 aaPredicted RBP17.4■□□□□ 0.38
VPS33B-202ENST00000535906 TECPR2O15040 1411 aa17.4■□□□□ 0.38
VPS33B-202ENST00000535906 PLEKHF1Q96S99 279 aa17.39■□□□□ 0.37
VPS33B-202ENST00000535906 FAM135BQ49AJ0 1406 aa17.39■□□□□ 0.37
VPS33B-202ENST00000535906 ADGRB2O60241 1585 aa17.39■□□□□ 0.37
VPS33B-202ENST00000535906 KNDC1Q76NI1 1749 aa17.39■□□□□ 0.37
VPS33B-202ENST00000535906 ANP32AP39687 249 aaKnown RBP17.39■□□□□ 0.37
VPS33B-202ENST00000535906 SIRT1Q96EB6 747 aa17.39■□□□□ 0.37
VPS33B-202ENST00000535906 NOP58Q9Y2X3 529 aaKnown RBP17.39■□□□□ 0.37
VPS33B-202ENST00000535906 PPIP5K1Q6PFW1 1433 aa17.38■□□□□ 0.37
VPS33B-202ENST00000535906 FBLN1P23142 703 aa17.38■□□□□ 0.37
VPS33B-202ENST00000535906 PNPLA6Q8IY17 1366 aa17.38■□□□□ 0.37
VPS33B-202ENST00000535906 CPSF1Q10570 1443 aaKnown RBP17.38■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms