RNA–Protein interactions for RNA: ENST00000495010.5

VARS-228, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 1,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-228ENST00000495010 NPHP3Q7Z494 1330 aa21.44■■□□□ 1.02
VARS-228ENST00000495010 FNBP4Q8N3X1 1017 aaPredicted RBP21.43■■□□□ 1.02
VARS-228ENST00000495010 PRAG1Q86YV5 1406 aa21.43■■□□□ 1.02
VARS-228ENST00000495010 PPLO60437 1756 aa21.4■■□□□ 1.02
VARS-228ENST00000495010 LRPPRCP42704 1394 aaKnown RBP21.39■■□□□ 1.02
VARS-228ENST00000495010 COL22A1Q8NFW1 1626 aaPredicted RBP21.39■■□□□ 1.01
VARS-228ENST00000495010 ATRNO75882 1429 aa21.38■■□□□ 1.01
VARS-228ENST00000495010 FOXO3O43524 673 aa21.38■■□□□ 1.01
VARS-228ENST00000495010 STK26Q9P289 416 aa21.38■■□□□ 1.01
VARS-228ENST00000495010 CDC42BPGQ6DT37 1551 aa21.37■■□□□ 1.01
VARS-228ENST00000495010 XPCQ01831 940 aaPredicted RBP21.37■■□□□ 1.01
VARS-228ENST00000495010 NUTM2FA1L443 756 aa21.36■■□□□ 1.01
VARS-228ENST00000495010 ZRANB1Q9UGI0 708 aa21.36■■□□□ 1.01
VARS-228ENST00000495010 MYOM2P54296 1465 aa21.35■■□□□ 1.01
VARS-228ENST00000495010 RGL3Q3MIN7 710 aa21.35■■□□□ 1.01
VARS-228ENST00000495010 ADGRF5Q8IZF2 1346 aa21.34■■□□□ 1.01
VARS-228ENST00000495010 WAPLQ7Z5K2 1190 aa21.34■■□□□ 1.01
VARS-228ENST00000495010 CCDC144AA2RUR9 1427 aa21.34■■□□□ 1.01
VARS-228ENST00000495010 PXDNQ92626 1479 aa21.33■■□□□ 1.01
VARS-228ENST00000495010 CCDC125Q86Z20 511 aa21.33■■□□□ 1.01
VARS-228ENST00000495010 GJD4Q96KN9 370 aaPredicted RBP21.32■■□□□ 1
VARS-228ENST00000495010 BCL9LQ86UU0 1499 aa21.31■■□□□ 1
VARS-228ENST00000495010 ANKRD30BQ9BXX2 1392 aa21.3■■□□□ 1
VARS-228ENST00000495010 MARF1Q9Y4F3 1742 aaKnown RBP21.29■■□□□ 1
VARS-228ENST00000495010 TMEM132EQ6IEE7 984 aa21.29■■□□□ 1
VARS-228ENST00000495010 HAP1P54257 671 aaPredicted RBP21.28■■□□□ 1
VARS-228ENST00000495010 TECPR2O15040 1411 aa21.28■■□□□ 1
VARS-228ENST00000495010 ABCC11Q96J66 1382 aa21.27■■□□□ 1
VARS-228ENST00000495010 UNC5CLQ8IV45 518 aa21.27■■□□□ 1
VARS-228ENST00000495010 SPATA31A3Q5VYP0 1347 aa21.26■□□□□ 0.99
VARS-228ENST00000495010 PLEKHH1Q9ULM0 1364 aa21.25■□□□□ 0.99
VARS-228ENST00000495010 KRT28Q7Z3Y7 464 aa21.25■□□□□ 0.99
VARS-228ENST00000495010 MPHOSPH9Q99550 1183 aa21.24■□□□□ 0.99
VARS-228ENST00000495010 SPATA31E1Q6ZUB1 1445 aa21.23■□□□□ 0.99
VARS-228ENST00000495010 PSME1Q06323 249 aa21.23■□□□□ 0.99
VARS-228ENST00000495010 KIF1AQ12756 1690 aa21.23■□□□□ 0.99
VARS-228ENST00000495010 KNDC1Q76NI1 1749 aa21.23■□□□□ 0.99
VARS-228ENST00000495010 YTHDC2Q9H6S0 1430 aaKnown RBP21.22■□□□□ 0.99
VARS-228ENST00000495010 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.21■□□□□ 0.99
VARS-228ENST00000495010 FMN2Q9NZ56 1722 aa21.21■□□□□ 0.99
VARS-228ENST00000495010 SF3B2Q13435 895 aaKnown RBP21.21■□□□□ 0.99
VARS-228ENST00000495010 IFT172Q9UG01 1749 aa21.21■□□□□ 0.99
VARS-228ENST00000495010 PIK3C2GO75747 1445 aa21.21■□□□□ 0.99
VARS-228ENST00000495010 RALGAPBQ86X10 1494 aa21.2■□□□□ 0.98
VARS-228ENST00000495010 PLEKHG5O94827 1062 aa21.2■□□□□ 0.98
VARS-228ENST00000495010 SIRT1Q96EB6 747 aa21.2■□□□□ 0.98
VARS-228ENST00000495010 PHF8Q9UPP1 1060 aa21.2■□□□□ 0.98
VARS-228ENST00000495010 SLIT2O94813 1529 aa21.19■□□□□ 0.98
VARS-228ENST00000495010 LMOD2Q6P5Q4 547 aa21.19■□□□□ 0.98
VARS-228ENST00000495010 CCDC9Q9Y3X0 531 aaKnown RBP21.19■□□□□ 0.98
VARS-228ENST00000495010 DHX57Q6P158 1386 aaKnown RBP21.18■□□□□ 0.98
VARS-228ENST00000495010 BLMP54132 1417 aaPredicted RBP21.18■□□□□ 0.98
VARS-228ENST00000495010 GLI3P10071 1580 aa21.17■□□□□ 0.98
VARS-228ENST00000495010 USP32Q8NFA0 1604 aa21.17■□□□□ 0.98
VARS-228ENST00000495010 TNS3Q68CZ2 1445 aa21.16■□□□□ 0.98
VARS-228ENST00000495010 SEPT12Q8IYM1 358 aa21.16■□□□□ 0.98
VARS-228ENST00000495010 CABLES1Q8TDN4 633 aa21.16■□□□□ 0.98
VARS-228ENST00000495010 C14orf93Q9H972 538 aaKnown RBP21.16■□□□□ 0.98
VARS-228ENST00000495010 VPS72Q15906 364 aa21.15■□□□□ 0.98
VARS-228ENST00000495010 SAFB2Q14151 953 aaKnown RBP eCLIP21.14■□□□□ 0.97
VARS-228ENST00000495010 CFAP70Q5T0N1 1121 aa21.13■□□□□ 0.97
VARS-228ENST00000495010 POGKQ9P215 609 aa21.13■□□□□ 0.97
VARS-228ENST00000495010 SBNO1A3KN83 1393 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 ARHGEF10O15013 1369 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 ACIN1Q9UKV3 1341 aaKnown RBP21.12■□□□□ 0.97
VARS-228ENST00000495010 A0A0G2JS52 829 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 MYT1Q01538 1121 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 DEFB132Q7Z7B7 95 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 PRAM1Q96QH2 718 aa21.12■□□□□ 0.97
VARS-228ENST00000495010 RGPD8O14715 1765 aaPredicted RBP21.11■□□□□ 0.97
VARS-228ENST00000495010 NRXN1Q9ULB1 1477 aa21.1■□□□□ 0.97
VARS-228ENST00000495010 KRT27Q7Z3Y8 459 aa21.1■□□□□ 0.97
VARS-228ENST00000495010 BRWD3Q6RI45 1802 aa21.1■□□□□ 0.97
VARS-228ENST00000495010 PMFBP1Q8TBY8 1022 aa21.09■□□□□ 0.97
VARS-228ENST00000495010 NWD2Q9ULI1 1742 aa21.08■□□□□ 0.97
VARS-228ENST00000495010 PLCH1Q4KWH8 1693 aa21.08■□□□□ 0.96
VARS-228ENST00000495010 ONECUT3O60422 494 aaPredicted RBP21.07■□□□□ 0.96
VARS-228ENST00000495010 EP400Q96L91 3159 aa21.07■□□□□ 0.96
VARS-228ENST00000495010 FAM83GA6ND36 823 aa21.06■□□□□ 0.96
VARS-228ENST00000495010 ANKARQ7Z5J8 1434 aa21.04■□□□□ 0.96
VARS-228ENST00000495010 BAG6P46379 1132 aa21.04■□□□□ 0.96
VARS-228ENST00000495010 GPRASP1Q5JY77 1395 aa21.04■□□□□ 0.96
VARS-228ENST00000495010 BTG4Q9NY30 223 aa21.03■□□□□ 0.96
VARS-228ENST00000495010 ABCA3Q99758 1704 aa21.02■□□□□ 0.96
VARS-228ENST00000495010 FAM98CQ17RN3 349 aaKnown RBP21.02■□□□□ 0.96
VARS-228ENST00000495010 HIRIP3Q9BW71 556 aaPredicted RBP21.02■□□□□ 0.96
VARS-228ENST00000495010 TRAK1Q9UPV9 953 aa21.02■□□□□ 0.96
VARS-228ENST00000495010 DLC1Q96QB1 1528 aa21.02■□□□□ 0.96
VARS-228ENST00000495010 EIF3AQ14152 1382 aaKnown RBP21.01■□□□□ 0.95
VARS-228ENST00000495010 SRCAPQ6ZRS2 3230 aa21■□□□□ 0.95
VARS-228ENST00000495010 MINK1Q8N4C8 1332 aaPredicted RBP21■□□□□ 0.95
VARS-228ENST00000495010 PAK3O75914 559 aaPredicted RBP20.98■□□□□ 0.95
VARS-228ENST00000495010 NGDNQ8NEJ9 315 aaKnown RBP20.98■□□□□ 0.95
VARS-228ENST00000495010 ADGRB2O60241 1585 aa20.97■□□□□ 0.95
VARS-228ENST00000495010 KDM2AQ9Y2K7 1162 aa20.97■□□□□ 0.95
VARS-228ENST00000495010 PSDA5PKW4 1024 aaPredicted RBP20.96■□□□□ 0.95
VARS-228ENST00000495010 COL14A1Q05707 1796 aaKnown RBP20.95■□□□□ 0.94
VARS-228ENST00000495010 WASLO00401 505 aaPredicted RBP20.95■□□□□ 0.94
VARS-228ENST00000495010 TRPM3Q9HCF6 1732 aaPredicted RBP20.95■□□□□ 0.94
VARS-228ENST00000495010 PRDM11Q9NQV5 511 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 91.5 ms