RNA–Protein interactions for RNA: ENST00000520497.1

VAPB-206, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 937 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-206ENST00000520497 ABCC11Q96J66 1382 aa11.92□□□□□ -0.5
VAPB-206ENST00000520497 KIF7Q2M1P5 1343 aa11.92□□□□□ -0.5
VAPB-206ENST00000520497 DIEXFQ68CQ4 756 aaKnown RBP11.92□□□□□ -0.5
VAPB-206ENST00000520497 ANKLE2Q86XL3 938 aa11.92□□□□□ -0.5
VAPB-206ENST00000520497 TULP4Q9NRJ4 1543 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 CENPJQ9HC77 1338 aaPredicted RBP11.91□□□□□ -0.5
VAPB-206ENST00000520497 TRAK1Q9UPV9 953 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 TBX22Q9Y458 520 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 NPHP4O75161 1426 aaPredicted RBP11.91□□□□□ -0.5
VAPB-206ENST00000520497 PTPRUQ92729 1446 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 NWD1Q149M9 1564 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.91□□□□□ -0.5
VAPB-206ENST00000520497 PIK3R4Q99570 1358 aa11.91□□□□□ -0.5
VAPB-206ENST00000520497 STRCP1A6NGW2 1772 aa11.9□□□□□ -0.5
VAPB-206ENST00000520497 ADGRB2O60241 1585 aa11.9□□□□□ -0.5
VAPB-206ENST00000520497 PIP4K2BP78356 416 aa11.9□□□□□ -0.5
VAPB-206ENST00000520497 FAM135BQ49AJ0 1406 aa11.9□□□□□ -0.5
VAPB-206ENST00000520497 PTCH1Q13635 1447 aa11.89□□□□□ -0.51
VAPB-206ENST00000520497 SLC24A1O60721 1099 aa11.88□□□□□ -0.51
VAPB-206ENST00000520497 HSPA1LP34931 641 aa11.88□□□□□ -0.51
VAPB-206ENST00000520497 SLC26A8Q96RN1 970 aa11.88□□□□□ -0.51
VAPB-206ENST00000520497 TMF1P82094 1093 aa11.87□□□□□ -0.51
VAPB-206ENST00000520497 SIRT1Q96EB6 747 aa11.87□□□□□ -0.51
VAPB-206ENST00000520497 BCANQ96GW7 911 aa11.87□□□□□ -0.51
VAPB-206ENST00000520497 STK26Q9P289 416 aa11.87□□□□□ -0.51
VAPB-206ENST00000520497 NALCNQ8IZF0 1738 aa11.86□□□□□ -0.51
VAPB-206ENST00000520497 DDX10Q13206 875 aaKnown RBP11.86□□□□□ -0.51
VAPB-206ENST00000520497 RGPD8O14715 1765 aaPredicted RBP11.85□□□□□ -0.51
VAPB-206ENST00000520497 TOPAZ1Q8N9V7 1692 aa11.85□□□□□ -0.51
VAPB-206ENST00000520497 ROBO2Q9HCK4 1378 aa11.85□□□□□ -0.51
VAPB-206ENST00000520497 PLEKHH1Q9ULM0 1364 aa11.85□□□□□ -0.51
VAPB-206ENST00000520497 PRAM1Q96QH2 718 aa11.85□□□□□ -0.51
VAPB-206ENST00000520497 XIRP1Q702N8 1843 aaKnown RBP11.85□□□□□ -0.51
VAPB-206ENST00000520497 ITSN1Q15811 1721 aa11.84□□□□□ -0.51
VAPB-206ENST00000520497 LRRC7Q96NW7 1537 aa11.84□□□□□ -0.51
VAPB-206ENST00000520497 CDCA8Q53HL2 280 aa11.83□□□□□ -0.52
VAPB-206ENST00000520497 FMN2Q9NZ56 1722 aa11.83□□□□□ -0.52
VAPB-206ENST00000520497 AKAP12Q02952 1782 aa11.82□□□□□ -0.52
VAPB-206ENST00000520497 WAPLQ7Z5K2 1190 aa11.82□□□□□ -0.52
VAPB-206ENST00000520497 PUS7Q96PZ0 661 aaKnown RBP11.82□□□□□ -0.52
VAPB-206ENST00000520497 POGKQ9P215 609 aa11.82□□□□□ -0.52
VAPB-206ENST00000520497 AMOTL2Q9Y2J4 779 aa11.82□□□□□ -0.52
VAPB-206ENST00000520497 NKTRP30414 1462 aaKnown RBP11.82□□□□□ -0.52
VAPB-206ENST00000520497 USP32Q8NFA0 1604 aa11.82□□□□□ -0.52
VAPB-206ENST00000520497 EVC2Q86UK5 1308 aa11.81□□□□□ -0.52
VAPB-206ENST00000520497 CDC42BPGQ6DT37 1551 aa11.8□□□□□ -0.52
VAPB-206ENST00000520497 SOCS7O14512 581 aa11.8□□□□□ -0.52
VAPB-206ENST00000520497 SAFB2Q14151 953 aaKnown RBP eCLIP11.8□□□□□ -0.52
VAPB-206ENST00000520497 RBM33Q96EV2 1170 aaKnown RBP11.8□□□□□ -0.52
VAPB-206ENST00000520497 MINK1Q8N4C8 1332 aaPredicted RBP11.8□□□□□ -0.52
VAPB-206ENST00000520497 TOM1O60784 492 aa11.79□□□□□ -0.52
VAPB-206ENST00000520497 KCNA6P17658 529 aa11.79□□□□□ -0.52
VAPB-206ENST00000520497 MON2Q7Z3U7 1717 aa11.79□□□□□ -0.52
VAPB-206ENST00000520497 ATP7BP35670 1465 aa11.78□□□□□ -0.52
VAPB-206ENST00000520497 ANKRD26Q9UPS8 1709 aa11.78□□□□□ -0.52
VAPB-206ENST00000520497 POLR3GLQ9BT43 218 aa11.78□□□□□ -0.52
VAPB-206ENST00000520497 NINLQ9Y2I6 1382 aa11.78□□□□□ -0.52
VAPB-206ENST00000520497 KIF20BQ96Q89 1820 aa11.77□□□□□ -0.52
VAPB-206ENST00000520497 MED1Q15648 1581 aaPredicted RBP11.77□□□□□ -0.53
VAPB-206ENST00000520497 ATAD2Q6PL18 1390 aa11.77□□□□□ -0.53
VAPB-206ENST00000520497 NPM3O75607 178 aaKnown RBP11.76□□□□□ -0.53
VAPB-206ENST00000520497 C1QBPQ07021 282 aaKnown RBP11.76□□□□□ -0.53
VAPB-206ENST00000520497 ADGRL3Q9HAR2 1447 aa11.76□□□□□ -0.53
VAPB-206ENST00000520497 WASLO00401 505 aaPredicted RBP11.75□□□□□ -0.53
VAPB-206ENST00000520497 CDK19Q9BWU1 502 aa11.75□□□□□ -0.53
VAPB-206ENST00000520497 CD163L1Q9NR16 1453 aa11.75□□□□□ -0.53
VAPB-206ENST00000520497 NRKQ7Z2Y5 1582 aa11.75□□□□□ -0.53
VAPB-206ENST00000520497 PER1O15534 1290 aaPredicted RBP11.74□□□□□ -0.53
VAPB-206ENST00000520497 CABP2Q9NPB3 220 aa11.74□□□□□ -0.53
VAPB-206ENST00000520497 SRPK2P78362 688 aaKnown RBP11.73□□□□□ -0.53
VAPB-206ENST00000520497 MIER1Q8N108 512 aa11.73□□□□□ -0.53
VAPB-206ENST00000520497 ANKARQ7Z5J8 1434 aa11.72□□□□□ -0.53
VAPB-206ENST00000520497 NCOA3Q9Y6Q9 1424 aa11.72□□□□□ -0.53
VAPB-206ENST00000520497 TMEM94Q12767 1356 aa11.72□□□□□ -0.53
VAPB-206ENST00000520497 ANKRD36BQ8N2N9 1353 aa11.72□□□□□ -0.53
VAPB-206ENST00000520497 PANK3Q9H999 370 aa11.72□□□□□ -0.53
VAPB-206ENST00000520497 PRR36Q9H6K5 1346 aa11.71□□□□□ -0.53
VAPB-206ENST00000520497 SLC12A5Q9H2X9 1139 aa11.71□□□□□ -0.53
VAPB-206ENST00000520497 PPIP5K1Q6PFW1 1433 aa11.7□□□□□ -0.54
VAPB-206ENST00000520497 A0A1W2PP64 1363 aa11.7□□□□□ -0.54
VAPB-206ENST00000520497 NPC1L1Q9UHC9 1359 aa11.7□□□□□ -0.54
VAPB-206ENST00000520497 ANP32CO43423 234 aa11.7□□□□□ -0.54
VAPB-206ENST00000520497 DCCP43146 1447 aa11.69□□□□□ -0.54
VAPB-206ENST00000520497 CPSF1Q10570 1443 aaKnown RBP11.69□□□□□ -0.54
VAPB-206ENST00000520497 KIF1AQ12756 1690 aa11.69□□□□□ -0.54
VAPB-206ENST00000520497 NUDT16Q96DE0 195 aaKnown RBP11.69□□□□□ -0.54
VAPB-206ENST00000520497 PRKRIP1Q9H875 184 aaPredicted RBP11.69□□□□□ -0.54
VAPB-206ENST00000520497 NSD3Q9BZ95 1437 aa11.69□□□□□ -0.54
VAPB-206ENST00000520497 KTN1Q86UP2 1357 aaKnown RBP11.68□□□□□ -0.54
VAPB-206ENST00000520497 PARD3Q8TEW0 1356 aa11.68□□□□□ -0.54
VAPB-206ENST00000520497 PROSER2Q86WR7 435 aaPredicted RBP11.68□□□□□ -0.54
VAPB-206ENST00000520497 TMC1Q8TDI8 760 aa11.68□□□□□ -0.54
VAPB-206ENST00000520497 CARD14Q9BXL6 1004 aa11.68□□□□□ -0.54
VAPB-206ENST00000520497 USP54Q70EL1 1684 aa11.68□□□□□ -0.54
VAPB-206ENST00000520497 AMER1Q5JTC6 1135 aaPredicted RBP11.67□□□□□ -0.54
VAPB-206ENST00000520497 RGS17Q9UGC6 210 aaPredicted RBP11.67□□□□□ -0.54
VAPB-206ENST00000520497 CCDC61Q9Y6R9 512 aa11.67□□□□□ -0.54
VAPB-206ENST00000520497 MAP2P11137 1827 aaKnown RBP11.67□□□□□ -0.54
VAPB-206ENST00000520497 MARF1Q9Y4F3 1742 aaKnown RBP11.66□□□□□ -0.54
VAPB-206ENST00000520497 CABP1Q9NZU7 370 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms