RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 COL17A1Q9UMD9 1497 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P23-201ENST00000518743 RFC5P40937 340 aa8.09□□□□□ -1.11
HMGB1P23-201ENST00000518743 CDCA7LQ96GN5 454 aa8.09□□□□□ -1.11
HMGB1P23-201ENST00000518743 PLSCR2Q9NRY7 297 aa8.09□□□□□ -1.11
HMGB1P23-201ENST00000518743 ADCY10Q96PN6 1610 aa8.09□□□□□ -1.11
HMGB1P23-201ENST00000518743 NUTM1Q86Y26 1132 aa8.08□□□□□ -1.12
HMGB1P23-201ENST00000518743 SHROOM2Q13796 1616 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 MED1Q15648 1581 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 PRG4Q92954 1404 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 VARS2Q5ST30 1063 aaKnown RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 RSPH4AQ5TD94 716 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 RIC3Q7Z5B4 369 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 KCTD17Q8N5Z5 321 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 PCDH10Q9P2E7 1040 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 ZNF777Q9ULD5 760 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 COG6Q9Y2V7 657 aa8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 ZNF330Q9Y3S2 320 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 CCDC9Q9Y3X0 531 aaKnown RBP8.07□□□□□ -1.12
HMGB1P23-201ENST00000518743 NUDT7P0C024 238 aa8.06□□□□□ -1.12
HMGB1P23-201ENST00000518743 PPP4R3BQ5MIZ7 849 aa8.06□□□□□ -1.12
HMGB1P23-201ENST00000518743 NBPF26B4DH59 902 aa8.05□□□□□ -1.12
HMGB1P23-201ENST00000518743 SPTLC1O15269 473 aa8.05□□□□□ -1.12
HMGB1P23-201ENST00000518743 DNAJB2P25686 324 aa8.05□□□□□ -1.12
HMGB1P23-201ENST00000518743 FAM161AQ3B820 660 aa8.05□□□□□ -1.12
HMGB1P23-201ENST00000518743 RCCD1A6NED2 376 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 PPP1R15AO75807 674 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 CD46P15529 392 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 SPIRE2Q8WWL2 714 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 TRAIPQ9BWF2 469 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 ADAM33Q9BZ11 813 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 GRIN2AQ12879 1464 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 TEX14Q8IWB6 1497 aa8.04□□□□□ -1.12
HMGB1P23-201ENST00000518743 HRCP23327 699 aa8.03□□□□□ -1.12
HMGB1P23-201ENST00000518743 PACS2Q86VP3 889 aa8.03□□□□□ -1.12
HMGB1P23-201ENST00000518743 POM121Q96HA1 1249 aa8.03□□□□□ -1.12
HMGB1P23-201ENST00000518743 PPP1R3GB7ZBB8 358 aa8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 PTPREP23469 700 aa8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 USP46P62068 366 aa8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 PRPF38BQ5VTL8 546 aaKnown RBP8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 KCNH8Q96L42 1107 aa8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 BCL2L12Q9HB09 334 aa8.02□□□□□ -1.13
HMGB1P23-201ENST00000518743 RSBN1LQ6PCB5 846 aaPredicted RBP8.01□□□□□ -1.13
HMGB1P23-201ENST00000518743 NLRP7Q8WX94 980 aa8.01□□□□□ -1.13
HMGB1P23-201ENST00000518743 EYA1Q99502 592 aa8.01□□□□□ -1.13
HMGB1P23-201ENST00000518743 ACIN1Q9UKV3 1341 aaKnown RBP8.01□□□□□ -1.13
HMGB1P23-201ENST00000518743 ADAMTSL3P82987 1691 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 PATL2C9JE40 543 aaKnown RBP8□□□□□ -1.13
HMGB1P23-201ENST00000518743 KRTAP3-3Q9BYR6 98 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 KRTAP3-2Q9BYR7 98 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 SNRKQ9NRH2 765 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 LIMD1Q9UGP4 676 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 LHX6Q9UPM6 363 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 FGD5Q6ZNL6 1462 aa8□□□□□ -1.13
HMGB1P23-201ENST00000518743 DDX11L8A8MPP1 907 aa7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 SLC4A3P48751 1232 aa7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUP160Q12769 1436 aa7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 TMEM134Q9H6X4 195 aa7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 MADDQ8WXG6 1647 aa7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 ARID4BQ4LE39 1312 aaPredicted RBP7.99□□□□□ -1.13
HMGB1P23-201ENST00000518743 GLI2P10070 1586 aa7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUTM2BA6NNL0 878 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUTM2EB1AL46 878 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUTM2DQ5VT03 806 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUTM2AQ8IVF1 878 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 CALR3Q96L12 384 aaKnown RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 RIMS1Q86UR5 1692 aaKnown RBP7.98□□□□□ -1.13
HMGB1P23-201ENST00000518743 UBAP1LF5GYI3 381 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 LILRB3O75022 631 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 WASHC4Q2M389 1173 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 NUDT18Q6ZVK8 323 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 MTMR14Q8NCE2 650 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 TATDN2Q93075 761 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 ZBTB3Q9H5J0 574 aa7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 TTBK1Q5TCY1 1321 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P23-201ENST00000518743 ASXL2Q76L83 1435 aa7.96□□□□□ -1.13
HMGB1P23-201ENST00000518743 TRIM6-TRIM34B2RNG4 842 aa7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 KDM4AO75164 1064 aa7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 NPM2Q86SE8 214 aaKnown RBP7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 GDPD2Q9HCC8 539 aa7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 PNMA3Q9UL41 463 aa7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 NDUFB9Q9Y6M9 179 aa7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 TOP2AP11388 1531 aaKnown RBP7.96□□□□□ -1.14
HMGB1P23-201ENST00000518743 PLB1Q6P1J6 1458 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 MOXD2PA6NHM9 499 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 AP1G2O75843 785 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 ZNF687Q8N1G0 1237 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 RDH13Q8NBN7 331 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 MAP3K4Q9Y6R4 1608 aa7.95□□□□□ -1.14
HMGB1P23-201ENST00000518743 ABL2P42684 1182 aa7.94□□□□□ -1.14
HMGB1P23-201ENST00000518743 HDGFP51858 240 aaKnown RBP7.94□□□□□ -1.14
HMGB1P23-201ENST00000518743 GRIPAP1Q4V328 841 aa7.94□□□□□ -1.14
HMGB1P23-201ENST00000518743 CFAP43Q8NDM7 1665 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 USP17L8P0C7I0 530 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 CSPP1Q1MSJ5 1256 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 SPNS2Q8IVW8 549 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 HELBQ8NG08 1087 aaPredicted RBP7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 TSKSQ9UJT2 592 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 ADAMTS12P58397 1594 aa7.93□□□□□ -1.14
HMGB1P23-201ENST00000518743 BCORL1Q5H9F3 1711 aa7.92□□□□□ -1.14
HMGB1P23-201ENST00000518743 COL9A1P20849 921 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms