RNA–Protein interactions for RNA: ENST00000533464.5

PHRF1-205, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-205ENST00000533464 H3BQV1 296 aa21.52■■□□□ 1.04
PHRF1-205ENST00000533464 IFFO2Q5TF58 517 aa21.52■■□□□ 1.04
PHRF1-205ENST00000533464 ATP6V1DQ9Y5K8 247 aa21.52■■□□□ 1.04
PHRF1-205ENST00000533464 TSR2Q969E8 191 aaKnown RBP21.52■■□□□ 1.03
PHRF1-205ENST00000533464 TPM4P67936 248 aa21.51■■□□□ 1.03
PHRF1-205ENST00000533464 CDK19Q9BWU1 502 aa21.51■■□□□ 1.03
PHRF1-205ENST00000533464 INTS3Q68E01 1043 aaKnown RBP21.51■■□□□ 1.03
PHRF1-205ENST00000533464 FAM184AQ8NB25 1140 aa21.51■■□□□ 1.03
PHRF1-205ENST00000533464 G3BP1Q13283 466 aaKnown RBP eCLIP21.51■■□□□ 1.037e-7■■■■□ 25.3
PHRF1-205ENST00000533464 PDE3AQ14432 1141 aa21.51■■□□□ 1.03
PHRF1-205ENST00000533464 ANKRD30BQ9BXX2 1392 aa21.5■■□□□ 1.03
PHRF1-205ENST00000533464 IQGAP2Q13576 1575 aa21.5■■□□□ 1.03
PHRF1-205ENST00000533464 C11orf95C9JLR9 678 aaPredicted RBP21.5■■□□□ 1.03
PHRF1-205ENST00000533464 ARHGEF11O15085 1522 aa21.49■■□□□ 1.03
PHRF1-205ENST00000533464 NLRP2Q9NX02 1062 aa21.49■■□□□ 1.03
PHRF1-205ENST00000533464 ABTB2Q8N961 1025 aa21.48■■□□□ 1.03
PHRF1-205ENST00000533464 ABCC5O15440 1437 aa21.47■■□□□ 1.03
PHRF1-205ENST00000533464 PLB1Q6P1J6 1458 aa21.47■■□□□ 1.03
PHRF1-205ENST00000533464 TWISTNBQ3B726 338 aaPredicted RBP21.47■■□□□ 1.03
PHRF1-205ENST00000533464 HSP90AB4PQ58FF6 505 aa21.46■■□□□ 1.03
PHRF1-205ENST00000533464 ATF3P18847 181 aa21.46■■□□□ 1.03
PHRF1-205ENST00000533464 UBTFL1P0CB47 393 aaPredicted RBP21.46■■□□□ 1.03
PHRF1-205ENST00000533464 AIMP1Q12904 312 aaKnown RBP21.46■■□□□ 1.03
PHRF1-205ENST00000533464 PDZRN3Q9UPQ7 1066 aa21.46■■□□□ 1.03
PHRF1-205ENST00000533464 MAGI1Q96QZ7 1491 aaPredicted RBP21.46■■□□□ 1.03
PHRF1-205ENST00000533464 RASSF8Q8NHQ8 419 aa21.46■■□□□ 1.03
PHRF1-205ENST00000533464 SYTL4Q96C24 671 aaPredicted RBP21.45■■□□□ 1.02
PHRF1-205ENST00000533464 LRRFIP1Q32MZ4 808 aaKnown RBP21.45■■□□□ 1.02
PHRF1-205ENST00000533464 GAS2L2Q8NHY3 880 aa21.45■■□□□ 1.02
PHRF1-205ENST00000533464 SMG6Q86US8 1419 aaKnown RBP21.44■■□□□ 1.02
PHRF1-205ENST00000533464 CLSTN1O94985 981 aa21.44■■□□□ 1.02
PHRF1-205ENST00000533464 MAP3K1Q13233 1512 aa21.44■■□□□ 1.02
PHRF1-205ENST00000533464 CDC45O75419 566 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 SULT6B1Q6IMI4 303 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 NOB1Q9ULX3 412 aaKnown RBP21.43■■□□□ 1.02
PHRF1-205ENST00000533464 RPGRIP1LQ68CZ1 1315 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 RIC3Q7Z5B4 369 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 ARID3AQ99856 593 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 CHMP4CQ96CF2 233 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.43■■□□□ 1.02
PHRF1-205ENST00000533464 CCDC141Q6ZP82 1450 aa21.43■■□□□ 1.02
PHRF1-205ENST00000533464 G3V3G9 751 aa21.42■■□□□ 1.02
PHRF1-205ENST00000533464 DCAF8Q5TAQ9 597 aa21.42■■□□□ 1.02
PHRF1-205ENST00000533464 MCTP1Q6DN14 999 aa21.42■■□□□ 1.02
PHRF1-205ENST00000533464 WDR63Q8IWG1 891 aa21.42■■□□□ 1.02
PHRF1-205ENST00000533464 C1orf115Q9H7X2 142 aa21.42■■□□□ 1.02
