RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 OTUD5Q96G74 571 aa13.32□□□□□ -0.28
LSM1-202ENST00000520286 VPS9D1Q9Y2B5 631 aa13.32□□□□□ -0.28
LSM1-202ENST00000520286 CFAP99D6REC4 459 aa13.31□□□□□ -0.28
LSM1-202ENST00000520286 TRIM34Q9BYJ4 488 aa13.31□□□□□ -0.28
LSM1-202ENST00000520286 PBX2P40425 430 aa13.3□□□□□ -0.28
LSM1-202ENST00000520286 LAPTM4BQ86VI4 370 aa13.3□□□□□ -0.28
LSM1-202ENST00000520286 LRRN4Q8WUT4 740 aa13.3□□□□□ -0.28
LSM1-202ENST00000520286 TRAIPQ9BWF2 469 aa13.3□□□□□ -0.28
LSM1-202ENST00000520286 RNF40O75150 1001 aa13.29□□□□□ -0.28
LSM1-202ENST00000520286 ATP6V1AP38606 617 aa13.29□□□□□ -0.28
LSM1-202ENST00000520286 WASHC4Q2M389 1173 aa13.29□□□□□ -0.28
LSM1-202ENST00000520286 NECTIN2Q92692 538 aa13.28□□□□□ -0.28
LSM1-202ENST00000520286 PPP1R15AO75807 674 aaPredicted RBP13.27□□□□□ -0.29
LSM1-202ENST00000520286 HDGFL1Q5TGJ6 251 aa13.27□□□□□ -0.29
LSM1-202ENST00000520286 NBPF3Q9H094 633 aa13.27□□□□□ -0.29
LSM1-202ENST00000520286 RETREG2Q8NC44 543 aa13.26□□□□□ -0.29
LSM1-202ENST00000520286 GPR37L1O60883 481 aa13.25□□□□□ -0.29
LSM1-202ENST00000520286 SYMPKQ92797 1274 aaKnown RBP13.25□□□□□ -0.29
LSM1-202ENST00000520286 KMT5BQ4FZB7 885 aa13.24□□□□□ -0.29
LSM1-202ENST00000520286 EMP3P54852 163 aa13.23□□□□□ -0.29
LSM1-202ENST00000520286 VAC14Q08AM6 782 aa13.23□□□□□ -0.29
LSM1-202ENST00000520286 PRR7Q8TB68 274 aa13.23□□□□□ -0.29
LSM1-202ENST00000520286 ADAMTS19Q8TE59 1207 aa13.23□□□□□ -0.29
LSM1-202ENST00000520286 ACIN1Q9UKV3 1341 aaKnown RBP13.22□□□□□ -0.29
LSM1-202ENST00000520286 BHMG1C9JSJ3 638 aaPredicted RBP13.22□□□□□ -0.29
LSM1-202ENST00000520286 ZNF687Q8N1G0 1237 aa13.22□□□□□ -0.29
LSM1-202ENST00000520286 EPS8L1Q8TE68 723 aa13.22□□□□□ -0.29
LSM1-202ENST00000520286 ZFRQ96KR1 1074 aaKnown RBP13.22□□□□□ -0.29
LSM1-202ENST00000520286 KCTD17Q8N5Z5 321 aa13.2□□□□□ -0.3
LSM1-202ENST00000520286 ST18O60284 1047 aa13.19□□□□□ -0.3
LSM1-202ENST00000520286 NR6A1Q15406 480 aa13.18□□□□□ -0.3
LSM1-202ENST00000520286 MORN1Q5T089 497 aa13.18□□□□□ -0.3
LSM1-202ENST00000520286 RETREG3Q86VR2 466 aa13.18□□□□□ -0.3
LSM1-202ENST00000520286 MARVELD3Q96A59 401 aa13.18□□□□□ -0.3
LSM1-202ENST00000520286 TK2O00142 265 aa13.17□□□□□ -0.3
LSM1-202ENST00000520286 ACTN4O43707 911 aaKnown RBP13.17□□□□□ -0.3
LSM1-202ENST00000520286 PUS10Q3MIT2 529 aaKnown RBP13.17□□□□□ -0.3
LSM1-202ENST00000520286 MRPL50Q8N5N7 158 aaKnown RBP13.17□□□□□ -0.3
LSM1-202ENST00000520286 FAM205CA6NFA0 338 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 PER1O15534 1290 aaPredicted RBP13.16□□□□□ -0.3
LSM1-202ENST00000520286 Q3C1V9 767 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 AEBP1Q8IUX7 1158 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 LRCH3Q96II8 777 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 ALG2Q9H553 416 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 SLC27A5Q9Y2P5 690 aa13.16□□□□□ -0.3
LSM1-202ENST00000520286 PBXIP1Q96AQ6 731 aa13.15□□□□□ -0.3
LSM1-202ENST00000520286 RFX1P22670 979 aa13.14□□□□□ -0.31
LSM1-202ENST00000520286 CFAP70Q5T0N1 1121 aa13.14□□□□□ -0.31
LSM1-202ENST00000520286 DESI1Q6ICB0 168 aa13.14□□□□□ -0.31
LSM1-202ENST00000520286 PPP1R12CQ9BZL4 782 aa13.14□□□□□ -0.31
LSM1-202ENST00000520286 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.14□□□□□ -0.31
LSM1-202ENST00000520286 CCDC9Q9Y3X0 531 aaKnown RBP13.13□□□□□ -0.31
LSM1-202ENST00000520286 SOX11P35716 441 aa13.12□□□□□ -0.31
LSM1-202ENST00000520286 PDE4CQ08493 712 aa13.12□□□□□ -0.31
LSM1-202ENST00000520286 PRR14Q9BWN1 585 aa13.12□□□□□ -0.31
LSM1-202ENST00000520286 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.11□□□□□ -0.31
LSM1-202ENST00000520286 PNMA1Q8ND90 353 aa13.11□□□□□ -0.31
LSM1-202ENST00000520286 PALM3A6NDB9 673 aaPredicted RBP13.09□□□□□ -0.31
LSM1-202ENST00000520286 ADGRD1Q6QNK2 874 aa13.09□□□□□ -0.31
LSM1-202ENST00000520286 LYPD8Q6UX82 237 aa13.09□□□□□ -0.31
LSM1-202ENST00000520286 SEMA3FQ13275 785 aa13.08□□□□□ -0.32
LSM1-202ENST00000520286 LHX8Q68G74 356 aa13.08□□□□□ -0.32
LSM1-202ENST00000520286 RNF19BQ6ZMZ0 732 aa13.08□□□□□ -0.32
LSM1-202ENST00000520286 BLOC1S3Q6QNY0 202 aa13.07□□□□□ -0.32
LSM1-202ENST00000520286 HS3ST6Q96QI5 342 aa13.07□□□□□ -0.32
LSM1-202ENST00000520286 LMOD1P29536 600 aaPredicted RBP13.06□□□□□ -0.32
LSM1-202ENST00000520286 SRPK2P78362 688 aaKnown RBP13.06□□□□□ -0.32
LSM1-202ENST00000520286 UCN2Q96RP3 112 aa13.06□□□□□ -0.32
LSM1-202ENST00000520286 USB1Q9BQ65 265 aaKnown RBP13.06□□□□□ -0.32
LSM1-202ENST00000520286 PPP4CP60510 307 aa13.05□□□□□ -0.32
LSM1-202ENST00000520286 LSM11P83369 360 aaKnown RBP eCLIP13.05□□□□□ -0.32
LSM1-202ENST00000520286 ANKK1Q8NFD2 765 aa13.05□□□□□ -0.32
LSM1-202ENST00000520286 TFIP11Q9UBB9 837 aaKnown RBP13.05□□□□□ -0.32
LSM1-202ENST00000520286 POTEB3A0JP26 581 aa13.04□□□□□ -0.32
LSM1-202ENST00000520286 CSB-PGBD3P0DP91 1061 aa13.04□□□□□ -0.32
LSM1-202ENST00000520286 EIF4G2P78344 907 aaKnown RBP eCLIP13.04□□□□□ -0.32
LSM1-202ENST00000520286 BRICD5Q6PL45 260 aa13.04□□□□□ -0.32
LSM1-202ENST00000520286 POTEBQ6S5H4 581 aa13.04□□□□□ -0.32
LSM1-202ENST00000520286 SALL2Q9Y467 1007 aaPredicted RBP13.04□□□□□ -0.32
LSM1-202ENST00000520286 GOLGA8CPA6NN73 597 aa13.03□□□□□ -0.32
LSM1-202ENST00000520286 HRO43593 1189 aa13.03□□□□□ -0.32
LSM1-202ENST00000520286 STAC3Q96MF2 364 aa13.03□□□□□ -0.32
LSM1-202ENST00000520286 RANGAP1P46060 587 aaPredicted RBP13.02□□□□□ -0.33
LSM1-202ENST00000520286 NR1H3Q13133 447 aa13.02□□□□□ -0.33
LSM1-202ENST00000520286 HPS5Q9UPZ3 1129 aa13.02□□□□□ -0.33
LSM1-202ENST00000520286 USTQ9Y2C2 406 aa13.02□□□□□ -0.33
LSM1-202ENST00000520286 SOWAHBA6NEL2 793 aa13.01□□□□□ -0.33
LSM1-202ENST00000520286 APLP1P51693 650 aa13.01□□□□□ -0.33
LSM1-202ENST00000520286 SCUBE3Q8IX30 993 aa13.01□□□□□ -0.33
LSM1-202ENST00000520286 FMNL1O95466 1100 aaPredicted RBP13□□□□□ -0.33
LSM1-202ENST00000520286 NPM2Q86SE8 214 aaKnown RBP13□□□□□ -0.33
LSM1-202ENST00000520286 PCDHB3Q9Y5E6 796 aa13□□□□□ -0.33
LSM1-202ENST00000520286 NR1I2O75469 434 aa12.99□□□□□ -0.33
LSM1-202ENST00000520286 BCAMP50895 628 aa12.99□□□□□ -0.33
LSM1-202ENST00000520286 FKBPLQ9UIM3 349 aa12.99□□□□□ -0.33
LSM1-202ENST00000520286 TSR3Q9UJK0 312 aaKnown RBP12.99□□□□□ -0.33
LSM1-202ENST00000520286 MAFBQ9Y5Q3 323 aaPredicted RBP12.99□□□□□ -0.33
LSM1-202ENST00000520286 ZBBXA8MT70 800 aa12.98□□□□□ -0.33
LSM1-202ENST00000520286 F12P00748 615 aaPredicted RBP12.98□□□□□ -0.33
LSM1-202ENST00000520286 FBXO45P0C2W1 286 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 100.6 ms