RNA–Protein interactions for RNA: ENST00000514442.5

TCOF1-213, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,195 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-213ENST00000514442 CCDC173Q0VFZ6 552 aa16.15■□□□□ 0.18
TCOF1-213ENST00000514442 ZNF771Q7L3S4 317 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-213ENST00000514442 DZIP1LQ8IYY4 767 aaKnown RBP16.15■□□□□ 0.18
TCOF1-213ENST00000514442 HDAC5Q9UQL6 1122 aa16.15■□□□□ 0.18
TCOF1-213ENST00000514442 NASPP49321 788 aaPredicted RBP16.15■□□□□ 0.18
TCOF1-213ENST00000514442 CCDC141Q6ZP82 1450 aa16.14■□□□□ 0.17
TCOF1-213ENST00000514442 RILPL2Q969X0 211 aa16.14■□□□□ 0.17
TCOF1-213ENST00000514442 ROCK1Q13464 1354 aa16.14■□□□□ 0.17
TCOF1-213ENST00000514442 PANK1Q8TE04 598 aa16.14■□□□□ 0.17
TCOF1-213ENST00000514442 TCP11L2Q8N4U5 519 aa16.13■□□□□ 0.17
TCOF1-213ENST00000514442 TTC5Q8N0Z6 440 aa16.13■□□□□ 0.17
TCOF1-213ENST00000514442 GNL2Q13823 731 aaKnown RBP16.12■□□□□ 0.17
TCOF1-213ENST00000514442 TSPYL4Q9UJ04 414 aa16.12■□□□□ 0.17
TCOF1-213ENST00000514442 DDX19BQ9UMR2 479 aa16.12■□□□□ 0.17
TCOF1-213ENST00000514442 CDK19Q9BWU1 502 aa16.12■□□□□ 0.17
TCOF1-213ENST00000514442 CABP1Q9NZU7 370 aa16.12■□□□□ 0.17
TCOF1-213ENST00000514442 ATF3P18847 181 aa16.11■□□□□ 0.17
TCOF1-213ENST00000514442 CLCN1P35523 988 aa16.11■□□□□ 0.17
TCOF1-213ENST00000514442 FKBP5Q13451 457 aaPredicted RBP16.11■□□□□ 0.17
TCOF1-213ENST00000514442 PNISRQ8TF01 805 aaKnown RBP16.1■□□□□ 0.17
TCOF1-213ENST00000514442 GNAI1P63096 354 aa16.1■□□□□ 0.17
TCOF1-213ENST00000514442 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
TCOF1-213ENST00000514442 GOLGA6L6A8MZA4 724 aa16.1■□□□□ 0.17
TCOF1-213ENST00000514442 GTF2E1P29083 439 aaPredicted RBP16.1■□□□□ 0.17
TCOF1-213ENST00000514442 DRC7Q8IY82 874 aa16.1■□□□□ 0.17
TCOF1-213ENST00000514442 KIF14Q15058 1648 aa16.1■□□□□ 0.17
TCOF1-213ENST00000514442 HSP90B1P14625 803 aaKnown RBP16.09■□□□□ 0.17
TCOF1-213ENST00000514442 SYTL4Q96C24 671 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-213ENST00000514442 SLC52A1Q9NWF4 448 aa16.09■□□□□ 0.17
TCOF1-213ENST00000514442 ESCO1Q5FWF5 840 aa16.09■□□□□ 0.17
TCOF1-213ENST00000514442 PRKAR2BP31323 418 aa16.09■□□□□ 0.17
TCOF1-213ENST00000514442 MCM4P33991 863 aa16.09■□□□□ 0.17
TCOF1-213ENST00000514442 FOXD4L5Q5VV16 416 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-213ENST00000514442 ABTB2Q8N961 1025 aa16.09■□□□□ 0.17
TCOF1-213ENST00000514442 FOXD4L4Q8WXT5 416 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-213ENST00000514442 C9orf78Q9NZ63 289 aaPredicted RBP16.09■□□□□ 0.17
TCOF1-213ENST00000514442 API5Q9BZZ5 524 aaKnown RBP16.08■□□□□ 0.16
TCOF1-213ENST00000514442 NLRP2Q9NX02 1062 aa16.08■□□□□ 0.16
TCOF1-213ENST00000514442 C22orf23Q9BZE7 217 aa16.08■□□□□ 0.16
TCOF1-213ENST00000514442 CD109Q6YHK3 1445 aa16.07■□□□□ 0.16
TCOF1-213ENST00000514442 PHF14O94880 888 aa16.07■□□□□ 0.16
TCOF1-213ENST00000514442 ANKRD30BQ9BXX2 1392 aa16.07■□□□□ 0.16
TCOF1-213ENST00000514442 CCDC39Q9UFE4 941 aa16.06■□□□□ 0.16
TCOF1-213ENST00000514442 NEXNQ0ZGT2 675 aa16.06■□□□□ 0.16
TCOF1-213ENST00000514442 RAPGEF4Q8WZA2 1011 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 UQCRHLA0A096LP55 91 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 UQCRHP07919 91 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 MAP3K1Q13233 1512 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 THOC2Q8NI27 1593 aaKnown RBP16.05■□□□□ 0.16
TCOF1-213ENST00000514442 KIF16BQ96L93 1317 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 ADGRL1O94910 1474 aa16.05■□□□□ 0.16
TCOF1-213ENST00000514442 TSR2Q969E8 191 aaKnown RBP16.04■□□□□ 0.16
TCOF1-213ENST00000514442 PROSER2Q86WR7 435 aaPredicted RBP16.04■□□□□ 0.16
TCOF1-213ENST00000514442 LNPKQ9C0E8 428 aa16.03■□□□□ 0.16
TCOF1-213ENST00000514442 MAPKBP1O60336 1514 aa16.03■□□□□ 0.16
TCOF1-213ENST00000514442 EXOSC9Q06265 439 aaKnown RBP16.03■□□□□ 0.16
TCOF1-213ENST00000514442 TOMM22Q9NS69 142 aa16.03■□□□□ 0.16
TCOF1-213ENST00000514442 THEMISQ8N1K5 641 aaPredicted RBP16.03■□□□□ 0.16
TCOF1-213ENST00000514442 ST18O60284 1047 aa16.02■□□□□ 0.16
TCOF1-213ENST00000514442 AIMP1Q12904 312 aaKnown RBP16.02■□□□□ 0.16
TCOF1-213ENST00000514442 ZSCAN30Q86W11 494 aa16.02■□□□□ 0.16
TCOF1-213ENST00000514442 NCOA1Q15788 1441 aa16.02■□□□□ 0.16
TCOF1-213ENST00000514442 NRDCO43847 1150 aa16.01■□□□□ 0.15
TCOF1-213ENST00000514442 RTEL1-TNFRSF6BF6WH68 1400 aa16.01■□□□□ 0.15
TCOF1-213ENST00000514442 GPRASP1Q5JY77 1395 aa16.01■□□□□ 0.15
TCOF1-213ENST00000514442 TMX4Q9H1E5 349 aaPredicted RBP16■□□□□ 0.15
TCOF1-213ENST00000514442 BCAR3O75815 825 aa16■□□□□ 0.15
TCOF1-213ENST00000514442 SKAP1Q86WV1 359 aa16■□□□□ 0.15
TCOF1-213ENST00000514442 RPGRIP1LQ68CZ1 1315 aa16■□□□□ 0.15
TCOF1-213ENST00000514442 AAMPQ13685 434 aa15.99■□□□□ 0.15
TCOF1-213ENST00000514442 RRAGDQ9NQL2 400 aaPredicted RBP15.99■□□□□ 0.15
TCOF1-213ENST00000514442 SULT6B1Q6IMI4 303 aa15.99■□□□□ 0.15
TCOF1-213ENST00000514442 RRS1Q15050 365 aaKnown RBP15.99■□□□□ 0.15
TCOF1-213ENST00000514442 FOXD4L6Q3SYB3 417 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-213ENST00000514442 FOXD4L3Q6VB84 417 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-213ENST00000514442 WAPLQ7Z5K2 1190 aa15.98■□□□□ 0.15
TCOF1-213ENST00000514442 DDX58O95786 925 aaKnown RBP15.98■□□□□ 0.15
TCOF1-213ENST00000514442 FBXO31Q5XUX0 539 aaPredicted RBP15.98■□□□□ 0.15
TCOF1-213ENST00000514442 DIAPH3Q9NSV4 1193 aa15.98■□□□□ 0.15
TCOF1-213ENST00000514442 XRCC6P12956 609 aaKnown RBP eCLIP15.97■□□□□ 0.15
TCOF1-213ENST00000514442 HMGN5P82970 282 aaKnown RBP15.97■□□□□ 0.15
TCOF1-213ENST00000514442 IFIT2P09913 472 aaKnown RBP15.97■□□□□ 0.15
TCOF1-213ENST00000514442 MCTP1Q6DN14 999 aa15.97■□□□□ 0.15
TCOF1-213ENST00000514442 ADGRF5Q8IZF2 1346 aa15.97■□□□□ 0.15
TCOF1-213ENST00000514442 NSD3Q9BZ95 1437 aa15.96■□□□□ 0.15
TCOF1-213ENST00000514442 G3V3G9 751 aa15.96■□□□□ 0.15
TCOF1-213ENST00000514442 DCAF8Q5TAQ9 597 aa15.96■□□□□ 0.15
TCOF1-213ENST00000514442 NUCB2P80303 420 aa15.96■□□□□ 0.15
TCOF1-213ENST00000514442 C1orf115Q9H7X2 142 aa15.96■□□□□ 0.15
TCOF1-213ENST00000514442 XPCQ01831 940 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-213ENST00000514442 TWISTNBQ3B726 338 aaPredicted RBP15.95■□□□□ 0.14
TCOF1-213ENST00000514442 RIC3Q7Z5B4 369 aa15.95■□□□□ 0.14
TCOF1-213ENST00000514442 TAF3Q5VWG9 929 aa15.95■□□□□ 0.14
TCOF1-213ENST00000514442 PRDM10Q9NQV6 1147 aa15.95■□□□□ 0.14
TCOF1-213ENST00000514442 GAS2L2Q8NHY3 880 aa15.94■□□□□ 0.14
TCOF1-213ENST00000514442 PTPRKQ15262 1439 aa15.94■□□□□ 0.14
TCOF1-213ENST00000514442 CCDC66A2RUB6 948 aa15.94■□□□□ 0.14
TCOF1-213ENST00000514442 GPATCH8Q9UKJ3 1502 aaKnown RBP15.94■□□□□ 0.14
TCOF1-213ENST00000514442 FANCAO15360 1455 aa15.94■□□□□ 0.14
TCOF1-213ENST00000514442 PDE4CQ08493 712 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms