RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 TECPR2O15040 1411 aa21.8■■□□□ 1.08
NUP54-214ENST00000514307 CABP2Q9NPB3 220 aa21.79■■□□□ 1.08
NUP54-214ENST00000514307 STRCQ7RTU9 1775 aa21.79■■□□□ 1.08
NUP54-214ENST00000514307 ZNF142P52746 1687 aaPredicted RBP21.78■■□□□ 1.08
NUP54-214ENST00000514307 ATAD2Q6PL18 1390 aa21.77■■□□□ 1.08
NUP54-214ENST00000514307 NINLQ9Y2I6 1382 aa21.77■■□□□ 1.08
NUP54-214ENST00000514307 NRXN3Q9Y4C0 1643 aa21.77■■□□□ 1.07
NUP54-214ENST00000514307 WASLO00401 505 aaPredicted RBP21.76■■□□□ 1.07
NUP54-214ENST00000514307 DIP2AQ14689 1571 aa21.76■■□□□ 1.07
NUP54-214ENST00000514307 SLC12A5Q9H2X9 1139 aa21.76■■□□□ 1.07
NUP54-214ENST00000514307 TERF2IPQ9NYB0 399 aa21.76■■□□□ 1.07
NUP54-214ENST00000514307 NCKAP5LQ9HCH0 1330 aa21.75■■□□□ 1.07
NUP54-214ENST00000514307 NPHP4O75161 1426 aaPredicted RBP21.73■■□□□ 1.07
NUP54-214ENST00000514307 QRICH2Q9H0J4 1663 aa21.72■■□□□ 1.07
NUP54-214ENST00000514307 ARHGEF28Q8N1W1 1705 aaKnown RBP21.72■■□□□ 1.07
NUP54-214ENST00000514307 CNGB1Q14028 1251 aaPredicted RBP21.72■■□□□ 1.07
NUP54-214ENST00000514307 ROBO2Q9HCK4 1378 aa21.72■■□□□ 1.07
NUP54-214ENST00000514307 HDGFL2Q7Z4V5 671 aaPredicted RBP21.71■■□□□ 1.07
NUP54-214ENST00000514307 NPC1L1Q9UHC9 1359 aa21.71■■□□□ 1.07
NUP54-214ENST00000514307 PLEKHH1Q9ULM0 1364 aa21.71■■□□□ 1.07
NUP54-214ENST00000514307 KCNA6P17658 529 aa21.7■■□□□ 1.06
NUP54-214ENST00000514307 SETD1AO15047 1707 aaKnown RBP21.69■■□□□ 1.06
NUP54-214ENST00000514307 CC2D1BQ5T0F9 858 aaKnown RBP21.69■■□□□ 1.06
NUP54-214ENST00000514307 MYBBP1AQ9BQG0 1328 aaKnown RBP21.69■■□□□ 1.06
NUP54-214ENST00000514307 PTPRUQ92729 1446 aa21.69■■□□□ 1.06
NUP54-214ENST00000514307 CENPBP07199 599 aaPredicted RBP21.68■■□□□ 1.06
NUP54-214ENST00000514307 NUDT16Q96DE0 195 aaKnown RBP21.68■■□□□ 1.06
NUP54-214ENST00000514307 CARD14Q9BXL6 1004 aa21.68■■□□□ 1.06
NUP54-214ENST00000514307 MRS2Q9HD23 443 aa21.68■■□□□ 1.06
NUP54-214ENST00000514307 CCDC61Q9Y6R9 512 aa21.68■■□□□ 1.06
NUP54-214ENST00000514307 AMER1Q5JTC6 1135 aaPredicted RBP21.67■■□□□ 1.06
NUP54-214ENST00000514307 CABP1Q9NZU7 370 aa21.67■■□□□ 1.06
NUP54-214ENST00000514307 CPS1P31327 1500 aa21.66■■□□□ 1.06
NUP54-214ENST00000514307 TULP4Q9NRJ4 1543 aa21.65■■□□□ 1.06
NUP54-214ENST00000514307 PTCH1Q13635 1447 aa21.65■■□□□ 1.06
NUP54-214ENST00000514307 ANKRD36BQ8N2N9 1353 aa21.65■■□□□ 1.06
NUP54-214ENST00000514307 YTHDC1Q96MU7 727 aaKnown RBP21.65■■□□□ 1.06
NUP54-214ENST00000514307 ZNF692Q9BU19 519 aaPredicted RBP21.65■■□□□ 1.06
NUP54-214ENST00000514307 CGNL1Q0VF96 1302 aa21.64■■□□□ 1.05
NUP54-214ENST00000514307 NLRP13Q86W25 1043 aa21.64■■□□□ 1.05
NUP54-214ENST00000514307 PARD3Q8TEW0 1356 aa21.63■■□□□ 1.05
NUP54-214ENST00000514307 KNDC1Q76NI1 1749 aa21.63■■□□□ 1.05
NUP54-214ENST00000514307 BRD4O60885 1362 aaPredicted RBP21.61■■□□□ 1.05
NUP54-214ENST00000514307 MORC1Q86VD1 984 aa21.59■■□□□ 1.05
NUP54-214ENST00000514307 PROSER2Q86WR7 435 aaPredicted RBP21.59■■□□□ 1.05
NUP54-214ENST00000514307 PLEKHG3A1L390 1219 aa21.58■■□□□ 1.05
NUP54-214ENST00000514307 DMRT2Q9Y5R5 561 aa21.57■■□□□ 1.04
NUP54-214ENST00000514307 NSD3Q9BZ95 1437 aa21.56■■□□□ 1.04
NUP54-214ENST00000514307 C14orf37Q86TY3 774 aa21.56■■□□□ 1.04
NUP54-214ENST00000514307 NSD2O96028 1365 aa21.56■■□□□ 1.04
NUP54-214ENST00000514307 PPP2R1AP30153 589 aa21.55■■□□□ 1.04
NUP54-214ENST00000514307 CCDC184Q52MB2 194 aa21.55■■□□□ 1.04
NUP54-214ENST00000514307 FAM9BQ8IZU0 186 aa21.54■■□□□ 1.04
NUP54-214ENST00000514307 PPIP5K1Q6PFW1 1433 aa21.53■■□□□ 1.04
NUP54-214ENST00000514307 A0A1W2PP64 1363 aa21.52■■□□□ 1.04
NUP54-214ENST00000514307 PNISRQ8TF01 805 aaKnown RBP21.52■■□□□ 1.04
NUP54-214ENST00000514307 ATP7BP35670 1465 aa21.52■■□□□ 1.03
NUP54-214ENST00000514307 ILDR1Q86SU0 546 aaPredicted RBP21.51■■□□□ 1.03
NUP54-214ENST00000514307 MYOM1P52179 1685 aa21.5■■□□□ 1.03
NUP54-214ENST00000514307 PRR36Q9H6K5 1346 aa21.5■■□□□ 1.03
NUP54-214ENST00000514307 FYB1O15117 783 aa21.49■■□□□ 1.03
NUP54-214ENST00000514307 C19orf44Q9H6X5 657 aa21.49■■□□□ 1.03
NUP54-214ENST00000514307 XRN1Q8IZH2 1706 aaKnown RBP21.49■■□□□ 1.03
NUP54-214ENST00000514307 ADGRB2O60241 1585 aa21.48■■□□□ 1.03
NUP54-214ENST00000514307 NUTM2FA1L443 756 aa21.48■■□□□ 1.03
NUP54-214ENST00000514307 NGDNQ8NEJ9 315 aaKnown RBP21.48■■□□□ 1.03
NUP54-214ENST00000514307 CPSF1Q10570 1443 aaKnown RBP21.47■■□□□ 1.03
NUP54-214ENST00000514307 ANKARQ7Z5J8 1434 aa21.47■■□□□ 1.03
NUP54-214ENST00000514307 ACEP12821 1306 aa21.47■■□□□ 1.03
NUP54-214ENST00000514307 NCOA3Q9Y6Q9 1424 aa21.46■■□□□ 1.03
NUP54-214ENST00000514307 SIPA1L2Q9P2F8 1722 aaPredicted RBP21.46■■□□□ 1.03
NUP54-214ENST00000514307 CHD2O14647 1828 aaKnown RBP21.46■■□□□ 1.03
NUP54-214ENST00000514307 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.45■■□□□ 1.02
NUP54-214ENST00000514307 CFAP53Q96M91 514 aa21.45■■□□□ 1.02
NUP54-214ENST00000514307 EDC4Q6P2E9 1401 aaKnown RBP21.44■■□□□ 1.02
NUP54-214ENST00000514307 CD163L1Q9NR16 1453 aa21.44■■□□□ 1.02
NUP54-214ENST00000514307 GGNBP2Q9H3C7 697 aa21.43■■□□□ 1.02
NUP54-214ENST00000514307 ATF3P18847 181 aa21.42■■□□□ 1.02
NUP54-214ENST00000514307 NKTRP30414 1462 aaKnown RBP21.42■■□□□ 1.02
NUP54-214ENST00000514307 HNRNPUQ00839 825 aaKnown RBP eCLIP21.42■■□□□ 1.02
NUP54-214ENST00000514307 WDR43Q15061 677 aaKnown RBP eCLIP21.42■■□□□ 1.02
NUP54-214ENST00000514307 RBM33Q96EV2 1170 aaKnown RBP21.42■■□□□ 1.02
NUP54-214ENST00000514307 ADGRL3Q9HAR2 1447 aa21.42■■□□□ 1.02
NUP54-214ENST00000514307 LTBP4Q8N2S1 1624 aa21.41■■□□□ 1.02
NUP54-214ENST00000514307 PMFBP1Q8TBY8 1022 aa21.41■■□□□ 1.02
NUP54-214ENST00000514307 COG3Q96JB2 828 aa21.41■■□□□ 1.02
NUP54-214ENST00000514307 PHF8Q9UPP1 1060 aa21.41■■□□□ 1.02
NUP54-214ENST00000514307 TNNT2P45379 298 aaPredicted RBP21.4■■□□□ 1.02
NUP54-214ENST00000514307 TTC21BQ7Z4L5 1316 aa21.39■■□□□ 1.01
NUP54-214ENST00000514307 TTC21AQ8NDW8 1320 aa21.39■■□□□ 1.01
NUP54-214ENST00000514307 USP32Q8NFA0 1604 aa21.39■■□□□ 1.01
NUP54-214ENST00000514307 ZNF335Q9H4Z2 1342 aaPredicted RBP21.38■■□□□ 1.01
NUP54-214ENST00000514307 SCAF1Q9H7N4 1312 aaKnown RBP21.38■■□□□ 1.01
NUP54-214ENST00000514307 MTHFSP49914 203 aa21.38■■□□□ 1.01
NUP54-214ENST00000514307 ESCO1Q5FWF5 840 aa21.38■■□□□ 1.01
NUP54-214ENST00000514307 POLR3AO14802 1390 aaPredicted RBP21.37■■□□□ 1.01
NUP54-214ENST00000514307 NWD1Q149M9 1564 aa21.37■■□□□ 1.01
NUP54-214ENST00000514307 CADPS2Q86UW7 1296 aa21.37■■□□□ 1.01
NUP54-214ENST00000514307 INSRP06213 1382 aa21.36■■□□□ 1.01
NUP54-214ENST00000514307 PSME1Q06323 249 aa21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms