RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 KIF2CQ99661 725 aa8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 CUX1P39880 1505 aa8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 RIOK3O14730 519 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 GTPBP4Q9BZE4 634 aaKnown RBP8.95□□□□□ -0.98
LIMCH1-207ENST00000508466 K7ELQ4 463 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 LETM1O95202 739 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 CSPP1Q1MSJ5 1256 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 SMARCA5O60264 1052 aaPredicted RBP8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 KIF20AO95235 890 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 WWC1Q8IX03 1113 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 SMC5Q8IY18 1101 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 ZNF592Q92610 1267 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 NGEFQ8N5V2 710 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 CCDC39Q9UFE4 941 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 CHMP3Q9Y3E7 222 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 EIF3AQ14152 1382 aaKnown RBP8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 CAMSAP2Q08AD1 1489 aa8.94□□□□□ -0.98
LIMCH1-207ENST00000508466 MIA2Q96PC5 1412 aa8.93□□□□□ -0.98
LIMCH1-207ENST00000508466 ZNF521Q96K83 1311 aa8.93□□□□□ -0.98
LIMCH1-207ENST00000508466 MTERF4Q7Z6M4 381 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-207ENST00000508466 LARP6Q9BRS8 491 aaKnown RBP8.93□□□□□ -0.98
LIMCH1-207ENST00000508466 PDE3AQ14432 1141 aa8.93□□□□□ -0.98
LIMCH1-207ENST00000508466 ELL2O00472 640 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-207ENST00000508466 PDLIM2Q96JY6 352 aa8.92□□□□□ -0.98
LIMCH1-207ENST00000508466 ISY1Q9ULR0 285 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-207ENST00000508466 U2SURPO15042 1029 aaKnown RBP8.92□□□□□ -0.98
LIMCH1-207ENST00000508466 GADD45BO75293 160 aaPredicted RBP8.92□□□□□ -0.98
LIMCH1-207ENST00000508466 TERF1P54274 439 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 SRPK2P78362 688 aaKnown RBP8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 EP400NLQ6ZTU2 488 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 SYTL4Q96C24 671 aaPredicted RBP8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 PYCARDQ9ULZ3 195 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 CAPN2P17655 700 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 NUP155O75694 1391 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 TBC1D9Q6ZT07 1266 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 SMC4Q9NTJ3 1288 aa8.91□□□□□ -0.98
LIMCH1-207ENST00000508466 HCLS1P14317 486 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-207ENST00000508466 C16orf71Q8IYS4 520 aaPredicted RBP8.9□□□□□ -0.98
LIMCH1-207ENST00000508466 RTEL1-TNFRSF6BF6WH68 1400 aa8.9□□□□□ -0.98
LIMCH1-207ENST00000508466 ADCY5O95622 1261 aa8.9□□□□□ -0.99
LIMCH1-207ENST00000508466 C16orf45Q96MC5 204 aaPredicted RBP8.9□□□□□ -0.99
LIMCH1-207ENST00000508466 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.9□□□□□ -0.99
LIMCH1-207ENST00000508466 PRR29P0C7W0 189 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 ZNF445P59923 1031 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TRMT2AQ8IZ69 625 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TCP11L2Q8N4U5 519 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TESK2Q96S53 571 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 ZDHHC9Q9Y397 364 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 CASKIN1Q8WXD9 1431 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 DZIP1LQ8IYY4 767 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TOMM22Q9NS69 142 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 BLMP54132 1417 aaPredicted RBP8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 NKTRP30414 1462 aaKnown RBP8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TMF1P82094 1093 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 LRSAM1Q6UWE0 723 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 TMEM57Q8N5G2 664 aa8.89□□□□□ -0.99
LIMCH1-207ENST00000508466 MVPQ14764 893 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 RTF1Q92541 710 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 ATAD2BQ9ULI0 1458 aa8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 NOB1Q9ULX3 412 aaKnown RBP8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 ZMYM4Q5VZL5 1548 aa8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 KIF16BQ96L93 1317 aa8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 GYS2P54840 703 aa8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 IRX3P78415 501 aaPredicted RBP8.88□□□□□ -0.99
LIMCH1-207ENST00000508466 BIVM-ERCC5R4GMW8 1640 aa8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 SLFN14P0C7P3 912 aa8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 TRIM27P14373 513 aa8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 TNNT3P45378 269 aaPredicted RBP8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 EXOSC9Q06265 439 aaKnown RBP8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 LRMPQ12912 555 aa8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 ATAD2Q6PL18 1390 aa8.87□□□□□ -0.99
LIMCH1-207ENST00000508466 TSPY26PQ9H489 355 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 CFDP1Q9UEE9 299 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 LOC102724159A0A0B4J2E5 919 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 RBM25P49756 843 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 PWP2Q15269 919 aaKnown RBP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 CCDC27Q2M243 656 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 OTUD7AQ8TE49 926 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 AP5Z1O43299 807 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 GTF2F1P35269 517 aaKnown RBP eCLIP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 SSH1Q8WYL5 1049 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 SNX21Q969T3 373 aa8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 CIZ1Q9ULV3 898 aaPredicted RBP8.86□□□□□ -0.99
LIMCH1-207ENST00000508466 ZKSCAN2Q63HK3 967 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 PIBF1Q8WXW3 757 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 GTF3C6Q969F1 213 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 POLR3GO15318 223 aaPredicted RBP8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 NCBP1Q09161 790 aaKnown RBP8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 SKIDA1Q1XH10 827 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 HS1BP3Q53T59 392 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 TSHZ3Q63HK5 1081 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 GIMAP6Q6P9H5 292 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 CHD1LQ86WJ1 897 aa8.85□□□□□ -0.99
LIMCH1-207ENST00000508466 NRBP1Q9UHY1 535 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 UNC13AQ9UPW8 1703 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 KIF21AQ7Z4S6 1674 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 TIGD1Q96MW7 591 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 MYCNP04198 464 aaPredicted RBP8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 PTGS1P23219 599 aa8.84□□□□□ -0.99
LIMCH1-207ENST00000508466 DRC7Q8IY82 874 aa8.84□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms