RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 FOXD1Q16676 465 aa12.23□□□□□ -0.45
NEDD8-207ENST00000533242 FNBP4Q8N3X1 1017 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-207ENST00000533242 CCER1Q8TC90 406 aaPredicted RBP12.23□□□□□ -0.45
NEDD8-207ENST00000533242 HFM1A2PYH4 1435 aa12.23□□□□□ -0.45
NEDD8-207ENST00000533242 CDC42BPGQ6DT37 1551 aa12.23□□□□□ -0.45
NEDD8-207ENST00000533242 VGFO15240 615 aaPredicted RBP12.22□□□□□ -0.45
NEDD8-207ENST00000533242 ORAI2Q96SN7 254 aa12.22□□□□□ -0.45
NEDD8-207ENST00000533242 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.22□□□□□ -0.45
NEDD8-207ENST00000533242 MYOM2P54296 1465 aa12.22□□□□□ -0.45
NEDD8-207ENST00000533242 RPGRIP1LQ68CZ1 1315 aa12.21□□□□□ -0.45
NEDD8-207ENST00000533242 PXDNQ92626 1479 aa12.2□□□□□ -0.46
NEDD8-207ENST00000533242 CCDC125Q86Z20 511 aa12.19□□□□□ -0.46
NEDD8-207ENST00000533242 ZRANB1Q9UGI0 708 aa12.19□□□□□ -0.46
NEDD8-207ENST00000533242 NPHP3Q7Z494 1330 aa12.18□□□□□ -0.46
NEDD8-207ENST00000533242 BCL9LQ86UU0 1499 aa12.18□□□□□ -0.46
NEDD8-207ENST00000533242 NAIPQ13075 1403 aa12.18□□□□□ -0.46
NEDD8-207ENST00000533242 KNDC1Q76NI1 1749 aa12.18□□□□□ -0.46
NEDD8-207ENST00000533242 KIF1AQ12756 1690 aa12.16□□□□□ -0.46
NEDD8-207ENST00000533242 FMN2Q9NZ56 1722 aa12.16□□□□□ -0.46
NEDD8-207ENST00000533242 LRPPRCP42704 1394 aaKnown RBP12.16□□□□□ -0.46
NEDD8-207ENST00000533242 IFT172Q9UG01 1749 aa12.16□□□□□ -0.46
NEDD8-207ENST00000533242 ESCO1Q5FWF5 840 aa12.15□□□□□ -0.46
NEDD8-207ENST00000533242 RRBP1Q9P2E9 1410 aaKnown RBP12.15□□□□□ -0.46
NEDD8-207ENST00000533242 BRWD3Q6RI45 1802 aa12.15□□□□□ -0.46
NEDD8-207ENST00000533242 GJD4Q96KN9 370 aaPredicted RBP12.15□□□□□ -0.46
NEDD8-207ENST00000533242 GLI3P10071 1580 aa12.15□□□□□ -0.47
NEDD8-207ENST00000533242 TECPR2O15040 1411 aa12.14□□□□□ -0.47
NEDD8-207ENST00000533242 SLIT2O94813 1529 aa12.13□□□□□ -0.47
NEDD8-207ENST00000533242 USP32Q8NFA0 1604 aa12.13□□□□□ -0.47
NEDD8-207ENST00000533242 RALGAPBQ86X10 1494 aa12.12□□□□□ -0.47
NEDD8-207ENST00000533242 FOXO3O43524 673 aa12.12□□□□□ -0.47
NEDD8-207ENST00000533242 BLMP54132 1417 aaPredicted RBP12.12□□□□□ -0.47
NEDD8-207ENST00000533242 NWD2Q9ULI1 1742 aa12.12□□□□□ -0.47
NEDD8-207ENST00000533242 XPCQ01831 940 aaPredicted RBP12.11□□□□□ -0.47
NEDD8-207ENST00000533242 UNC5CLQ8IV45 518 aa12.11□□□□□ -0.47
NEDD8-207ENST00000533242 PLCH1Q4KWH8 1693 aa12.11□□□□□ -0.47
NEDD8-207ENST00000533242 CCDC144AA2RUR9 1427 aa12.1□□□□□ -0.47
NEDD8-207ENST00000533242 RGPD8O14715 1765 aaPredicted RBP12.1□□□□□ -0.47
NEDD8-207ENST00000533242 SPATA31A3Q5VYP0 1347 aa12.1□□□□□ -0.47
NEDD8-207ENST00000533242 ABCA3Q99758 1704 aa12.1□□□□□ -0.47
NEDD8-207ENST00000533242 SLC4A1APQ9BWU0 796 aaKnown RBP12.1□□□□□ -0.47
NEDD8-207ENST00000533242 ABCC11Q96J66 1382 aa12.1□□□□□ -0.47
NEDD8-207ENST00000533242 LRP5O75197 1615 aa12.1□□□□□ -0.47
NEDD8-207ENST00000533242 ADGRF5Q8IZF2 1346 aa12.09□□□□□ -0.47
NEDD8-207ENST00000533242 ANKRD30BQ9BXX2 1392 aa12.09□□□□□ -0.47
NEDD8-207ENST00000533242 WAPLQ7Z5K2 1190 aa12.08□□□□□ -0.48
NEDD8-207ENST00000533242 STK26Q9P289 416 aa12.08□□□□□ -0.48
NEDD8-207ENST00000533242 SPATA31E1Q6ZUB1 1445 aa12.08□□□□□ -0.48
NEDD8-207ENST00000533242 PLEKHH1Q9ULM0 1364 aa12.07□□□□□ -0.48
NEDD8-207ENST00000533242 TNS3Q68CZ2 1445 aa12.07□□□□□ -0.48
NEDD8-207ENST00000533242 KRT28Q7Z3Y7 464 aa12.06□□□□□ -0.48
NEDD8-207ENST00000533242 PIK3C2GO75747 1445 aa12.06□□□□□ -0.48
NEDD8-207ENST00000533242 NUTM2FA1L443 756 aa12.06□□□□□ -0.48
NEDD8-207ENST00000533242 SIRT1Q96EB6 747 aa12.06□□□□□ -0.48
NEDD8-207ENST00000533242 YTHDC2Q9H6S0 1430 aaKnown RBP12.06□□□□□ -0.48
NEDD8-207ENST00000533242 SF3B2Q13435 895 aaKnown RBP12.05□□□□□ -0.48
NEDD8-207ENST00000533242 VPS72Q15906 364 aa12.05□□□□□ -0.48
NEDD8-207ENST00000533242 SEPT12Q8IYM1 358 aa12.05□□□□□ -0.48
NEDD8-207ENST00000533242 NRAPQ86VF7 1730 aa12.05□□□□□ -0.48
NEDD8-207ENST00000533242 PSME1Q06323 249 aa12.04□□□□□ -0.48
NEDD8-207ENST00000533242 SBNO1A3KN83 1393 aa12.04□□□□□ -0.48
NEDD8-207ENST00000533242 ONECUT3O60422 494 aaPredicted RBP12.04□□□□□ -0.48
NEDD8-207ENST00000533242 DEFB132Q7Z7B7 95 aa12.04□□□□□ -0.48
NEDD8-207ENST00000533242 NRXN1Q9ULB1 1477 aa12.04□□□□□ -0.48
NEDD8-207ENST00000533242 TMEM132EQ6IEE7 984 aa12.03□□□□□ -0.48
NEDD8-207ENST00000533242 PHF8Q9UPP1 1060 aa12.03□□□□□ -0.48
NEDD8-207ENST00000533242 HAP1P54257 671 aaPredicted RBP12.03□□□□□ -0.48
NEDD8-207ENST00000533242 RGL3Q3MIN7 710 aa12.03□□□□□ -0.48
NEDD8-207ENST00000533242 RGPD1P0DJD0 1748 aa12.02□□□□□ -0.48
NEDD8-207ENST00000533242 ARHGEF10O15013 1369 aa12.02□□□□□ -0.49
NEDD8-207ENST00000533242 TRPM3Q9HCF6 1732 aaPredicted RBP12.02□□□□□ -0.49
NEDD8-207ENST00000533242 KRT27Q7Z3Y8 459 aa12.02□□□□□ -0.49
NEDD8-207ENST00000533242 COL14A1Q05707 1796 aaKnown RBP12.01□□□□□ -0.49
NEDD8-207ENST00000533242 ADGRB2O60241 1585 aa12□□□□□ -0.49
NEDD8-207ENST00000533242 CABLES1Q8TDN4 633 aa12□□□□□ -0.49
NEDD8-207ENST00000533242 C14orf93Q9H972 538 aaKnown RBP12□□□□□ -0.49
NEDD8-207ENST00000533242 CCDC9Q9Y3X0 531 aaKnown RBP12□□□□□ -0.49
NEDD8-207ENST00000533242 DLC1Q96QB1 1528 aa12□□□□□ -0.49
NEDD8-207ENST00000533242 ALS2Q96Q42 1657 aa12□□□□□ -0.49
NEDD8-207ENST00000533242 ANKARQ7Z5J8 1434 aa12□□□□□ -0.49
NEDD8-207ENST00000533242 DHX57Q6P158 1386 aaKnown RBP12□□□□□ -0.49
NEDD8-207ENST00000533242 BAG6P46379 1132 aa11.98□□□□□ -0.49
NEDD8-207ENST00000533242 MPHOSPH9Q99550 1183 aa11.98□□□□□ -0.49
NEDD8-207ENST00000533242 CRYBG1Q9Y4K1 1723 aa11.98□□□□□ -0.49
NEDD8-207ENST00000533242 FAM83GA6ND36 823 aa11.97□□□□□ -0.49
NEDD8-207ENST00000533242 TNS1Q9HBL0 1735 aaKnown RBP11.97□□□□□ -0.49
NEDD8-207ENST00000533242 LMOD2Q6P5Q4 547 aa11.97□□□□□ -0.49
NEDD8-207ENST00000533242 THSD7AQ9UPZ6 1657 aa11.96□□□□□ -0.49
NEDD8-207ENST00000533242 PLEKHG5O94827 1062 aa11.95□□□□□ -0.5
NEDD8-207ENST00000533242 CFAP70Q5T0N1 1121 aa11.95□□□□□ -0.5
NEDD8-207ENST00000533242 PRAM1Q96QH2 718 aa11.95□□□□□ -0.5
NEDD8-207ENST00000533242 A0A0G2JS52 829 aa11.94□□□□□ -0.5
NEDD8-207ENST00000533242 PSDA5PKW4 1024 aaPredicted RBP11.94□□□□□ -0.5
NEDD8-207ENST00000533242 MYT1Q01538 1121 aa11.94□□□□□ -0.5
NEDD8-207ENST00000533242 EP400Q96L91 3159 aa11.94□□□□□ -0.5
NEDD8-207ENST00000533242 EIF3AQ14152 1382 aaKnown RBP11.94□□□□□ -0.5
NEDD8-207ENST00000533242 FAM98CQ17RN3 349 aaKnown RBP11.94□□□□□ -0.5
NEDD8-207ENST00000533242 DIEXFQ68CQ4 756 aaKnown RBP11.94□□□□□ -0.5
NEDD8-207ENST00000533242 DISP2A7MBM2 1401 aa11.94□□□□□ -0.5
NEDD8-207ENST00000533242 ACIN1Q9UKV3 1341 aaKnown RBP11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.3 ms