PHRF1-205ENST00000533464 CAMSAP2Q08AD1 1489 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 NFKBIBQ15653 356 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 LAMC3Q9Y6N6 1575 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 ERC2O15083 957 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 ESCO1Q5FWF5 840 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 RNF20Q5VTR2 975 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 CCDC30Q5VVM6 783 aa21.41■■□□□ 1.02
PHRF1-205ENST00000533464 ZNF692Q9BU19 519 aaPredicted RBP21.41■■□□□ 1.02
PHRF1-205ENST00000533464 GNAI3P08754 354 aa21.4■■□□□ 1.02
PHRF1-205ENST00000533464 PTPN23Q9H3S7 1636 aa21.39■■□□□ 1.02
PHRF1-205ENST00000533464 GPRASP1Q5JY77 1395 aa21.39■■□□□ 1.01
PHRF1-205ENST00000533464 CREBRFQ8IUR6 639 aa21.39■■□□□ 1.01
PHRF1-205ENST00000533464 NUCB2P80303 420 aa21.38■■□□□ 1.01
PHRF1-205ENST00000533464 CUL7Q14999 1698 aa21.38■■□□□ 1.01
PHRF1-205ENST00000533464 APPP05067 770 aa21.38■■□□□ 1.01
PHRF1-205ENST00000533464 CPLX2Q6PUV4 134 aaKnown RBP21.38■■□□□ 1.01
PHRF1-205ENST00000533464 SURF6O75683 361 aaKnown RBP21.37■■□□□ 1.01
PHRF1-205ENST00000533464 SLC26A8Q96RN1 970 aa21.37■■□□□ 1.01
PHRF1-205ENST00000533464 NCOA1Q15788 1441 aa21.37■■□□□ 1.01
PHRF1-205ENST00000533464 RTEL1-TNFRSF6BF6WH68 1400 aa21.37■■□□□ 1.01
PHRF1-205ENST00000533464 THEMISQ8N1K5 641 aaPredicted RBP21.36■■□□□ 1.01
PHRF1-205ENST00000533464 SLC4A2P04920 1241 aa21.36■■□□□ 1.01
PHRF1-205ENST00000533464 ATF7IPQ6VMQ6 1270 aa21.36■■□□□ 1.01
PHRF1-205ENST00000533464 SYNE3Q6ZMZ3 975 aa21.36■■□□□ 1.01
PHRF1-205ENST00000533464 AKAP17AQ02040 695 aaKnown RBP21.35■■□□□ 1.01
PHRF1-205ENST00000533464 SMC3Q9UQE7 1217 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 VPS37CA5D8V6 355 aaPredicted RBP21.35■■□□□ 1.01
PHRF1-205ENST00000533464 NEUROD6Q96NK8 337 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 ATAD2Q6PL18 1390 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 GRIN2AQ12879 1464 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 BECN2A8MW95 431 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 CT47B1P0C2W7 299 aaPredicted RBP21.35■■□□□ 1.01
PHRF1-205ENST00000533464 BACH2Q9BYV9 841 aa21.35■■□□□ 1.01
PHRF1-205ENST00000533464 CPLX1O14810 134 aa21.34■■□□□ 1.01
PHRF1-205ENST00000533464 GOLGA6L19H0YKK7 550 aa21.34■■□□□ 1.01
PHRF1-205ENST00000533464 PLEKHO1Q53GL0 409 aaPredicted RBP21.34■■□□□ 1.01
PHRF1-205ENST00000533464 CLASRPQ8N2M8 674 aaKnown RBP21.34■■□□□ 1.01
PHRF1-205ENST00000533464 GCC1Q96CN9 775 aa21.34■■□□□ 1.01
PHRF1-205ENST00000533464 WWC1Q8IX03 1113 aa21.34■■□□□ 1.01
PHRF1-205ENST00000533464 PEG3Q9GZU2 1588 aa21.34■■□□□ 1.01
PHRF1-205ENST00000533464 NSD3Q9BZ95 1437 aa21.33■■□□□ 1.01
PHRF1-205ENST00000533464 RRS1Q15050 365 aaKnown RBP21.33■■□□□ 1.01
PHRF1-205ENST00000533464 SLFN5Q08AF3 891 aa21.33■■□□□ 1
PHRF1-205ENST00000533464 PROSER2Q86WR7 435 aaPredicted RBP21.32■■□□□ 1
PHRF1-205ENST00000533464 MVPQ14764 893 aaKnown RBP21.32■■□□□ 1
PHRF1-205ENST00000533464 URB2Q14146 1524 aaKnown RBP21.32■■□□□ 1
PHRF1-205ENST00000533464 TRDNQ13061 729 aa21.32■■□□□ 1
PHRF1-205ENST00000533464 AMER1Q5JTC6 1135 aaPredicted RBP21.31■■□□□ 1
PHRF1-205ENST00000533464 HDGFL1Q5TGJ6 251 aa21.31■■□□□ 1
PHRF1-205ENST00000533464 FCHSD2O94868 740 aa21.3■■□□□ 1
PHRF1-205ENST00000533464 GNAI2P04899 355 aa21.3■■□□□ 1
PHRF1-205ENST00000533464 MARCH6O60337 910 aa21.29■■□□□ 1
PHRF1-205ENST00000533464 BICD2Q8TD16 824 aa21.29■■□□□ 1
PHRF1-205ENST00000533464 CCDC61Q9Y6R9 512 aa21.28■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms