RNA–Protein interactions for RNA: ENST00000514335.1

NIPBL-208, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 2,948 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-208ENST00000514335 GOLGA6CA6NDK9 693 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 GOLGA6BA6NDN3 693 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 GOLGA6DP0CG33 693 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 PIK3R5Q8WYR1 880 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 GOLGA6AQ9NYA3 693 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 PPME1Q9Y570 386 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 NPATQ14207 1427 aa9.23□□□□□ -0.93
NIPBL-208ENST00000514335 PLA2R1Q13018 1463 aa9.22□□□□□ -0.93
NIPBL-208ENST00000514335 GET4Q7L5D6 327 aaPredicted RBP9.22□□□□□ -0.93
NIPBL-208ENST00000514335 PRXQ9BXM0 1461 aa9.22□□□□□ -0.93
NIPBL-208ENST00000514335 TPD52L2O43399 206 aaKnown RBP9.22□□□□□ -0.93
NIPBL-208ENST00000514335 FAM69CQ0P6D2 419 aa9.22□□□□□ -0.93
NIPBL-208ENST00000514335 PKD2Q13563 968 aa9.22□□□□□ -0.93
NIPBL-208ENST00000514335 CNTLNQ9NXG0 1405 aa9.21□□□□□ -0.93
NIPBL-208ENST00000514335 RHBDL3P58872 404 aa9.21□□□□□ -0.93
NIPBL-208ENST00000514335 TSPAN18Q96SJ8 248 aa9.21□□□□□ -0.93
NIPBL-208ENST00000514335 MTA3Q9BTC8 594 aa9.21□□□□□ -0.93
NIPBL-208ENST00000514335 PNNQ9H307 717 aaKnown RBP9.21□□□□□ -0.93
NIPBL-208ENST00000514335 MYH16Q9H6N6 1097 aa9.21□□□□□ -0.93
NIPBL-208ENST00000514335 MADDQ8WXG6 1647 aa9.21□□□□□ -0.94
NIPBL-208ENST00000514335 SPATA31D1Q6ZQQ2 1576 aa9.21□□□□□ -0.94
NIPBL-208ENST00000514335 SUGT1Q9Y2Z0 365 aa9.21□□□□□ -0.94
NIPBL-208ENST00000514335 ZFYVE16Q7Z3T8 1539 aa9.21□□□□□ -0.94
NIPBL-208ENST00000514335 COL17A1Q9UMD9 1497 aaPredicted RBP9.21□□□□□ -0.94
NIPBL-208ENST00000514335 AKNAQ7Z591 1439 aa9.2□□□□□ -0.94
NIPBL-208ENST00000514335 PEX14O75381 377 aa9.2□□□□□ -0.94
NIPBL-208ENST00000514335 CCDC184Q52MB2 194 aa9.2□□□□□ -0.94
NIPBL-208ENST00000514335 NBPF10Q6P3W6 841 aaKnown RBP9.2□□□□□ -0.94
NIPBL-208ENST00000514335 DDX46Q7L014 1031 aaKnown RBP9.2□□□□□ -0.94
NIPBL-208ENST00000514335 CARMIL1Q5VZK9 1371 aa9.2□□□□□ -0.94
NIPBL-208ENST00000514335 YY1AP1Q9H869 796 aa9.2□□□□□ -0.94
NIPBL-208ENST00000514335 CD109Q6YHK3 1445 aa9.19□□□□□ -0.94
NIPBL-208ENST00000514335 NBPF6Q5VWK0 638 aa9.19□□□□□ -0.94
NIPBL-208ENST00000514335 NBPF5PQ86XG9 351 aaPredicted RBP9.19□□□□□ -0.94
NIPBL-208ENST00000514335 NBPF4Q96M43 638 aa9.19□□□□□ -0.94
NIPBL-208ENST00000514335 KDM5AP29375 1690 aaKnown RBP9.19□□□□□ -0.94
NIPBL-208ENST00000514335 ERBB3P21860 1342 aa9.19□□□□□ -0.94
NIPBL-208ENST00000514335 GSE1Q14687 1217 aa9.18□□□□□ -0.94
NIPBL-208ENST00000514335 SYNMO15061 1565 aa9.18□□□□□ -0.94
NIPBL-208ENST00000514335 CREBRFQ8IUR6 639 aa9.18□□□□□ -0.94
NIPBL-208ENST00000514335 SDR16C5Q8N3Y7 309 aa9.18□□□□□ -0.94
NIPBL-208ENST00000514335 MLECQ14165 292 aa9.18□□□□□ -0.94
NIPBL-208ENST00000514335 DCAF11Q8TEB1 546 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 RIOK3O14730 519 aaKnown RBP9.17□□□□□ -0.94
NIPBL-208ENST00000514335 SLC20A2Q08357 652 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 LMOD3Q0VAK6 560 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 MTA1Q13330 715 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 SIRT1Q96EB6 747 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 MYO5CQ9NQX4 1742 aa9.17□□□□□ -0.94
NIPBL-208ENST00000514335 KIF20AO95235 890 aa9.16□□□□□ -0.94
NIPBL-208ENST00000514335 SATB1Q01826 763 aa9.16□□□□□ -0.94
NIPBL-208ENST00000514335 TAF3Q5VWG9 929 aa9.16□□□□□ -0.94
NIPBL-208ENST00000514335 ANKRD23Q86SG2 305 aa9.16□□□□□ -0.94
NIPBL-208ENST00000514335 RIMS1Q86UR5 1692 aaKnown RBP9.16□□□□□ -0.94
NIPBL-208ENST00000514335 IPO8O15397 1037 aaKnown RBP9.16□□□□□ -0.94
NIPBL-208ENST00000514335 PPFIA4O75335 1185 aa9.16□□□□□ -0.94
NIPBL-208ENST00000514335 PROCA1Q8NCQ7 364 aaPredicted RBP9.16□□□□□ -0.94
NIPBL-208ENST00000514335 C9orf84Q5VXU9 1444 aa9.15□□□□□ -0.94
NIPBL-208ENST00000514335 DEPDC5O75140 1603 aa9.15□□□□□ -0.94
NIPBL-208ENST00000514335 LTBP4Q8N2S1 1624 aa9.15□□□□□ -0.94
NIPBL-208ENST00000514335 TNNT2P45379 298 aaPredicted RBP9.15□□□□□ -0.95
NIPBL-208ENST00000514335 ZNF280DQ6N043 979 aa9.15□□□□□ -0.95
NIPBL-208ENST00000514335 CALR3Q96L12 384 aaKnown RBP9.15□□□□□ -0.95
NIPBL-208ENST00000514335 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.15□□□□□ -0.95
NIPBL-208ENST00000514335 RAI14Q9P0K7 980 aa9.15□□□□□ -0.95
NIPBL-208ENST00000514335 PNMA2Q9UL42 364 aa9.15□□□□□ -0.95
NIPBL-208ENST00000514335 STRCQ7RTU9 1775 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 KIF4AO95239 1232 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 FOSBP53539 338 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 IRX5P78411 483 aaPredicted RBP9.14□□□□□ -0.95
NIPBL-208ENST00000514335 ZNF662Q6ZS27 426 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 MLH3Q9UHC1 1453 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 CPS1P31327 1500 aa9.14□□□□□ -0.95
NIPBL-208ENST00000514335 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.14□□□□□ -0.95
NIPBL-208ENST00000514335 CT47A1Q5JQC4 288 aaPredicted RBP9.14□□□□□ -0.95
NIPBL-208ENST00000514335 EPB41L2O43491 1005 aaKnown RBP9.13□□□□□ -0.95
NIPBL-208ENST00000514335 DMRT2Q9Y5R5 561 aa9.13□□□□□ -0.95
NIPBL-208ENST00000514335 DENND4BO75064 1496 aaPredicted RBP9.13□□□□□ -0.95
NIPBL-208ENST00000514335 SETD1BQ9UPS6 1966 aaKnown RBP9.13□□□□□ -0.95
NIPBL-208ENST00000514335 CCDC181Q5TID7 509 aa9.13□□□□□ -0.95
NIPBL-208ENST00000514335 KRBA2Q6ZNG9 492 aa9.13□□□□□ -0.95
NIPBL-208ENST00000514335 ITSN2Q9NZM3 1697 aa9.12□□□□□ -0.95
NIPBL-208ENST00000514335 ZSCAN20P17040 1043 aaPredicted RBP9.12□□□□□ -0.95
NIPBL-208ENST00000514335 NUTM2GQ5VZR2 741 aa9.12□□□□□ -0.95
NIPBL-208ENST00000514335 SSR1P43307 286 aaKnown RBP9.12□□□□□ -0.95
NIPBL-208ENST00000514335 PAX3P23760 479 aa9.11□□□□□ -0.95
NIPBL-208ENST00000514335 KIF14Q15058 1648 aa9.11□□□□□ -0.95
NIPBL-208ENST00000514335 HECW1Q76N89 1606 aa9.11□□□□□ -0.95
NIPBL-208ENST00000514335 HDAC1Q13547 482 aaPredicted RBP9.11□□□□□ -0.95
NIPBL-208ENST00000514335 MRVI1Q9Y6F6 885 aa9.11□□□□□ -0.95
NIPBL-208ENST00000514335 ZC3H13Q5T200 1668 aaKnown RBP9.11□□□□□ -0.95
NIPBL-208ENST00000514335 MAP4K4O95819 1239 aaPredicted RBP9.11□□□□□ -0.95
NIPBL-208ENST00000514335 GORABQ5T7V8 394 aa9.11□□□□□ -0.95
NIPBL-208ENST00000514335 CCDC97Q96F63 343 aaPredicted RBP9.11□□□□□ -0.95
NIPBL-208ENST00000514335 PLXNC1O60486 1568 aa9.1□□□□□ -0.95
NIPBL-208ENST00000514335 UNCXA6NJT0 531 aa9.1□□□□□ -0.95
NIPBL-208ENST00000514335 ZKSCAN8Q15776 578 aaPredicted RBP9.1□□□□□ -0.95
NIPBL-208ENST00000514335 KCNV2Q8TDN2 545 aa9.1□□□□□ -0.95
NIPBL-208ENST00000514335 MICAL1Q8TDZ2 1067 aa9.1□□□□□ -0.95
NIPBL-208ENST00000514335 ATP10AO60312 1499 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms